other hairpins
novel_cloningOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH (1 loci)
novel_cloningOK_multiarm_DicerOK_shortStem_5varHIGH (1 loci)
sblock10881 [novel_cloningOK_multiarm_DicerOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.025 | no | no | 0.41/0.50 | 19/25/0.70 | 2.3 0.0 | 3.5 0.0 | 6 4 | 0 0 | 2 2 | 0 0 | 1 2 | 5 7 | 5arm 3arm | 1 1 | nd nd | 0.30 0.15 | 3 2 | 10 | 3 | 3 | 3 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------GGAGCUC-------------- | 4 | novel | ||
| seed | ------GCACAUG--------------------------------------------------------------- | 3 | novel | ||
| seed | --GAUUGCA------------------------------------------------------------------- | 2 | novel | ||
| seed | ------------GGCAAAG--------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T4S1 | T5S1 | |||
| ------------------------------------------------------TGGAGCTCTGTGAGGTAACA-- | 20 | - | 1 | 3 | |
| -TGATTGCACATGGCAAAGCT------------------------------------------------------- | 20 | 1 | - | 1 | |
| -----TGCACATGGCAAAGCTAAAACAGGG---------------------------------------------- | 25 | - | - | 2 | |
| -----------TGGCAAAGCTAAAACAGGG---------------------------------------------- | 19 | - | - | 1 | |
| -----TGCACATGGCAAAGCTAAAACA------------------------------------------------- | 22 | - | - | 1 | |
| rat | tTGATTGCACATGGCAAAGCTAAAACAGGGcagccaggcagaagagaggctctcTGGAGCTCTGTGAGGTAACAac | ||||
| **************************************************************************** | |||||
| rat | (((.((((.(((((...((((....(((((.((((............))))))))).)))))))))..))))))). | 0.410 -22.10 | |||
| rat | chromosome:7:96039336:96039411:-1 | intergenic |
novel_cloningOK_multiarm_Multihit_5varHIGH_loopOverlap_nonpairedHIGH (1 loci)
sblock1286 [novel_cloningOK_multiarm_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.043 | no | no | 0.47/0.68 | 18/22/0.77 | 0.0 1.2 0.0 2.0 | 0.0 1.0 0.0 1.2 | 14 5 1 5 | 0 0 0 0 | 9 3 1 2 | 0 0 0 0 | 0 8 17 29 | 34 26 17 -3 | 5arm 5arm 5arm 3arm_loop | 2 2 2 29 | nd nd nd nd | 0.57 0.63 0.52 0.32 | 6 6 8 3 | 35 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -CCCAAGA--------------------------------------------------------------------------------------------------------- | 24 | novel | |||||||||
| seed | -----------CCACUCU----------------------------------------------------------------------------------------------- | 3 | novel | |||||||||
| seed | ------------------------------------------------------------------GUCUCAG---------------------------------------- | 2 | novel | |||||||||
| seed | ---------------------------------------------------------------ACUGUCU------------------------------------------- | 2 | novel | |||||||||
| seed | ---------CUCCACU------------------------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ------------------CACCGGA---------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | --------------------------------------------------------------CACUGUC-------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| TCCCAAGACCTCCACTCTCAC-------------------------------------------------------------------------------------------- | 21 | 3 | 2 | 2 | 1 | - | 1 | 2 | 3 | 8 | 2 | |
| -----------------------------------------------------------------TGTCTCAGACCCTCCAAAT----------------------------- | 19 | - | - | - | - | - | - | - | - | 2 | - | |
| ----------TCCACTCTCACCGGACCAA------------------------------------------------------------------------------------ | 19 | - | - | - | - | 1 | - | - | - | 1 | - | |
| --------CCTCCACTCTCACCGGACC-------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 2 | - | |
| -------------------------------------------------------------CCACTGTCTCAGACCCTCCAAA------------------------------ | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------CACTGTCTCAGACCCTCCA-------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------TCCACTCTCACCGGACCA------------------------------------------------------------------------------------- | 18 | - | - | - | 1 | - | - | - | - | - | - | |
