other hairpins
novel_cloningOK_multiarm_shortStem_nonpairedHIGH_bulgeHIGH (1 loci)
novel_cloningOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)
block1061038 [novel_cloningOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.100 | no | no | 0.26/0.38 | 19/25/0.71 | 3.7 | 4.2 | 12 | 0 | 2 | 0 | 4 | -6 | 5arm_loop_3arm | 1 | nd | 0.37 | 4 | 17 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----GGAUGAA-------------------------------------------- | 8 | novel | |
| seed | ----------------AAGCUUA--------------------------------- | 5 | novel | |
| seed | ---------GAACAUU---------------------------------------- | 3 | novel | |
| seed | --------UGAACAU----------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------TAAGCTTACTTTGAGGTGACT-------------------- | 21 | 1 | 4 | |
| ----TGGATGAACATTAAGCTTACT------------------------------- | 21 | - | 5 | |
| ----TGGATGAACATTAAGCTTA--------------------------------- | 19 | - | 3 | |
| --------TGAACATTAAGCTTACTTTGAG-------------------------- | 22 | - | 1 | |
| --------TGAACATTAAGCTTACTTTG---------------------------- | 20 | - | 1 | |
| --------TGAACATTAAGCTTACTTTGAGGTG----------------------- | 25 | - | 1 | |
| -------ATGAACATTAAGCTTACTT------------------------------ | 19 | - | 1 | |
| rat | agtgTGGATGAACATTAAGCTTACTTTGAGGTGACTtagcttggtggcctctggac | |||
| ******************************************************** | ||||
| rat | .((.((((....(((((((((......(((....))))))))))))...)))).)) | 0.870 -16.00 | ||
| rat | chromosome:20:5525589:5525644:-1 | intergenic |
novel_cloningOK_shortStem_5varHIGH_nonpairedHIGH (1 loci)
block996130 [novel_cloningOK_shortStem_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.095 | no | no | 0.37/0.42 | 19/24/0.79 | 1.5 | 0.2 | 8 | 0 | 6 | 0 | 4 | 16 | 5arm | 1 | nd | 0.32 | 2 | 14 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------CAUGAUU-------------------------------------------------------------------------- | 8 | novel | |||||
| seed | -----CCUCAUG----------------------------------------------------------------------------- | 3 | novel | |||||
| seed | -----------GAUUUCA----------------------------------------------------------------------- | 2 | novel | |||||
| seed | ----UCCUCAU------------------------------------------------------------------------------ | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| -------TCATGATTTCACTTCAGCACA------------------------------------------------------------- | 21 | 1 | 1 | - | - | 4 | - | |
| ----TCCTCATGATTTCACTTCAGCACA------------------------------------------------------------- | 24 | - | - | - | 1 | 2 | - | |
| ----------TGATTTCACTTCAGCACAT------------------------------------------------------------ | 19 | - | - | - | - | - | 2 | |
| -------TCATGATTTCACTTCAGCAC-------------------------------------------------------------- | 20 | - | - | - | - | 1 | - | |
| -------TCATGATTTCACTTCAGCA--------------------------------------------------------------- | 19 | - | - | 1 | - | - | - | |
| ---TTCCTCATGATTTCACTTCAGCAC-------------------------------------------------------------- | 24 | - | - | - | - | 1 | - | |
| rat | ggctTCCTCATGATTTCACTTCAGCACATtcccaaggtggctctctctggatcagctgctttgactatttgagctgtaggagacaggcc | |||||||
| ***************************************************************************************** | ||||||||
| rat | ((((......((.((((.((.((((.((....(((((..(((.((....))..)))..)))))......)).)))).)))))))))))) | 0.800 -25.30 | ||||||
| rat | chromosome:1:124847026:124847114:1 | intergenic |
novel_cloningOK_shortStem_loopOverlap (1 loci)
