miR-Intess: classification

other hairpins

novel_cloningOK_Multihit_5varHIGH_loopOverlap (1 loci)

novel_cloningOK_loopOverlap_mirtron_nonpairedHIGH (1 loci)

block1437096 [novel_cloningOK_loopOverlap_mirtron_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.399	no	no	0.56/0.59	18/22/0.87	0.0	0.2	27	0	6	0	18	-3	5arm_loop_3arm	1	3	0.41	3	39	6	na	na

		reads	miRBase family seed
seed	-------------------CUGUGUA-------------------------------------------------------	39	novel
		len	cloning frequencies
			T1S1	T1S2	T3S1	T3S2	T4S1	T5S2
	------------------ACTGTGTACCCTCCCACTCCAG-----------------------------------------	22	11	10	1	1	2	1
	------------------ACTGTGTACCCTCCCACTCCA------------------------------------------	21	6	1	1	-	-	-
	------------------ACTGTGTACCCTCCCACTC--------------------------------------------	19	-	-	3	-	-	-
	------------------ACTGTGTACCCTCCCACT---------------------------------------------	18	1	-	-	-	-	1
rat	ggacattgcctgccactgACTGTGTACCCTCCCACTCCAGgagctgagggccgagcaggaatggctgctgtggcaagcccc
	*********************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000019500 ENSRNOG00000014369 Slc27a4
rat	((...(((((.((((....((((...(((((...(((...)))..)))))....))))...))))......))))).))..	0.750 -27.80

rat

chromosome:3:8799398:8799478:1

novel_cloningOK_mirtron_nonpairedHIGH_bulgeHIGH (1 loci)

block774722 [novel_cloningOK_mirtron_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.016	no	no	0.44/0.52	18/24/0.88	0.7	0.7	23	0	9	0	25	3	3arm	1	0	0.33	4	34	9	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------UCAUCAC-----------------------------------------	27	novel
seed	-------------------------------------------------------------------------CACAAUC-------------------------------------	5	novel
seed	--------------------------------------------------------------------CUCAUCA------------------------------------------	1	novel
seed	------------------------------------------------------------------------UCACAAU--------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1
	--------------------------------------------------------------------CTCATCACAATCCCACTTCCCT---------------------------	22	6	5	-	1	2	-	-	-	-
	--------------------------------------------------------------------CTCATCACAATCCCACTTCCC----------------------------	21	4	1	-	-	-	-	1	-	-
	------------------------------------------------------------------------TCACAATCCCACTTCCCTAG-------------------------	20	2	-	-	-	-	2	-	-	-
	--------------------------------------------------------------------CTCATCACAATCCCACTTCCCTAG-------------------------	24	2	1	-	-	-	-	-	-	-
	--------------------------------------------------------------------CTCATCACAATCCCACTTCCCTA--------------------------	23	-	-	1	-	-	-	-	-	-
	------------------------------------------------------------------------TCACAATCCCACTTCCCTA--------------------------	19	1	-	-	-	-	-	-	-	-
	--------------------------------------------------------------------CTCATCACAATCCCACTTC------------------------------	19	-	-	-	-	-	-	-	1	-
	--------------------------------------------------------------------CTCATCACAATCCCACTT-------------------------------	18	-	-	-	-	-	-	-	-	1
	-------------------------------------------------------------------ACTCATCACAATCCCACTTCCCT---------------------------	23	-	-	-	-	1	-	-	-	-
	--------------------------------------------------------------------CTCATCACAATCCCACTTCC-----------------------------	20	-	-	-	-	-	-	-	1	-
	-----------------------------------------------------------------------ATCACAATCCCACTTCCC----------------------------	18	-	-	-	-	1	-	-	-	-
rat	agctcatggtagggcccagggctggggtctagggaggggatgggatgcaaatggcctgagatacagcaCTCATCACAATCCCACTTCCCTAGcaactgcccagcggcaaggtgggct
	*********************************************************************************************************************
	>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000004370 ENSRNOG00000003149 Farsla
rat	(((((((.((.((((.....(((((((....((((...((((((.(((.................)))))))))....))))....)))))))....))))....))...)))))))	0.810 -46.53

rat

chromosome:19:24955239:24955355:-1

novel_cloningOK_multiarm_5varHIGH_loopOverlap_randfoldOK (1 loci)