| --------------------------------------------------------------CACTGTCTCAGACCCTCCAA------------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | - | |
| -----------------TCACCGGACCAATATTGCAGT--------------------------------------------------------------------------- | 21 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | TCCCAAGACCTCCACTCTCACcggaccaatattgcagtaggacttctgcggtcaggcaactccactgtctcagaccctccaaattgcaagacctttacggacactggaagtta | |||||||||||
| ***************************************************************************************************************** | ||||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | |||||||||||
| rat | ......(((.((((......(((........(((((((.(((..((((.((.(((.........))).))))))...)))..)))))))........)))....)))).))). | 0.970 -27.29 | ||||||||||
| rat | chromosome:1:47839317:47839429:1 | Same_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| ## {Repeats: trf 1 17 0 class=trf} |
novel_cloningOK_multiarm_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)
block1617039 [novel_cloningOK_multiarm_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.095 | no | no | 0.42/0.55 | 19/26/0.70 | 0.0 2.0 3.0 | 0.0 0.6 0.0 | 1 7 2 | 0 0 0 | 1 5 2 | 0 0 0 | 29 25 12 | -12 -21 3 | 5arm_loop_3arm 3arm_loop 3arm | 41 96 96 | nd nd nd | 0.43 0.53 0.45 | 6 8 5 | 10 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | --------------------------------------CUCAUAG---------------------------------------- | 3 | novel | ||||||
| seed | ------------------------------------------UAGACAG------------------------------------ | 2 | novel | ||||||
| seed | -----------------------------------------AUAGACA------------------------------------- | 2 | novel | ||||||
| seed | ------------------------------------------------GUAUCUC------------------------------ | 1 | novel | ||||||
| seed | ------------------------------CUCCUGU------------------------------------------------ | 1 | novel | ||||||
| seed | ------------------------------------------------------CACAGCA------------------------ | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T2S1 | T3S1 | T3S2 | T4S1 | T4S2 | T5S2 | |||
| -------------------------------------CCTCATAGACAGTATCTCACAG-------------------------- | 22 | - | - | - | - | - | - | 3 | |
| -----------------------------------------ATAGACAGTATCTCACAGC------------------------- | 19 | 1 | 1 | - | - | - | - | - | |
| ----------------------------------------CATAGACAGTATCTCACAGC------------------------- | 20 | - | - | 1 | 1 | - | - | - | |
| -----------------------------------------------------TCACAGCACTCCTGTCCTCA------------ | 20 | - | - | - | - | 1 | - | - | |
| -----------------------------GCTCCTGTCCTCATAGACAGT----------------------------------- | 21 | - | - | 1 | - | - | - | - | |
| -----------------------------------------------AGTATCTCACAGCACTCCTGTCCTCA------------ | 26 | - | - | - | - | - | 1 | - | |
| rat | ggtcctcctcatagacagtaactcacagtGCTCCTGTCCTCATAGACAGTATCTCACAGCACTCCTGTCCTCAtagacatgatct | ||||||||
| ************************************************************************************* | |||||||||
| rat | ((((.((......(((((........((((((.(((((......)))))........)))))).)))))......))...)))). | 0.550 -15.70 | |||||||
| rat | chromosome:4:5744742:5744826:1 | intergenic ## {Repeats: trf 2558 2602 0 class=trf,trf 2527 2571 0 class=trf} |
novel_cloningOK_multiarm_loopOverlap_bulgeHIGH (1 loci)
block2644718 [novel_cloningOK_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.066 | no | no | 0.32/0.42 | 18/24/0.78 | 0.0 0.9 1.0 | 0.0 0.0 0.7 | 1 13 3 | 0 0 0 | 1 4 2 | 0 0 0 | 32 18 10 | -13 -5 6 | 5arm_loop_3arm 3arm_loop 3arm | 2 2 2 | nd nd nd | 0.42 0.35 0.28 | 5 4 4 | 23 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ----------------------------------------CACUUCU--------------------------------- | 9 | novel | |||||
| seed | ---------------------------------------ACACUUC---------------------------------- | 7 | novel | |||||
| seed | -------------------------------------------UUCUAAG------------------------------ | 3 | novel | |||||