block1067240 [novel_cloningOK_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.047 | no | no | 0.38/0.48 | 19/25/0.80 | 0.0 | 0.0 | 4 | 0 | 2 | 0 | 0 | -5 | 5arm_loop_3arm | 1 | nd | 0.27 | 3 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -AGUGCUU------------------------------ | 8 | novel | |
| seed | ---------------GGCCUCU---------------- | 1 | novel | |
| seed | ---------ACUCUUG---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| TAGTGCTTTACTCTTGGCCTCT---------------- | 22 | 1 | 4 | |
| TAGTGCTTTACTCTTGGCCTC----------------- | 21 | - | 1 | |
| TAGTGCTTTACTCTTGGCCTCTAAT------------- | 25 | - | 1 | |
| --------------TGGCCTCTAATATGTATGG----- | 19 | - | 1 | |
| TAGTGCTTTACTCTTGGCCT------------------ | 20 | - | 1 | |
| --------TACTCTTGGCCTCTAATATGTATG------ | 24 | - | 1 | |
| rat | TAGTGCTTTACTCTTGGCCTCTaatatgtatggcgctg | |||
| ************************************** | ||||
| rat | (((((((.(((..((((...))))...))).))))))) | 1.000 -9.80 | ||
| rat | chromosome:20:13202749:13202786:-1 | intergenic |
novel_cloningOK_shortStem_loopOverlap_nonpairedHIGH (1 loci)
block97587 [novel_cloningOK_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.165 | no | no | 0.48/0.53 | 19/21/0.91 | 0.0 1.0 | 0.0 0.5 | 8 2 | 0 0 | 3 1 | 0 0 | 4 10 | -1 -7 | 5arm_loop 5arm_loop | 1 1 | nd nd | 0.33 0.55 | 2 7 | 11 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----GAACUUC---------------------------------------------- | 9 | novel | ||
| seed | -----------CUCAUUG---------------------------------------- | 1 | novel | ||
| seed | -------------CAUUGGG-------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S2 | T5S1 | T5S2 | |||
| ----TGAACTTCTCATTGGGGTCTG--------------------------------- | 21 | 1 | 6 | 2 | |
| ----------TCTCATTGGGGTCTGCAAGA---------------------------- | 20 | - | 1 | - | |
| ------------TCATTGGGGTCTGCAAGAC--------------------------- | 19 | - | 1 | - | |
| rat | agcaTGAACTTCTCATTGGGGTCTGcaagacaatacaaagatctgatggaatttcggc | ||||
| ********************************************************** | |||||
| rat | .((.((((.(((.(((..((.(((..............)))))..)))))).)))))) | 1.000 -12.54 | |||
| rat | chromosome:10:92631927:92631984:1 | intergenic |
novel_cloningOK_shortStem_loopOverlap_randfoldOK_bulgeHIGH (1 loci)
block1060506 [novel_cloningOK_shortStem_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.37/0.50 | 19/24/0.77 | 0.0 | 1.2 | 16 | 0 | 5 | 0 | 4 | -5 | 3arm | 1 | nd | 0.29 | 4 | 26 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------------------CGUCUGC-------------------- | 23 | novel | ||||
| seed | --------------------------------GUCUGCU------------------- | 1 | novel | ||||
| seed | -----------------------------CUCGUCU---------------------- | 1 | novel | ||||
| seed | ------------------------------------GCUCACU--------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T4S2 | T5S1 | |||
| ------------------------------TCGTCTGCTCACTTGTCTTTAGAA---- | 24 | 1 | 2 | 1 | 1 | 12 | |
| ------------------------------TCGTCTGCTCACTTGTCTT--------- | 19 | 1 | - | - | - | 4 | |
| -------------------------------CGTCTGCTCACTTGTCTTTAGAA---- | 23 | - | - | - | - | 1 | |
| -----------------------------------TGCTCACTTGTCTTTAGAA---- | 19 | - | - | - | - | 1 | |
| ----------------------------TCTCGTCTGCTCACTTGTCT---------- | 20 | - | - | - | - | 1 | |
| ------------------------------TCGTCTGCTCACTTGTCTTTAGA----- | 23 | - | - | - | - | 1 | |
| rat | tagaatctaagaaaagtgagcactcctatcTCGTCTGCTCACTTGTCTTTAGAAtttg | ||||||
| ********************************************************** | |||||||
| rat | ((((.(((((((.(((((((((.............))))))))).)))).))).)))) | 1.000 -17.12 | |||||
| rat | chromosome:20:5507464:5507521:-1 | intergenic |
novel_cloningOK_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