sblock4399 [novel_cloningOK_multiarm_5varHIGH_loopOverlap_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.17/0.52	18/24/0.70	1.5 0.0 1.3 0.0	1.0 0.0 2.0 0.0	2 1 3 9	0 0 0 0	2 1 1 2	0 0 0 0	25 38 50 15	12 5 -13 20	5arm 5arm 5arm_loop_3arm 3arm	1 2 2 2	nd nd nd nd	0.38 0.44 0.38 0.25	7 3 4 3	20	2	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------GAGACUG---------------------------	10	novel
seed	--------------------------------------------------------------------------------------------GAGAAUA---------------------	2	novel
seed	-----------------------------------------------------------------------------------------ACUGAGA------------------------	2	novel
seed	------------------------------------------------------GAGCAUC-----------------------------------------------------------	1	novel
seed	---------------------------------------GAAUUUU--------------------------------------------------------------------------	1	novel
seed	----------------------------------------------------CUGAGCA-------------------------------------------------------------	1	novel
seed	--------------------------CUCUGUC---------------------------------------------------------------------------------------	1	novel
seed	---------------------------------------------------ACUGAGC--------------------------------------------------------------	1	novel
seed	-----------------------------UGUCUGG------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T5S1
	-------------------------------------------------------------------------------------TGAGACTGAGAATACAGGTG---------------	20	-	9
	----------------------------------------------------------------------------------------GACTGAGAATACAGGTGGA-------------	19	-	2
	----------------------------CTGTCTGGGATGAATTTTT-------------------------------------------------------------------------	19	-	1
	-------------------------------------------------------------------------------------------TGAGAATACAGGTGGATGGAAGAG-----	24	1	-
	-----------------------------------------------------TGAGCATCGGAAGGTGAAGAG----------------------------------------------	21	-	1
	---------------------------------------------------ACTGAGCATCGGAAGGTGAAG------------------------------------------------	21	-	1
	--------------------------------------TGAATTTTTTTATACTGA----------------------------------------------------------------	18	-	1
	--------------------------------------------------TACTGAGCATCGGAAGGTGA--------------------------------------------------	20	-	1
	-------------------------TCTCTGTCTGGGATGAATTTTTTT-----------------------------------------------------------------------	24	1	-
	-------------------------------------------------------------------------------------------TGAGAATACAGGTGGATGG----------	19	-	1
	-------------------------------------------------------------------------------------TGAGACTGAGAATACAGGT----------------	19	-	1
rat	tcagacgatcttcttcgtgctgtgttctctgtctgggatgaatttttttatactgagcatcggaaggtgaagaggagggtggggaTGAGACTGAGAATACAGGTGgatggaagagagctg
	************************************************************************************************************************
rat	.(((....((((((((...((((((((((.((((.......((((((((...((...((((....)))).)))))))))).......)))).))))))))))...)).))))))...)))	0.750 -37.14

rat

chromosome:15:254498:254617:-1

intergenic

novel_cloningOK_multiarm_DicerNOK_5varHIGH_bulgeHIGH (1 loci)

sblock11367 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.616	no	no	0.33/0.55	19/25/0.77	2.8 0.0 0.0	1.0 0.0 0.0	6 4 1	0 0 0	1 2 1	0 0 0	20 18 11	1 5 14	5arm 3arm 3arm	1 1 1	nd nd nd	0.27 0.35 0.43	5 3 3	13	3	1	-3

		reads	miRBase family seed
seed	------------------------------------------------------------CCCUCUG---------------------------------	5	novel
seed	---------------------CACAGAA------------------------------------------------------------------------	2	novel
seed	---------------------------------------------------------CCUCCCU------------------------------------	1	novel
seed	--------------------------AAAGAGA-------------------------------------------------------------------	1	novel
seed	----------------------ACAGAAA-----------------------------------------------------------------------	1	novel
seed	------------------------AGAAAGA---------------------------------------------------------------------	1	novel
seed	---------------------------------------------------------------------UUGGUUG------------------------	1	novel
seed	-----------------------------GAGAACC----------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S2	T4S2	T5S1
	-----------------------------------------------------------TCCCTCTGATTTGGTTGAATCTG------------------	23	-	-	4
	--------------------TCACAGAAAGAGAACCTTCAGGGAC-------------------------------------------------------	25	-	-	2
	-----------------------------------------------------------TCCCTCTGATTTGGTTGAA----------------------	19	-	-	1
	---------------------CACAGAAAGAGAACCTTCAGGG---------------------------------------------------------	22	-	-	1
	-------------------------GAAAGAGAACCTTCAGGGACC------------------------------------------------------	21	-	-	1
	--------------------------------------------------------------------TTTGGTTGAATCTGTTATGGA-----------	21	1	-	-
	--------------------------------------------------------TCCTCCCTCTGATTTGGTTG------------------------	20	-	1	-
	-----------------------CAGAAAGAGAACCTTCAGGGAC-------------------------------------------------------	22	-	-	1
	----------------------------AGAGAACCTTCAGGGACCAG----------------------------------------------------	20	-	-	1
rat	tctgtcattgtcagagttttTCACAGAAAGAGAACCTTCAGGGACcaggcactacctccTCCCTCTGATTTGGTTGAATCTGttatggagatggtggggg
	****************************************************************************************************
rat	.((.((((..((...((.....(((((.....((((.(((((((..(((.....)))..)))))..))...))))...))))).))...))..)))).))	0.530 -24.70