| seed | --------------------------------------------------CAUUUCA----------------------- | 2 | novel | |||||
| seed | -----------------------------------------------------UUCACAA-------------------- | 1 | novel | |||||
| seed | ---------------------------------GGCAAAA---------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------ACACTTCTAAGCATTTCACAAAG------------------ | 23 | - | - | - | 1 | 7 | 1 | |
| --------------------------------------AACACTTCTAAGCATTTCACAAAG------------------ | 24 | - | 2 | - | - | 3 | - | |
| ------------------------------------------CTTCTAAGCATTTCACAAAG------------------ | 20 | - | - | - | - | 3 | - | |
| -------------------------------------------------GCATTTCACAAAGCGTCAA------------ | 19 | 2 | - | - | - | - | - | |
| --------------------------------------AACACTTCTAAGCATTTCACA--------------------- | 21 | - | - | - | 1 | - | - | |
| --------------------------------TGGCAAAACACTTCTAAGC----------------------------- | 19 | - | - | - | - | - | 1 | |
| ----------------------------------------------------TTTCACAAAGCGTCAAAC---------- | 18 | - | - | 1 | - | - | - | |
| --------------------------------------AACACTTCTAAGCATTTCA----------------------- | 19 | - | - | - | 1 | - | - | |
| rat | tgtacttagttaagtttgaagatattgtgacttggcaaAACACTTCTAAGCATTTCACAAAGcgtcaaacagctgtataa | |||||||
| ******************************************************************************** | ||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000047326 ENSRNOG00000037286 LOC367336 | |||||||
| rat | (((((..((((..((((((.....(((((((((((.((.....)))))))....))))))....))))))))))))))). | 1.000 -16.20 | ||||||
| rat | chromosome:9:105243450:105243529:1 | Same_strand|Intronic_coding|ENSRNOT00000047326|ENSRNOG00000037286 ## ENSRNOG00000037286|protein_coding|LOC367336| |
novel_cloningOK_multiarm_loopOverlap_randfoldOK (1 loci)
block881225 [novel_cloningOK_multiarm_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.32/0.45 | 19/22/0.92 | 0.0 0.3 | 0.0 0.0 | 1 10 | 0 0 | 1 2 | 0 0 | 20 8 | -15 -1 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.55 0.19 | 7 3 | 13 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------CUUACAG-------------------- | 7 | novel | |
| seed | ----------------------------------UCUUACA--------------------- | 3 | novel | |
| seed | ---------------------ACAAGAU---------------------------------- | 1 | novel | |
| seed | -----------------------------CCCCUUC-------------------------- | 1 | novel | |
| seed | -------------------------------------UACAGCA------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ----------------------------------TCTTACAGCAAAGTGATAGA-------- | 20 | - | 7 | |
| ---------------------------------TTCTTACAGCAAAGTGATAGA-------- | 21 | - | 3 | |
| ----------------------------TCCCCTTCTTACAGCAAAGTGA------------ | 22 | 1 | - | |
| --------------------TACAAGATTCCCCTTCTTACAG-------------------- | 22 | - | 1 | |
| ------------------------------------TTACAGCAAAGTGATAGAT------- | 19 | - | 1 | |
| rat | tcttttgtctactccttttgtacaagattccccTTCTTACAGCAAAGTGATAGAtaacaaga | |||
| ************************************************************** | ||||
| rat | (((((((((((.((.((((((..((((.......))))...)))))).))))))))).)))) | 1.000 -13.60 | ||
| rat | chromosome:1:129008010:129008071:-1 | intergenic |
novel_cloningOK_multiarm_loopOverlap_randfoldOK_bulgeHIGH (1 loci)
block881282 [novel_cloningOK_multiarm_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.27/0.45 | 19/22/0.86 | 0.0 0.0 0.0 | 0.0 1.2 0.0 | 2 5 5 | 0 0 0 | 1 2 2 | 0 0 0 | 16 24 4 | -12 -19 6 | 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.36 0.42 0.30 | 6 6 4 | 14 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------AGCACAU---------------- | 5 | novel | ||
| seed | -------------------------GCAAAUA------------------------------ | 5 | novel | ||
| seed | -----------------GCAAUAA-------------------------------------- | 2 | novel | ||
| seed | -------------------------------ACAUUCA------------------------ | 1 | miR-181a/181b/181c/181d | ||
| seed | ------------------------------------CAUAGCA------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T3S1 | T5S1 | |||