block1820947 [novel_cloningOK_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.35/0.37 | 19/20/0.85 | 0.0 | 0.0 | 26 | 0 | 4 | 0 | 2 | -5 | 3arm_loop | 2 | nd | 0.35 | 4 | 33 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------------------GCAAUCU-------------- | 31 | novel | |||
| seed | -----------------------CAAUCUU------------- | 2 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T4S1 | T5S1 | |||
| ---------------------TGCAATCTTTCTATGTCTCA-- | 20 | 1 | 1 | - | 26 | |
| ---------------------TGCAATCTTTCTATGTCTC--- | 19 | - | - | 1 | 2 | |
| ----------------------GCAATCTTTCTATGTCTCA-- | 19 | - | - | - | 2 | |
| rat | atgagacaagactgaacagaaTGCAATCTTTCTATGTCTCAtg | |||||
| ******************************************* | ||||||
| ----------------------------------------------------- | ENSRNOT00000043690 ENSRNOG00000029050 | |||||
| rat | (((((((((((..((...........))..))).)))))))). | 1.000 -11.40 | ||||
| rat | chromosome:5:25625980:25626022:1 | Opposite_strand|Intronic_coding|ENSRNOT00000043690|ENSRNOG00000029050 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000061413|ENSRNOG00000029050 ## ENSRNOG00000029050|protein_coding|| |
novel_gcHIGH_multiarm_DicerNOK (1 loci)
sblock10435 [novel_gcHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.699 | no | no | 0.90/0.91 | 21/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 14 | 34 24 | 5arm 3arm | 2 2 | nd nd | 0.30 0.29 | 3 3 | 2 | 2 | -12 | -15 |
| reads | miRBase family seed | |||
| seed | -GCUCCCC--------------------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------------------------GCGGGGC--------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T2S1 | |||
| ------------------------------------------------------------------------------------CGCGGGGCGCACAGGGCGCGG-------------- | 21 | 1 | - | |
| GGCTCCCCGCCAGCCCCGGCCCC------------------------------------------------------------------------------------------------ | 23 | - | 1 | |
| rat | GGCTCCCCGCCAGCCCCGGCCCCgcgcagccgcggctgctccggcgcttccccgcgccgcgccgggcagggcgcacgtggtgggCGCGGGGCGCACAGGGCGCGGaatggcggcgcgcg | |||
| *********************************************************************************************************************** | ||||
| rat | .((...((((((...(((((((.((((..(((((.((((..((((((((.((((.((...))))))..)))))).))..)))).))))).))))...)))).)))..))))))...)). | 0.910 -73.00 | ||
| rat | chromosome:6:133457779:133457897:1 | intergenic ## {Repeats: trf 15 38 0 class=trf,GC_rich 24 47 1 class=Low_complexity,GC_rich 1 91 1 class=Low_complexity,dust 133457728 133457751 0 class=dust} ## {SimpF: -1 Eponine} |
novel_gcHIGH_multiarm_DicerNOK_shortStem (1 loci)
sblock2280 [novel_gcHIGH_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.741 | no | no | 0.68/0.94 | 18/22/0.71 | 0.0 0.0 | 0.0 0.0 | 5 1 | 0 0 | 2 1 | 0 0 | 1 17 | 32 26 | 5arm 3arm | 1 1 | nd nd | 0.36 0.06 | 3 1 | 7 | 3 | -14 | -18 |
| reads | miRBase family seed | ||||
| seed | --GUGCUGC--------------------------------------------------------------------------------------------------------------- | 5 | novel | ||
| seed | -----CUGCAGA------------------------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | --------------------------------------------------------------------------------------CGCCCGC--------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T5S2 | |||
| -GGTGCTGCAGATGTGGCGGAGC------------------------------------------------------------------------------------------------- | 22 | - | 5 | - | |
| ----GCTGCAGATGTGGCGGAGC------------------------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| -------------------------------------------------------------------------------------CCGCCCGCCCCGGCCCTC----------------- | 18 | 1 | - | - | |
