other hairpins
novel_cloningOK_multiarm_DicerNOK_Multihit_shortStem_5varHIGH_loopOverlap (1 loci)
novel_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH (1 loci)
sblock7989 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.45/0.58 | 19/25/0.74 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.2 0.0 | 4 9 8 7 | 0 0 0 0 | 4 1 2 2 | 0 0 0 0 | 17 32 14 0 | -1 -18 11 27 | 5arm_loop 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.42 0.57 0.33 0.58 | 5 8 3 8 | 39 | 4 | 0 | -14 |
| reads | miRBase family seed | |||||
| seed | ---------------------------------GCAUUUC-------------------------------------------------- | 9 | novel | |||
| seed | -------------------------------------------------------CCACUCU---------------------------- | 8 | novel | |||
| seed | -----------------------------------------------------------------------UCUGUUC------------ | 8 | novel | |||
| seed | ------------------GAGUCUG----------------------------------------------------------------- | 5 | novel | |||
| seed | -----------------UGAGUCU------------------------------------------------------------------ | 2 | novel | |||
| seed | ------------------------------------------------------------------CCUGCUC----------------- | 2 | novel | |||
| seed | -----------------------------------------------------AUCCACU------------------------------ | 1 | novel | |||
| seed | -------------------AGUCUGU---------------------------------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------------------------CUGUUCG----------- | 1 | novel | |||
| seed | --------------------------------UGCAUUU--------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------------------------------------GCUCUGU-------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S1 | T5S1 | |||
| --------------------------------TGCATTTCCAAGCAGGGATCT------------------------------------- | 21 | - | - | - | 9 | |
| ----------------------------------------------------------------------CTCTGTTCGCCCGTTTCTCA | 20 | - | 1 | - | 7 | |
| ------------------------------------------------------TCCACTCTGATACCTGCTCTGT-------------- | 22 | - | - | - | 6 | |
| -----------------TGAGTCTGTCTCCCATGCA------------------------------------------------------ | 19 | - | 1 | - | 4 | |
| ----------------TTGAGTCTGTCTCCCATGCA------------------------------------------------------ | 20 | - | - | 1 | 1 | |
| -----------------------------------------------------------------ACCTGCTCTGTTCGCCCGTTTCTCA | 25 | - | - | - | 2 | |
| ------------------------------------------------------TCCACTCTGATACCTGCTCTG--------------- | 21 | - | - | - | 2 | |
| ----------------------------------------------------TATCCACTCTGATACCTGCTCT---------------- | 22 | 1 | - | - | - | |
| ------------------GAGTCTGTCTCCCATGCAT----------------------------------------------------- | 19 | 1 | - | - | - | |
| -----------------------------------------------------------------------TCTGTTCGCCCGTTTCTCA | 19 | - | - | - | 1 | |
| --------------------------------------------------------------------TGCTCTGTTCGCCCGTTTC--- | 19 | - | - | - | 1 | |
| -------------------------------ATGCATTTCCAAGCAGGGATCT------------------------------------- | 22 | - | - | - | 1 | |
| rat | gggctccagaggtgtttTGAGTCTGTCTCCCATGCATTTCCAAGCAGGGATCTaTCCACTCTGATACCTGCTCTGTTCGCCCGTTTCTCA | |||||
| ****************************************************************************************** | ||||||
| rat | ((((..((((((((((..((((.....((((.(((........))))))).......)))).))))))...))))...))))........ | 0.990 -29.80 | ||||
| rat | chromosome:3:76946153:76946242:1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_mirtron_randfoldOK_bulgeHIGH (1 loci)
sblock8597 [novel_cloningOK_multiarm_DicerNOK_mirtron_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.45/0.78 | 18/21/0.85 | 0.0 0.3 | 0.5 0.0 | 2 18 | 0 0 | 2 6 | 0 0 | 28 16 | 3 1 | 5arm 3arm | 1 1 | 39 0 | 0.26 0.33 | 4 4 | 33 | 6 | -2 | 0 |
| reads | miRBase family seed | |||||||
| seed | -------------------------------------------------------------------UGCCUUU---------------------------- | 22 | novel | |||||