| --------------------------------------TAGCACATAGCACTTCTGGA---- | 20 | - | - | 5 | |
| ------------------------TGCAAATACATTCATAGCACA----------------- | 21 | 1 | - | 2 | |
| ----------------TGCAATAATGCAAATACATTCA------------------------ | 22 | - | - | 2 | |
| ------------------------TGCAAATACATTCATAGCA------------------- | 19 | - | - | 2 | |
| ------------------------------TACATTCATAGCACATAGCAC----------- | 21 | - | 1 | - | |
| -----------------------------------TCATAGCACATAGCACTTCTG------ | 21 | - | - | 1 | |
| rat | tggaggagtgttaagtTGCAATAATGCAAATACATTCATAGCACATAGCACTTCTGGAtcca | ||||
| ************************************************************** | |||||
| rat | .((((((((((((.((.((.((((((......)))).)).)))).)))))))))....))). | 0.960 -17.00 | |||
| rat | chromosome:1:129010800:129010861:-1 | intergenic |
novel_cloningOK_multiarm_randfoldOK (1 loci)
sblock1790 [novel_cloningOK_multiarm_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.50/0.81 | 19/22/0.94 | 0.4 0.8 | 1.5 1.3 | 11 6 | 0 0 | 4 4 | 0 0 | 0 23 | 34 2 | 5arm 3arm | 1 1 | nd nd | 0.45 0.10 | 8 1 | 17 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | --CCCUGGC------------------------------------------------------------------------------------------------------ | 7 | novel | ||||
| seed | -------------------------------------------------------------------AGGGUCU------------------------------------- | 5 | novel | ||||
| seed | -CCCCUGG------------------------------------------------------------------------------------------------------- | 4 | miR-331 | ||||
| seed | ------------------------------------------------------------------UAGGGUC-------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T4S2 | |||
| CCCCCTGGCCGCTGAGCACCC------------------------------------------------------------------------------------------ | 21 | 1 | 1 | - | 1 | 1 | |
| -CCCCTGGCCGCTGAGCACCC------------------------------------------------------------------------------------------ | 20 | 1 | 1 | - | - | 2 | |
| -CCCCTGGCCGCTGAGCACCCGA---------------------------------------------------------------------------------------- | 22 | - | - | - | 3 | - | |
| ------------------------------------------------------------------TAGGGTCTGTTCTGTGTCCTC------------------------ | 21 | 1 | - | 1 | - | - | |
| -----------------------------------------------------------------GTAGGGTCTGTTCTGTGTCC-------------------------- | 20 | 1 | - | - | - | - | |
| ------------------------------------------------------------------TAGGGTCTGTTCTGTGTCCT------------------------- | 20 | - | - | - | 1 | - | |
| ------------------------------------------------------------------TAGGGTCTGTTCTGTGTCCTCC----------------------- | 22 | - | - | - | 1 | - | |
| ------------------------------------------------------------------TAGGGTCTGTTCTGTGTCC-------------------------- | 19 | - | - | - | - | 1 | |
| rat | CCCCCTGGCCGCTGAGCACCCGAggctgagtcagaggcacagaattaggcccgacctactctgggGTAGGGTCTGTTCTGTGTCCTCCtgacagcctggcatgggtgcagc | ||||||
| *************************************************************************************************************** | |||||||
| rat | ..........(((..((((((((((((..(((((((((((((((.(((((((.((((......)))).)))))))))))))).)))).)))))))))....)))))))))) | 0.810 -58.40 | |||||
| rat | chromosome:1:85598559:85598669:1 | intergenic |
novel_cloningOK_multiarm_shortStem (1 loci)
sblock8528 [novel_cloningOK_multiarm_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.559 | no | no | 0.65/0.80 | 18/22/0.77 | 0.0 0.0 1.5 0.0 0.0 | 0.0 0.0 2.0 0.0 0.6 | 1 1 2 1 18 | 0 0 0 0 0 | 1 1 2 1 9 | 0 0 0 0 0 | 34 50 31 25 3 | 3 -14 2 12 32 | 5arm 5arm_loop_3arm 3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.11 0.37 0.20 0.20 0.36 | 2 5 2 4 4 | 43 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | ---------------------------------------------------------------------------------------------UGGCCAG----------------- | 37 | novel | ||||||||
| seed | ------------------------------------------------------------------------------------------------CCAGCGC-------------- | 1 | novel | ||||||||