| rat | cGGTGCTGCAGATGTGGCGGAGCggccgggcgccgggcggccgcgccaggggagctcgtgccccgtgagcctcgcgctccggcccccgcccgccccggccctccccctcgcccgctctcc | ||||
| ************************************************************************************************************************ | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000006680 ENSRNOG00000004766 NP_001100448.1 | ||||
| rat | .((((..((.((...((.((((.(((((((.((.((((((((((((((.(((.((....))))).))......))))...))))...))))))))))))))))))).)))).)))).... | 0.450 -62.70 | |||
| rat | chromosome:10:11100868:11100987:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000006680|ENSRNOG00000004766 ## ENSRNOG00000004766|protein_coding|NP_001100448.1|GLIS family zinc finger 2 [Source:RefSeq_peptide;Acc:NP_001100448] ## {Repeats: GC_rich 1 17 -1 class=Low_complexity,GC_rich 1 26 -1 class=Low_complexity,GC_rich 25 26 -1 class=Low_complexity,dust 11100885 11100903 0 class=dust,GC_rich 1 23 -1 class=Low_complexity} ## {SimpF: oe = 0.84 0 CpG} |
novel_gcHIGH_nonpairedHIGH_bulgeHIGH (1 loci)
block2589011 [novel_gcHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.751 | no | no | 0.95/0.95 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 18 | 11 | 5arm | 1 | nd | 0.45 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------GGGGGGG-------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ------------------GGGGGGGGCGGGCGGGGGGA-------------------------------------------------------------- | 20 | 1 | |
| rat | acttgaaccttgcgggggGGGGGGGGCGGGCGGGGGGAgatacaggatgacttacagaaagacctactctgagcatatgtcagcctcgagggtttcaagc | ||
| **************************************************************************************************** | |||
| -------------------------------------------------------------------------------------------------------------- | ENSRNOT00000025474 ENSRNOG00000018830 Aff3_predicted | ||
| -------------------------------------------------------------------------------------------------------------- | ENSRNOT00000042227 ENSRNOG00000018830 Aff3_predicted | ||
| rat | .((((((((((.(((((..((....((...(((((..((........((.....)).......)).))))).)).....))..))))))))))).)))). | 0.830 -26.06 |
| rat | chromosome:9:37347590:37347689:1 | Opposite_strand|Intronic_coding|ENSRNOT00000042227|ENSRNOG00000018830 ## ENSRNOG00000018830|protein_coding|Aff3_predicted| ## {Repeats: GC_rich 7 26 1 class=Low_complexity,GC_rich 1 26 1 class=Low_complexity,dust 37347603 37347622 0 class=dust} |
novel_gcHIGH_randfoldOK (1 loci)
block2251996 [novel_gcHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.95/0.95 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 8 | 10 | 5arm | 1 | nd | 0.29 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------GGGGACG---------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| --------GGGGGACGCGGGGGGGGGGGG--------------------------------------------------------- | 21 | 1 | |
| rat | gagaaggaGGGGGACGCGGGGGGGGGGGGcgaggagggcgtggtcaccctcgtgcctgctgcctgcggcggccctgctgaagctca | ||
| ************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000013538 ENSRNOG00000009884 Lgals1 | ||
| rat | (((.((.((((...((((((.((.(((.((((((..(((...)))..)))))).))).)).))))))....)))).))....))). | 1.000 -49.70 |
| rat | chromosome:7:116895291:116895376:1 | Same_strand|Intronic_coding|ENSRNOT00000013538|ENSRNOG00000009884 ## ENSRNOG00000009884|protein_coding|Lgals1|Galectin-1 (Lectin galactoside-binding soluble 1) (Beta-galactoside- binding lectin L-14-I) (Lactose-binding lectin 1) (S-Lac lectin 1) (Galaptin) (14 kDa lectin) (RL 14.5). [Source:UniProtKB/Swiss-Prot;Acc:P11762] ## {Repeats: dust 116895308 116895319 0 class=dust} |
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