| seed | ------------------------------------------------------------------AUGCCUU----------------------------- | 9 | miR-532 | |||||
| seed | -----------------------------GGGGAGA------------------------------------------------------------------ | 2 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------ATGCCTTTGCTATCTCCCAG---------------- | 20 | 1 | 5 | 7 | 1 | 2 | - | |
| -----------------------------------------------------------------AATGCCTTTGCTATCTCCCAG---------------- | 21 | - | 3 | 2 | - | - | 3 | |
| ------------------------------------------------------------------ATGCCTTTGCTATCTCCCAGG--------------- | 21 | - | 1 | - | - | - | 2 | |
| ------------------------------------------------------------------ATGCCTTTGCTATCTCCC------------------ | 18 | - | - | 1 | - | - | 1 | |
| ----------------------------TGGGGAGACCGAGGGGGC-------------------------------------------------------- | 18 | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------ATGCCTTTGCTATCTCCCA----------------- | 19 | - | 1 | - | - | - | - | |
| -----------------------------------------------------------------AATGCCTTTGCTATCTCCCA----------------- | 20 | - | 1 | - | - | - | - | |
| ----------------------------TGGGGAGACCGAGGGGGCA------------------------------------------------------- | 19 | - | 1 | - | - | - | - | |
| rat | gccagcatagaaaaatggagaaaatatttggggagaccgagggggcattctttatatctgatccgAATGCCTTTGCTATCTCCCAGggaaatgctccgctgg | |||||||
| ****************************************************************************************************** | ||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000012136 ENSRNOG00000009153 LOC500292 | |||||||
| rat | .(((((..........((((..........((((((....((((((((((..............))))))))))....)))))).........))))))))) | 0.960 -34.25 | ||||||
| rat | chromosome:4:149308997:149309098:-1 | Same_strand|Intronic_coding|ENSRNOT00000012136|ENSRNOG00000009153 ## Same_strand|Boundary_coding|ENSRNOT00000012136|ENSRNOG00000009153 ## ENSRNOG00000009153|protein_coding|LOC500292|similar to cell death-inducing DFFA-like effector c (LOC500292), mRNA [Source:RefSeq_dna;Acc:NM_001024333] |
novel_cloningOK_multiarm_DicerNOK_randfoldOK_bulgeHIGH (1 loci)
sblock1872 [novel_cloningOK_multiarm_DicerNOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.40/0.48 | 18/25/0.82 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 25 1 | 0 0 0 | 1 4 1 | 0 0 0 | 20 25 4 | 8 12 35 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.28 0.57 0.32 | 4 10 4 | 39 | 4 | 3 | -11 |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------------------------------CUCAUGA-------------------------------------- | 29 | novel | |||
| seed | --------------------------------------------------------------------GACUCAU---------------------------------------- | 7 | novel | |||
| seed | ---------------------------------------------------------------------------GACCAAA--------------------------------- | 1 | novel | |||
| seed | ---------------------------------------------------------------------------------------------AGGCAGC--------------- | 1 | novel | |||
| seed | ---------------------GCACUGU--------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S2 | T5S1 | |||
| ---------------------------------------------------------------------ACTCATGACCAAAGTGGACTG------------------------- | 21 | 1 | 1 | - | 25 | |
| -------------------------------------------------------------------TGACTCATGACCAAAGTGGACTG------------------------- | 23 | - | - | 1 | 3 | |
| -------------------------------------------------------------------TGACTCATGACCAAAGTG------------------------------ | 18 | - | - | - | 2 | |
| ---------------------------------------------------------------------ACTCATGACCAAAGTGGAC--------------------------- | 19 | - | - | - | 2 | |
| --------------------------------------------------------------------------------------------TAGGCAGCACCAGTATTTC---- | 19 | - | - | - | 1 | |
| -------------------------------------------------------------------TGACTCATGACCAAAGTGGAC--------------------------- | 21 | - | - | - | 1 | |