rat

chromosome:7:112744685:112744784:1

intergenic

novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK_bulgeHIGH (1 loci)

sblock9106 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.007	no	no	0.29/0.48	20/24/1.00	2.7 0.0 0.0	2.5 0.8 0.0	6 4 1	0 0 0	3 1 1	0 0 0	14 20 10	-1 -2 10	5arm_loop 3arm_loop 3arm	1 1 1	nd nd nd	0.30 0.33 0.41	4 5 6	11	3	-1	1

		reads	miRBase family seed
seed	---------------------------------------------CAUUCUU------------------------------------	4	novel
seed	---------------GGCAAUC------------------------------------------------------------------	3	novel
seed	--------------------UCUCAAA-------------------------------------------------------------	2	novel
seed	---------------------CUCAAAU------------------------------------------------------------	1	novel
seed	---------------------------------------------------------GGAUUGA------------------------	1	novel
		len	cloning frequencies
			T2S1	T4S2	T5S1
	--------------------------------------------TCATTCTTTAAATGGATTGAGTCT--------------------	24	-	-	3
	-------------------ATCTCAAATCTAGCTCGGAG-------------------------------------------------	20	-	-	2
	--------------GGGCAATCTCAAATCTAGCTC-----------------------------------------------------	21	1	-	1
	--------------GGGCAATCTCAAATCTAGCT------------------------------------------------------	20	-	1	-
	--------------------------------------------TCATTCTTTAAATGGATTGAG-----------------------	21	-	-	1
	--------------------TCTCAAATCTAGCTCGGAGTC-----------------------------------------------	21	-	-	1
	--------------------------------------------------------TGGATTGAGTCTATAGCCTTTT----------	22	-	-	1
rat	gaccccttccatcaGGGCAATCTCAAATCTAGCTCGGAGTCtgtTCATTCTTTAAATGGATTGAGTCTATAGCCTTTTaccaggggtc
	****************************************************************************************
rat	(((((((......(((((...(((.((((((....(((((......))))).....)))))))))......))))).....)))))))	0.940 -26.60

rat

chromosome:4:164264410:164264497:1

intergenic

novel_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH (1 loci)

sblock1901 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.134	no	no	0.43/0.53	18/25/0.91	1.5 0.0 0.0	0.0 0.0 0.0	8 1 22	0 0 0	2 1 3	0 0 0	14 27 13	16 6 20	5arm 5arm 3arm	1 1 1	nd nd nd	0.39 0.50 0.43	4 8 6	46	3	6	1