| seed | ------------------------------------------------------------------UGCUGUC-------------------------------------------- | 1 | novel | ||||||||
| seed | -------------------------------------------------------------------------CCAUCGC------------------------------------- | 1 | novel | ||||||||
| seed | ---------------------------------------------------------------CCGUGCU----------------------------------------------- | 1 | novel | ||||||||
| seed | -----------------------------------CUCGGCG--------------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ---------------------------------------------------GGGCUCC----------------------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------------------------------CTGGCCAGCGCGGCAGCTCCT---- | 21 | 3 | - | 1 | 1 | 4 | 1 | - | 1 | 2 | |
| --------------------------------------------------------------------------------------------CTGGCCAGCGCGGCAGCTCC----- | 20 | 2 | 3 | - | 1 | - | - | 1 | 1 | 1 | |
| --------------------------------------------------------------------------------------------CTGGCCAGCGCGGCAGCTCCTC--- | 22 | 1 | 1 | - | 2 | 1 | - | 1 | 1 | 1 | |
| --------------------------------------------------------------------------------------------CTGGCCAGCGCGGCAGCTC------ | 19 | - | - | - | 1 | - | - | 1 | - | 2 | |
| --------------------------------------------------------------------------------------------CTGGCCAGCGCGGCAGCT------- | 18 | - | - | - | - | 1 | - | - | 1 | 1 | |
| -----------------------------------------------------------------------------------------------GCCAGCGCGGCAGCTCCTC--- | 19 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------TGGGCTCCGGGCTCCGTGC------------------------------------------------ | 19 | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------------ACTCGGCGGTGGCGGCTG----------------------------------------------------------------- | 18 | - | - | 1 | - | - | - | - | - | - | |
| --------------------------------------------------------------TCCGTGCTGTCCCATCGCTG----------------------------------- | 20 | - | 1 | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------GTGCTGTCCCATCGCTGCCCC------------------------------- | 21 | - | - | - | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------------CCCATCGCTGCCCCTTCTGG------------------------- | 20 | - | - | - | - | 1 | - | - | - | - | |
| rat | ggccgggggcgggcgacggcgagtcgggataaacactcggcggtggcggctgggctccgggctccgtgctgtcccatcgctgccccttctggCTGGCCAGCGCGGCAGCTCCTCggt | ||||||||||
| ********************************************************************************************************************* | |||||||||||
| rat | .(((((((((..(((..(((.((((((((........((((((((((((((((((.....)).))).))))..)))))))))....)))))))).)))..)))....))))).)))) | 0.970 -59.80 | |||||||||
| rat | chromosome:4:120822265:120822381:-1 | intergenic ## {SimpF: 1 Eponine, -1 Eponine} |
novel_cloningOK_multiarm_shortStem_5varHIGH (1 loci)
sblock9457 [novel_cloningOK_multiarm_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.056 | no | no | 0.25/0.58 | 19/26/0.71 | 2.2 0.0 0.0 0.0 0.0 0.0 | 1.7 0.0 0.0 0.0 0.0 0.0 | 16 1 1 1 1 1 | 0 0 0 0 0 0 | 4 1 1 1 1 1 | 0 0 0 0 0 0 | 0 11 24 34 25 15 | 16 11 1 -11 -7 6 | 5arm 5arm 5arm 5arm_loop 3arm_loop 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.24 0.32 0.26 0.57 0.45 0.21 | 2 3 3 12 6 2 | 21 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------AACUGAC---------------------------------------------------------------------------------- | 6 | novel | ||||
| seed | -----AUAACUG------------------------------------------------------------------------------------ | 4 | novel | ||||
| seed | ---AUAUAAC-------------------------------------------------------------------------------------- | 4 | miR-410 | ||||
| seed | -AUAUAUA---------------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | ---------------------------------------------------------------GACAGCU-------------------------- | 1 | novel | ||||