| --------------------------------------------------------------------------TGACCAAAGTGGACTGCAT---------------------- | 19 | - | - | - | 1 | |
| --------------------TGCACTGTATGTAGTTTGCAGTTTG---------------------------------------------------------------------- | 25 | - | - | - | 1 | |
| rat | tgggaagggtcccgggagcttgcactgtatgtagtttgcagtttgggctgctggcgacagtagctcttgACTCATGACCAAAGTGGACTGcataggcagcaccagtatttcctaa | |||||
| ******************************************************************************************************************* | ||||||
| rat | (((((((.......((.((.(((....((((((((..((((((.(((((((((....)))))))))..))))..........))..)))))))).))))).))....))))))). | 0.670 -44.90 | ||||
| rat | chromosome:1:124855321:124855435:1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap (1 loci)
sblock8562 [novel_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.686 | no | no | 0.42/0.50 | 18/26/0.78 | 0.0 2.0 | 0.0 1.5 | 15 12 | 0 0 | 3 3 | 0 0 | 3 3 | 3 -7 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.25 0.36 | 1 3 | 40 | 3 | -3 | -4 |
| reads | miRBase family seed | ||||
| seed | ----GGCUACA--------------------------------------------------------- | 20 | novel | ||
| seed | ----------------------------------------AGCUAGC--------------------- | 7 | novel | ||
| seed | --------------------------------------------AGCACAG----------------- | 4 | novel | ||
| seed | ---UGGCUAC---------------------------------------------------------- | 4 | novel | ||
| seed | --------ACAAAGA----------------------------------------------------- | 3 | novel | ||
| seed | --------------------------------AAGAGAC----------------------------- | 1 | novel | ||
| seed | --------------ACUGACU----------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ---TGGCTACAAAGACTGACTGA--------------------------------------------- | 20 | 2 | - | 15 | |
| ---------------------------------------TAGCTAGCACAGAACTTGAAGTG------ | 23 | 1 | - | 3 | |
| --TTGGCTACAAAGACTGACTGA--------------------------------------------- | 21 | - | 2 | 2 | |
| -------------------------------------------TAGCACAGAACTTGAAGTG------ | 19 | - | - | 3 | |
| -------TACAAAGACTGACTGATAGGACC-------------------------------------- | 23 | - | - | 3 | |
| ---TGGCTACAAAGACTGACT----------------------------------------------- | 18 | - | 2 | 1 | |
| ---------------------------------------TAGCTAGCACAGAACTTGAAG-------- | 21 | - | 1 | 1 | |
| -------------------------------------------TAGCACAGAACTTGAAGTGCCC--- | 22 | - | - | 1 | |
| -------------GACTGACTGATAGGACCAGAAGAGAC----------------------------- | 26 | - | - | 1 | |
| ---------------------------------------TAGCTAGCACAGAACTTG----------- | 18 | - | - | 1 | |
| -------------------------------GAAGAGACTAGCTAGCACAGAACTT------------ | 25 | - | - | 1 | |
| rat | actTGGCTACAAAGACTGACTGAtaggaccagaagagactagctagcacagaacttgaagtgcccagg | ||||
| ******************************************************************** | |||||
| rat | .(((((.(((.(((.(((.(((.(((............)))..)))..)))..)))...))).))))) | 0.820 -11.20 | |||
| rat | chromosome:4:122194665:122194732:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH (1 loci)
sblock6214 [novel_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.533 | no | no | 0.30/0.52 | 19/25/0.80 | 7.0 0.0 0.0 | 8.6 0.0 0.0 | 8 1 1 | 0 0 0 | 3 1 1 | 0 0 0 | 0 15 0 | -8 -1 15 | 5arm_loop 3arm 3arm | 1 1 1 | nd nd nd | 0.40 0.62 0.37 | 6 10 3 | 10 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | --------UCCUGAA----------------------------------------------------------- | 2 | novel | |||
| seed | ---AGGUUUC---------------------------------------------------------------- | 2 | novel | |||
| seed | ---------------------------------------GAGGAAU---------------------------- | 1 | novel | |||
| seed | --------------AUACUGU----------------------------------------------------- | 1 | novel | |||
| seed | -----------UGAAUAC-------------------------------------------------------- | 1 | novel | |||
| seed | ----------------ACUGUUG--------------------------------------------------- | 1 | novel | |||
| seed | -UUAGGUU------------------------------------------------------------------ | 1 | novel | |||