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------ACUACUG--------------------------	25	novel
seed	------------------CACACAG-------------------------------------------------------------------------------------	5	novel
seed	------------------------------------------------------------------------------CUACUGC-------------------------	4	novel
seed	---------------GGUCACA----------------------------------------------------------------------------------------	4	novel
seed	--------------------------------------------------------------------------------ACUGCUA-----------------------	3	novel
seed	-----------------------------------------------------------------------------------GCUAGUG--------------------	2	novel
seed	--------------------------------------------------------------------------GCAACUA-----------------------------	1	novel
seed	---------------------ACAGAAU----------------------------------------------------------------------------------	1	novel
seed	----------------------------AUUGCCC---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T5S1
	----------------------------------------------------------------------------AACTACTGCTAGTGTGAACAG-------------	21	1	1	22
	--------------TGGTCACACAGAATATTGCCCAG-------------------------------------------------------------------------	23	-	-	4
	-----------------------------------------------------------------------------ACTACTGCTAGTGTGAACAG-------------	20	-	-	4
	-----------------TCACACAGAATATTGCCCAG-------------------------------------------------------------------------	20	-	-	4
	-------------------------------------------------------------------------------TACTGCTAGTGTGAACAGCC-----------	20	-	-	2
	--------------------CACAGAATATTGCCCAGCC-----------------------------------------------------------------------	19	-	1	-
	-----------------TCACACAGAATATTGCCC---------------------------------------------------------------------------	18	-	-	1
	----------------------------------------------------------------------------AACTACTGCTAGTGTGAACAGC------------	22	1	-	-
	---------------------------TATTGCCCAGCCTACGTTGT---------------------------------------------------------------	20	-	-	1
	-------------------------------------------------------------------------------TACTGCTAGTGTGAACAGCCAACTG------	25	-	-	1
	----------------------------------------------------------------------------------TGCTAGTGTGAACAGCCAACT-------	21	-	-	1
	----------------------------------------------------------------------------------TGCTAGTGTGAACAGCCA----------	18	-	-	1
	-------------------------------------------------------------------------GGCAACTACTGCTAGTGTGAACAG-------------	24	-	-	1
rat	cctgttcagagggatggtcacacagaatattgcccagcctacgttgtggaggccacgccccagagccaccagaggcAACTACTGCTAGTGTGAACAGccaactggggggg
	**************************************************************************************************************
rat	(((.(((((..((.((.((((((((....(((((........(((.(((.(((...)))))).))).......)))))......)).)))))).)).))..))))).)))	0.700 -39.16

rat

chromosome:1:128264190:128264299:1

intergenic

novel_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)

sblock206 [novel_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.705	no	no	0.36/0.50	19/25/0.70	0.0 0.6 0.0 0.0 0.0	0.0 0.6 0.0 0.0 0.0	1 5 7 1 1	0 0 0 0 0	1 1 3 1 1	0 0 0 0 0	0 8 26 6 1	18 4 -11 4 10	5arm 5arm 5arm_loop_3arm 3arm 3arm	22 22 22 24 24	nd nd nd nd nd	0.58 0.50 0.36 0.43 0.50	5 5 6 4 3	20	3	-1	0

		reads	miRBase family seed
seed	---------------------------GCUUCUA----------------------------------------	8	novel
seed	--------------------GGGAACU-----------------------------------------------	4	novel
seed	------------AGGGAUU-------------------------------------------------------	4	miR-541
seed	------------------------------------------------AGGGUUG-------------------	1	miR-296
seed	------------------------------------------------------GCAUCAU-------------	1	novel
seed	---------CAUAGGG----------------------------------------------------------	1	novel
seed	-CAGUUGC------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1	T5S1	T5S2
	--------------------------TGCTTCTAGTCTTAGTTGAACT--------------------------	22	1	7	-
	-----------TAGGGATTTGGGAACTGCTTCT-----------------------------------------	22	-	3	-
	-------------------TGGGAACTGCTTCTAGTCT------------------------------------	19	1	1	1
	TCAGTTGCTCATAGGGATT-------------------------------------------------------	19	-	1	-
	--------TCATAGGGATTTGGGAACTGCTTCT-----------------------------------------	25	-	1	-
	-----------TAGGGATTTGGGAACTGCT--------------------------------------------	19	-	1	-
	-----------------------------------------------------TGCATCATGACCACAGTGAC-	20	-	1	-
	-------------------TGGGAACTGCTTCTAGTCTTAGT--------------------------------	23	-	1	-
	-----------------------------------------------TAGGGTTGCATCATGACCACA------	21	-	1	-
rat	tcagttgctcaTAGGGATTTGGGAACTGCTTCTAGTCTTAGTTGAACTagggttgcatcatgaccacagtgact
	**************************************************************************
rat	..(((..((.....((...(((.....((.(((((((......)).)))))))....)))...))..))..)))	0.590 -14.40

rat

chromosome:1:49857772:49857845:-1

intergenic

novel_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK (1 loci)

sblock9665 [novel_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.42/0.57	18/23/0.82	0.0 0.0 0.0 0.0	0.0 0.7 2.2 1.9	1 9 5 7	0 0 0 0	1 2 3 4	0 0 0 0	17 41 53 28	17 -8 -20 5	5arm 5arm_loop_3arm 5arm_loop_3arm 3arm	1 16 16 16	nd nd nd nd	0.19 0.43 0.41 0.18	2 4 4 2	22	5	-12	-10