| seed | -----------------------------------UCAGGAG------------------------------------------------------ | 1 | novel | ||||
| seed | --------------------------------------------------GGACAUG--------------------------------------- | 1 | novel | ||||
| seed | ------------ACUUCUU----------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -------------------------CCUAUUG---------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T4S1 | T4S2 | T5S1 | |||
| ------TAACTGACTTCTTGGGCAAC---------------------------------------------------------------------- | 20 | - | - | 1 | - | 3 | |
| ----TATAACTGACTTCTTGGGCAACCT-------------------------------------------------------------------- | 24 | 1 | - | - | - | 2 | |
| --TATATAACTGACTTCTTGGGCAA----------------------------------------------------------------------- | 23 | - | - | - | - | 2 | |
| --TATATAACTGACTTCTTGGGCAACCT-------------------------------------------------------------------- | 26 | - | 1 | - | - | 1 | |
| TATATATAACTGACTTCTTG---------------------------------------------------------------------------- | 20 | - | - | - | - | 2 | |
| ------TAACTGACTTCTTGGGCAA----------------------------------------------------------------------- | 19 | - | - | - | - | 2 | |
| ----TATAACTGACTTCTTGGGCAA----------------------------------------------------------------------- | 21 | - | - | - | - | 1 | |
| -------------------------------------------------GGGACATGTTTCCTGACAGCTC------------------------- | 22 | - | - | - | - | 1 | |
| -----------GACTTCTTGGGCAACCTATTGT--------------------------------------------------------------- | 22 | - | - | - | - | 1 | |
| ------------------------ACCTATTGTATTCAGGAGA----------------------------------------------------- | 19 | - | - | - | - | 1 | |
| ----------------------------------TTCAGGAGATCAACTGGGACA----------------------------------------- | 21 | - | - | - | 1 | - | |
| --------------------------------------------------------------TGACAGCTCGGGTTGCTCA--------------- | 19 | - | - | - | - | 1 | |
| rat | TATATATAACTGACTTCTTGGGCAACCTATTGTATTCAGGAGATCAACTGGGACATGTTTCCTGACAGCTCGGGTTGCTCAgcatggctggctgtg | ||||||
| ************************************************************************************************ | |||||||
| rat | ....((((.((..((..(((((((((((...((..(((((((((............)))))))))..))..)))))))))))...))..)).)))) | 0.850 -29.30 | |||||
| rat | chromosome:5:114564626:114564721:-1 | intergenic ## {Repeats: dust 114564714 114564722 0 class=dust} |
novel_cloningOK_multiarm_shortStem_nonpairedHIGH_bulgeHIGH (1 loci)
block2311673 [novel_cloningOK_multiarm_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.194 | no | no | 0.38/0.45 | 20/24/1.00 | 0.0 0.0 | 0.0 0.0 | 28 1 | 0 0 | 3 1 | 0 0 | 3 14 | 11 -4 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.35 0.33 | 2 4 | 40 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----GGCGUGA-------------------------------------------------------------- | 29 | novel | ||
| seed | ---UGGCGUG--------------------------------------------------------------- | 5 | novel | ||
| seed | ---------GAUCAUU--------------------------------------------------------- | 5 | novel | ||
| seed | ---------------UGAAGUG--------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T5S1 | T5S2 | |||
| ---TGGCGTGATCATTGAAGTGA-------------------------------------------------- | 20 | - | 28 | - | |
| --TTGGCGTGATCATTGAAGTGA-------------------------------------------------- | 21 | - | 4 | 1 | |
| --------TGATCATTGAAGTGAATGCAG-------------------------------------------- | 21 | 1 | 4 | - | |
| --------------TTGAAGTGAATGCAGGTGAAGAAC----------------------------------- | 24 | - | 1 | - | |
| ---TGGCGTGATCATTGAAGTGAAT------------------------------------------------ | 22 | - | 1 | - | |
| rat | actTGGCGTGATCATTGAAGTGAatgcaggtgaagaacttcacctaccacattcgaatccatctcagtaggag | ||||
| ************************************************************************* | |||||
| rat | .(((.((.(((..((.((..((((((.(((((((....)))))))....))))))..)).)).)))))..))) | 0.950 -16.90 | |||
| rat | chromosome:8:57726129:57726201:-1 | intergenic |
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