| seed | -------------------------------------------------------GACAAUA------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S1 | T5S1 | |||
| -------------AATACTGTTGCTGACTCTAA----------------------------------------- | 20 | - | - | - | 1 | |
| TTTAGGTTTCCTGAATACTG------------------------------------------------------ | 20 | - | - | - | 1 | |
| --TAGGTTTCCTGAATACTGTTGC-------------------------------------------------- | 22 | - | - | - | 1 | |
| --TAGGTTTCCTGAATACTGT----------------------------------------------------- | 19 | - | - | - | 1 | |
| ----------CTGAATACTGTTGCTGACTCTAATA--------------------------------------- | 25 | - | - | - | 1 | |
| -------TTCCTGAATACTGTTGCTGACTC-------------------------------------------- | 23 | - | - | - | 1 | |
| ------------------------------------------------------TGACAATAAGGGCATCTGTC | 20 | - | - | 1 | - | |
| -------TTCCTGAATACTGTTGCTGAC---------------------------------------------- | 21 | 1 | - | - | - | |
| --------------------------------------TGAGGAATGCCAGAGGTGACA--------------- | 21 | - | - | - | 1 | |
| ---------------TACTGTTGCTGACTCTAATAAAA------------------------------------ | 23 | - | 1 | - | - | |
| rat | TTTAGGTTTCCTGAATACTGTTGCTGACTCTAATAAAATGAGGAATGCCAGAGGTGACAATAAGGGCATCTGTC | |||||
| ************************************************************************** | ||||||
| rat | ..(((((.((((......(((..((..(((.........)))..........))..)))...)))).))))).. | 0.930 -13.50 | ||||
| rat | chromosome:2:221195779:221195852:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_mirtron (1 loci)
sblock2080 [novel_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.021 | no | no | 0.50/0.68 | 19/23/0.91 | 0.7 1.2 | 1.0 1.3 | 3 19 | 0 0 | 2 5 | 0 0 | 7 2 | 5 5 | 5arm 3arm | 1 1 | 39 0 | 0.21 0.21 | 1 1 | 22 | 5 | 0 | 3 |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------------------CUGACAC------------------- | 11 | novel | ||||
| seed | -----------------------------------------------GACACCU----------------- | 8 | novel | ||||
| seed | ---------CGGGGUG------------------------------------------------------- | 2 | novel | ||||
| seed | --------UCGGGGU-------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S1 | T4S2 | T5S2 | |||
| ----------------------------------------------TGACACCTCTTCTCCCCTTAC---- | 21 | - | 3 | 1 | - | - | |
| --------------------------------------------TCTGACACCTCTTCTCCCCT------- | 20 | 2 | - | - | 2 | - | |
| --------------------------------------------TCTGACACCTCTTCTCCCCTTAC---- | 23 | - | - | 1 | 2 | 1 | |
| ----------------------------------------------TGACACCTCTTCTCCCCTTACA--- | 22 | - | 2 | - | - | - | |
| --------------------------------------------TCTGACACCTCTTCTCCCCTT------ | 21 | - | - | - | 2 | - | |
| ----------------------------------------------TGACACCTCTTCTCCCCTTA----- | 20 | - | - | - | 1 | - | |
| ----------------------------------------------TGACACCTCTTCTCCCCTTACAG-- | 23 | - | 1 | - | - | - | |
| -------TTCGGGGTGAGGCGGAGTCAG------------------------------------------- | 21 | - | 1 | - | - | - | |
| --------TCGGGGTGAGGCGGAGTCAGCA----------------------------------------- | 22 | 1 | - | - | - | - | |
| --------------------------------------------TCTGACACCTCTTCTCCCC-------- | 19 | - | 1 | - | - | - | |
| --------TCGGGGTGAGGCGGAGTCA-------------------------------------------- | 19 | - | 1 | - | - | - | |
| rat | gctcacaTTCGGGGTGAGGCGGAGTCAGCAgagtccacagagccTCTGACACCTCTTCTCCCCTTACAGcg | ||||||
| *********************************************************************** | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000040963 ENSRNOG00000016960 NP_001101973.1 | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000023154 ENSRNOG00000016960 NP_001101973.1 | ||||||
| rat | (((.......((((.((((.((.(((((.((..((....))..))))))).)).)))).))))....))). | 1.000 -26.80 | |||||
| rat | chromosome:1:179783333:179783403:1 | Same_strand|Intronic_coding|ENSRNOT00000040963|ENSRNOG00000016960 ## ENSRNOG00000016960|protein_coding|NP_001101973.1|polymerase (RNA) III (DNA directed) polypeptide E [Source:RefSeq_peptide;Acc:NP_001101973] |