		reads	miRBase family seed
seed	-----------------------------------------------------------------CACAUGA-------------------------------------------	7	novel
seed	------------------------------------------------------GAUGUCA------------------------------------------------------	5	novel
seed	------------------------------------------------------------------ACAUGAG------------------------------------------	3	novel
seed	------------------------------------------------------------------------------------------ACAUGAG------------------	3	novel
seed	------------------------------------------ACAUGAG------------------------------------------------------------------	3	novel
seed	------------------ACAUGAG------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T3S1	T4S2	T5S1
	----------------------------------------------------------------TCACATGAGGTGGTGATGTCACT----------------------------	23	-	-	3	-	-
	-----------------------------------------------------TGATGTCACTGTCACATGAGGT----------------------------------------	22	1	-	1	-	-
	-----------------------------------------------------------------------------------------CACATGAGGTGGTGATGTCACT----	22	1	-	-	-	1
	----------------------------------------------------------------TCACATGAGGTGGTGATG---------------------------------	18	-	-	-	1	1
	-----------------------------------------CACATGAGGTGGTGATGTCACT----------------------------------------------------	22	1	-	-	-	1
	-----------------------------------------------------------------CACATGAGGTGGTGATGTCACT----------------------------	22	1	-	-	-	1
	-----------------------------------------------------------------CACATGAGGTGGTGATGTCAC-----------------------------	21	-	-	-	-	1
	-----------------------------------------------------TGATGTCACTGTCACATG--------------------------------------------	18	-	1	-	-	-
	-----------------------------------------CACATGAGGTGGTGATGTCAC-----------------------------------------------------	21	-	-	-	-	1
	----------------------------------------------------------------TCACATGAGGTGGTGATGTCA------------------------------	21	-	-	-	-	1
	-----------------------------------------------------TGATGTCACTGTCACATGAG------------------------------------------	20	-	-	1	-	-
	-----------------CACATGAGGTGGTGAGGTCAC-----------------------------------------------------------------------------	21	-	-	-	-	1
	-----------------------------------------------------------------------------------------CACATGAGGTGGTGATGTCAC-----	21	-	-	-	-	1
	-----------------------------------------------------TGATGTCACTGTCACATGA-------------------------------------------	19	-	-	1	-	-
	----------------------------------------------------------------TCACATGAGGTGGTGATGTCAC-----------------------------	22	1	-	-	-	-
rat	ggtggtgatgtcactgaCACATGAGGTGGTGAGGTCACtgaCACATGAGGTGGTGATGTCACTGTCACATGAGGTGGTGATGTCACTgaCACATGAGGTGGTGATGTCACTgtca
	*******************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000013563 ENSRNOG00000009683 Sdcbp
rat	((..(((((((((((.((.((((..(((((((.((((((.((.((((.((..(((....)))..)).))))..)))))))).))))).)).))))..)))))))))))))..)).	1.000 -54.20

rat

chromosome:5:19840009:19840123:1

Same_strand|Intronic_coding|ENSRNOT00000013563|ENSRNOG00000009683 ## ENSRNOG00000009683|protein_coding|Sdcbp|Syntenin-1 (Syndecan-binding protein 1). [Source:UniProtKB/Swiss-Prot;Acc:Q9JI92] ## {Repeats: trf 191 214 0 class=trf,trf 239 261 0 class=trf,trf 360 381 0 class=trf,trf 167 189 0 class=trf,trf 143 166 0 class=trf,trf 215 237 0 class=trf,trf 23 45 0 class=trf,trf 287 309 0 class=trf,trf 263 286 0 class=trf,trf 431 453 0 class=trf,trf 323 345 0 class=trf,trf 203 225 0 class=trf,trf 95 117 0 class=trf,trf 155 177 0 class=trf,trf 311 334 0 class=trf,trf 335 357 0 class=trf,trf 47 69 0 class=trf,trf 119 141 0 class=trf,trf 275 297 0 class=trf,trf 71 93 0 class=trf,trf 407 429 0 class=trf}

novel_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH (1 loci)

sblock10773 [novel_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.005	no	no	0.57/0.61	18/24/0.80	0.0 0.7	2.5 0.0	4 6	0 0	2 4	0 0	10 0	-1 9	5arm_loop 3arm	15 15	nd nd	0.33 0.33	2 2	10	4	-23	0