novel_cloningOK_multiarm_DicerNOK_shortStem_nonpairedHIGH (1 loci)
sblock7653 [novel_cloningOK_multiarm_DicerNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.141 | no | no | 0.35/0.37 | 19/20/0.90 | 0.0 0.0 | 0.0 0.0 | 6 1 | 0 0 | 3 1 | 0 0 | 3 3 | 2 4 | 5arm 3arm | 1 2 | nd nd | 0.35 0.40 | 2 4 | 10 | 3 | 1 | -1 |
| reads | miRBase family seed | ||||
| seed | ----GGUUCAA--------------------------------------------- | 8 | novel | ||
| seed | ----------------------------------ACUUGAU--------------- | 1 | novel | ||
| seed | --GUGGUUC----------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S2 | T5S1 | |||
| ---TGGTTCAATGTATCTTGTTG--------------------------------- | 20 | 1 | 1 | 6 | |
| -TGTGGTTCAATGTATCTTG------------------------------------ | 19 | - | - | 1 | |
| ---------------------------------TACTTGATACCCTGTATTTC--- | 20 | - | - | 1 | |
| rat | atgTGGTTCAATGTATCTTGTTGcttgagggtttacttgataccctgtatttcgca | ||||
| ******************************************************** | |||||
| rat | .(((((..((..(((((..((.(((....)))..))..)))))..))....))))) | 0.860 -11.70 | |||
| rat | chromosome:3:140682016:140682071:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_shortStem_randfoldOK (1 loci)
sblock11302 [novel_cloningOK_multiarm_DicerNOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.60/0.86 | 19/25/0.74 | 0.0 0.0 | 0.0 0.0 | 11 1 | 0 0 | 6 1 | 0 0 | 4 8 | 7 3 | 5arm 3arm | 1 1 | nd nd | 0.24 0.40 | 3 4 | 19 | 7 | -6 | -3 |
| reads | miRBase family seed | ||||||||
| seed | -----GGGGUGG------------------------------------------------------------ | 18 | novel | ||||||
| seed | ----------------------------------------AUGAGCC------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ----TGGGGTGGTGGGGGGGGGGGG----------------------------------------------- | 21 | 6 | 1 | 1 | 3 | 1 | 2 | - | |
| ----TGGGGTGGTGGGGGGGGGG------------------------------------------------- | 19 | 1 | 1 | - | 1 | 1 | - | - | |
| ---------------------------------------AATGAGCCTCCCTTCCCCTGGACTC-------- | 25 | - | - | - | - | - | - | 1 | |
| rat | gttcTGGGGTGGTGGGGGGGGGGGGcaatgtcagaaggcaatgagcctcccttcccctggactcccatggcc | ||||||||
| ************************************************************************ | |||||||||
| <<<<<<<<-------------------------------------------------------------------------- | ENSRNOT00000011082 ENSRNOG00000008106 Shmt2 | ||||||||
| rat | ((..((((((...((((..(((((((..((((....))))....)))))))..))))...)).))))..)). | 1.000 -40.20 | |||||||
| rat | chromosome:7:67497542:67497613:1 | Opposite_strand|Intronic_coding|ENSRNOT00000011082|ENSRNOG00000008106 ## ENSRNOG00000008106|protein_coding|Shmt2|serine hydroxymethyltransferase 2 (mitochondrial) [Source:RefSeq_peptide;Acc:NP_001008323] ## {Repeats: dust 67497555 67497566 0 class=dust} |
novel_cloningOK_multiarm_DicerOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)
sblock7706 [novel_cloningOK_multiarm_DicerOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.044 | no | no | 0.42/0.52 | 19/25/0.70 | 3.7 0.8 0.0 | 4.0 0.2 2.0 | 10 8 2 | 0 0 0 | 2 3 1 | 0 0 0 | 0 31 3 | 11 -13 13 | 5arm 5arm_loop_3arm 3arm | 2 2 2 | nd nd nd | 0.44 0.42 0.50 | 6 6 6 | 23 | 3 | 2 | 3 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------CACAGUG--------------------------------------------- | 8 | miR-128 | ||
| seed | ---------GCAUGGA----------------------------------------------------------------------- | 4 | novel | ||
| seed | -GGACACA------------------------------------------------------------------------------- | 3 | novel | ||
| seed | -----ACAUGCA--------------------------------------------------------------------------- | 2 | novel | ||
| seed | -------------------------------------------------------------CCAGUAG------------------- | 2 | novel | ||
| seed | --------------------------------AAUCACA------------------------------------------------ | 2 | novel | ||
| seed | -------------------------------------CAGUGAU------------------------------------------- | 1 | novel | ||
| seed | ----CACAUGC---------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S1 | |||
| ----------------------------------TCACAGTGATGAAGCTCTGA--------------------------------- | 20 | 1 | - | 4 | |
| --------TGCATGGATGATTGCCTGGAGT--------------------------------------------------------- | 22 | 1 | - | 3 | |
| ----------------------------------TCACAGTGATGAAGCTCTG---------------------------------- | 19 | - | 1 | 2 | |
| TGGACACATGCATGGATGATTG----------------------------------------------------------------- | 22 | 1 | - | 2 | |
| -------------------------------GAATCACAGTGATGAAGCTCTGA--------------------------------- | 23 | - | - | 2 | |
| ----CACATGCATGGATGATTGC---------------------------------------------------------------- | 19 | - | - | 1 | |
| ------------------------------------ACAGTGATGAAGCTCTGAA-------------------------------- | 19 | - | - | 1 | |
| ---ACACATGCATGGATGATTG----------------------------------------------------------------- | 19 | - | - | 1 | |
| ------------------------------------------------------------TCCAGTAGAGCTTTCCTAAGAAGT--- | 24 | - | - | 1 | |
| ----CACATGCATGGATGATTGCCTGGAG---------------------------------------------------------- | 25 | - | - | 1 | |
| ------------------------------------------------------------TCCAGTAGAGCTTTCCTAAG------- | 20 | - | - | 1 | |
| rat | TGGACACATGCATGGATGATTGCCTGGAGTaGAATCACAGTGATGAAGCTCTGAagccactccagtagagctttcctaagaagtgtc | ||||
| *************************************************************************************** | |||||
| rat | ..(((((......(((...((..(((((((....(((.(((......))).)))....)))))))..))....)))......))))) | 0.830 -24.00 | |||
| rat | chromosome:3:141689309:141689395:-1 | intergenic |
novel_cloningOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH (1 loci)
block1066938 [novel_cloningOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.837 | no | no | 0.40/0.63 | 18/24/0.72 | 0.0 0.2 0.0 | 0.0 1.3 0.0 | 3 11 5 | 0 0 0 | 1 1 2 | 0 0 0 | 14 21 6 | -3 -14 -1 | 5arm_loop 5arm_loop_3arm 3arm_loop | 1 1 1 | nd nd nd | 0.42 0.55 0.35 | 4 6 3 | 25 | 2 | 2 | 1 |
| reads | miRBase family seed | |||
| seed | ----------------------CCCACAU-------------------------------- | 9 | novel | |
| seed | ------------------------------------GACAAGU------------------ | 8 | novel | |
| seed | ---------------ACAGCCU--------------------------------------- | 3 | novel | |
| seed | -----------------------CCACAUC------------------------------- | 2 | novel | |
| seed | ------------------------CACAUCA------------------------------ | 1 | novel | |
| seed | ---------------------------AUCAGAA--------------------------- | 1 | novel | |
| seed | -----------------------------CAGAAUU------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------TCCCACATCAGAATTGACAAGTG----------------- | 23 | - | 5 | |
| -----------------------------------TGACAAGTGCCGGGTGGTGA------ | 20 | - | 5 | |
| --------------CACAGCCTCCCACATCAGA---------------------------- | 19 | - | 3 | |
| ---------------------TCCCACATCAGAATTGACAAG------------------- | 21 | - | 2 | |
| ---------------------TCCCACATCAGAATTGACAA-------------------- | 20 | - | 2 | |
| ----------------------CCCACATCAGAATTGACAAG------------------- | 20 | - | 2 | |
| -----------------------------------TGACAAGTGCCGGGTGGT-------- | 18 | 1 | - | |
| --------------------------CATCAGAATTGACAAGTGC---------------- | 19 | - | 1 | |
| -----------------------------------TGACAAGTGCCGGGTGGTGATTCT-- | 24 | - | 1 | |
| -----------------------CCACATCAGAATTGACAAG------------------- | 19 | - | 1 | |
| -----------------------------------TGACAAGTGCCGGGTGGTG------- | 19 | - | 1 | |
| ----------------------------TCAGAATTGACAAGTGCCGGG------------ | 21 | - | 1 | |
| rat | agcggcctttctctCACAGCCTCCCACATCAGAATTGACAAGTGCCGGGTGGTGAttctgt | |||
| ************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000038623 ENSRNOG00000028243 NP_001103047.1 | |||
| rat | .............((((.((((..(((.((......))...)))..)))).))))...... | 0.960 -11.50 | ||
| rat | chromosome:20:13190022:13190082:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000038623|ENSRNOG00000028243 ## ENSRNOG00000028243|protein_coding|NP_001103047.1| |
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