		reads	miRBase family seed
seed	---------------------------------------------------CAACCCA----------------	5	novel
seed	-----------CAACCCA--------------------------------------------------------	2	novel
seed	----------------------------------------------------AACCCAG---------------	2	novel
seed	-----------------------------------------------------ACCCAGG--------------	1	novel
		len	cloning frequencies
			T1S2	T2S1	T3S1	T4S1
	--------------------------------------------------TCAACCCAGGGCAGACACTCAGAC	24	-	1	-	2
	---------------------------------------------------CAACCCAGGGCAGACACTCAGAC	23	1	-	-	1
	--------------------------------------------------TCAACCCAGGGCAGACAC------	18	-	-	1	-
	--------------------------------------------------TCAACCCAGGGCAGACACTCAGA-	23	-	-	-	1
	----------------------------------------------------AACCCAGGGCAGACACTCAGAC	22	-	-	1	-
	----------TCAACCCAGGGCAGACAC----------------------------------------------	18	-	-	1	-
	----------TCAACCCAGGGCAGACACTCAGA-----------------------------------------	23	-	-	-	1
rat	actgtgtgtgTCAACCCAGGGCAGACACTCAGAacctgtgactgtgtgtgTCAACCCAGGGCAGACACTCAGAC
	**************************************************************************
rat	.(((...(((((..(((.(((..(((((.(((.........)))...)))))..))).)))..))))).)))..	1.000 -29.80

rat

chromosome:7:22452553:22452626:-1

intergenic ## {Repeats: trf 78 101 0 class=trf,trf 203 227 0 class=trf,trf 158 181 0 class=trf,trf 84 107 0 class=trf,trf 164 187 0 class=trf,trf 243 267 0 class=trf,trf 197 221 0 class=trf,trf 118 141 0 class=trf,trf 124 147 0 class=trf,trf 237 261 0 class=trf}

novel_cloningOK_multiarm_DicerNOK_Multihit_shortStem_5varHIGH_loopOverlap (1 loci)

sblock1533 [novel_cloningOK_multiarm_DicerNOK_Multihit_shortStem_5varHIGH_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.017	no	no	0.35/0.45	19/24/0.90	4.0 0.0	1.9 0.0	9 1	0 0	3 1	0 0	0 9	-1 -1	5arm_loop 3arm	39 46	nd nd	0.18 0.25	2 3	10	3	-7	-10

		reads	miRBase family seed
seed	---GUCUAUG----------------------------------------------------	3	novel
seed	-GUGUCUA------------------------------------------------------	3	novel
seed	------------GUGUUCA-------------------------------------------	2	miR-124*
seed	---------GUUGUGU----------------------------------------------	1	novel
seed	----------------------------------AGUCCUA---------------------	1	novel
		len	cloning frequencies
			T4S2	T5S1	T5S2
	TGTGTCTATGTTGTGTTCACTTCT--------------------------------------	24	-	3	-
	--TGTCTATGTTGTGTTCACTTCT--------------------------------------	22	-	3	-
	-----------TGTGTTCACTTCTATTCCTA-------------------------------	20	-	1	-
	-----------TGTGTTCACTTCTATTCCT--------------------------------	19	1	-	-
	--------TGTTGTGTTCACTTCTATTC----------------------------------	20	-	-	1
	---------------------------------TAGTCCTAGAGGGAAATCAG---------	20	-	1	-
rat	TGTGTCTATGTTGTGTTCACTTCTATTCCTAttTAGTCCTAGAGGGAAATCAGcaaggatag
	**************************************************************
	------------------------------------------------------------------------	ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted
	------------------------------------------------------------------------	ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted
rat	..(((((.(((((..(((.((((((...((....))...)))))))))..))))).))))).	1.000 -16.90

rat

chromosome:1:51819534:51819595:1

Page 31178

Jump 10 pages forward

Page 31204

miR-Intess™

block1437096 [novel_cloningOK_loopOverlap_mirtron_nonpairedHIGH]

block774722 [novel_cloningOK_mirtron_nonpairedHIGH_bulgeHIGH]

sblock4399 [novel_cloningOK_multiarm_5varHIGH_loopOverlap_randfoldOK]

sblock11367 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_bulgeHIGH]

sblock9106 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK_bulgeHIGH]

sblock1901 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]

sblock206 [novel_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

sblock9665 [novel_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK]

sblock10773 [novel_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH]

sblock1533 [novel_cloningOK_multiarm_DicerNOK_Multihit_shortStem_5varHIGH_loopOverlap]