other hairpins
novel_lenNOK_Multihit_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH (1 loci)
novel_lenNOK_Multihit_shortStem_5varHIGH_randfoldOK (1 loci)
block2085902 [novel_lenNOK_Multihit_shortStem_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.50/0.57 | 23/26/0.50 | 1.5 | 0.0 | 2 | 0 | 2 | 0 | 0 | 30 | 3arm | 11 | nd | 0.23 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------------------------------AUCCCAC------------------ | 1 | novel | |
| seed | ------------------------------------------------------------------------------------------------CCACUGU--------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| -----------------------------------------------------------------------------------------------CCCACTGTCTCCAAGACACACTG | 23 | 1 | - | |
| --------------------------------------------------------------------------------------------AATCCCACTGTCTCCAAGACACACTG | 26 | - | 1 | |
| rat | cagttgtgttgaggtagtctggggaaaatctcagttccacagctctaccctgctaagtggtacttgtgtagtggtaagctggttagtgtgacAATCCCACTGTCTCCAAGACACACTG | |||
| ********************************************************************************************************************** | ||||
| rat | (((.(((((((((..(((...((((...((.((......(((((.((((((((((((.....)))).)))).))))))))).....)).))...)))))))..)))...))))))))) | 0.910 -41.10 | ||
| rat | chromosome:7:13217563:13217680:-1 | intergenic |
novel_lenNOK_Multihit_shortStem_5varHIGH_randfoldOK_bulgeHIGH (1 loci)
block1593737 [novel_lenNOK_Multihit_shortStem_5varHIGH_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.61/0.62 | 18/24/0.50 | 3.0 | 0.0 | 2 | 0 | 2 | 0 | 4 | 2 | 3arm | 13 | nd | 0.25 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------AGCUGGC-------------------- | 1 | novel | |
| seed | -----------------------------------------------------------CCGACCU-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| ----------------------------------------------------CAGCTGGCCGACCTGTACAAGTCC---- | 24 | - | 1 | |
| ----------------------------------------------------------GCCGACCTGTACAAGTCC---- | 18 | 1 | - | |
| rat | tgacctggacttcaagtctccagatgatgccagctggtacatcacacccgacCAGCTGGCCGACCTGTACAAGTCCttca | |||
| ******************************************************************************** | ||||
| rat | .((...((((((...((...(((.....((((((((((............))))))))))....))).)))))))).)). | 0.450 -26.60 | ||
| rat | chromosome:4:154051799:154051878:-1 | intergenic |
novel_lenNOK_Multihit_shortStem_5varHIGH_randfoldOK_nonpairedHIGH (1 loci)
block991537 [novel_lenNOK_Multihit_shortStem_5varHIGH_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.38/0.42 | 19/24/0.50 | 2.5 | 0.0 | 2 | 0 | 2 | 0 | 3 | 20 | 5arm | 20 | nd | 0.42 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----UACUACA------------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------CACCUAU------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| --------ACACCTATTAGTCCTACTC-------------------------------------------------------------------------------- | 19 | 1 | - | |
| ---ATACTACACCTATTAGTCCTACTC-------------------------------------------------------------------------------- | 24 | - | 1 | |
| rat | gacATACTACACCTATTAGTCCTACTCtgccttcgatgagatctgattcaaatatcatataagattctcatccacattagatgaacggactcttaagtactctgtct | |||
| *********************************************************************************************************** | ||||
| rat | ((((...(((...((..(((((...((((.....(((((((((((((......)))).....))).)))))).....)))).....)))))..)).)))...)))). | 0.920 -21.50 | ||
| rat | chromosome:1:111468040:111468146:1 | intergenic |
novel_lenNOK_Multihit_shortStem_loopOverlap_randfoldOK_nonpairedHIGH (1 loci)
block633570 [novel_lenNOK_Multihit_shortStem_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.60/0.60 | 25/25/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | -2 | 5arm_loop | 16 | nd | 0.32 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -CACUCUG------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ACACTCTGGCCACGTGCACTACTCC------------------------------------------------------- | 25 | 1 | |
| rat | ACACTCTGGCCACGTGCACTACTCCacatctccacactctagctgtgcactactccacatctccacactctggccacgtg | ||
| ******************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000021506 ENSRNOG00000015980 Dclre1c | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000021771 ENSRNOG00000015980 Dclre1c | ||
| rat | .(((..((((((.((((((..((.................))..))))))....................)))))).))) | 0.650 -16.03 |
| rat | chromosome:17:85908014:85908093:-1 | Same_strand|Intronic_coding|ENSRNOT00000021506|ENSRNOG00000015980 ## ENSRNOG00000015980|protein_coding|Dclre1c|Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein). [Source:UniProtKB/Swiss-Prot;Acc:Q5XIX3] ## {Repeats: trf 762 787 0 class=trf} |
novel_lenNOK_Multihit_shortStem_mirtron_nonpairedHIGH_bulgeHIGH (1 loci)
block1023073 [novel_lenNOK_Multihit_shortStem_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.181 | no | no | 0.47/0.47 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | 22 | 5arm | 84 | 3 | 0.47 | 5 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----CCUCAAG------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| ---CCCTCAAGATTGTCAGCAA------------------------------------------------------------------- | 19 | 1 | |
| rat | actCCCTCAAGATTGTCAGCAAttcatcctgcaccaccaactgcttagcccccctggtcaaggtcatccatgacaactttgacattgtg | ||
| ***************************************************************************************** | |||
| --------------------------------------------------------------------------------------------------- | ENSRNOT00000054950 ENSRNOG00000024414 NP_001099770.1 | ||
| --------------------------------------------------------------------------------------------------- | ENSRNOT00000033517 ENSRNOG00000024414 NP_001099770.1 | ||
| --------------------------------------------------------------------------------------------------- | ENSRNOT00000033490 ENSRNOG00000024414 NP_001099770.1 | ||
| ++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000042763 ENSRNOG00000020449 | ||
| rat | ......((((..((((((.........(((..((((......((...)).....))))..))).......))))))..))))....... | 0.400 -15.39 |
| rat | chromosome:1:189772361:189772449:1 | Opposite_strand|Intronic_coding|ENSRNOT00000033517|ENSRNOG00000024414 ## Same_strand|Boundary_coding|ENSRNOT00000042763|ENSRNOG00000020449 ## ENSRNOG00000020449|protein_coding|| ## ENSRNOG00000024414|protein_coding|NP_001099770.1|arginine-tRNA-protein transferase 1 [Source:RefSeq_peptide;Acc:NP_001099770] |
novel_lenNOK_cloningHIGH_5varHIGH (1 loci)
block1870866 [novel_lenNOK_cloningHIGH_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.027 | no | no | 0.17/0.26 | 18/25/0.05 | 1.1 | 1.1 | 37 | 0 | 10 | 0 | 26 | 3 | 3arm | 2 | nd | 0.05 | 1 | 88 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ------------------------------------------------------------------CAGACAU--------------------------------------- | 28 | novel | |||||||||
| seed | -------------------------------------------------------------------AGACAUG-------------------------------------- | 27 | novel | |||||||||
| seed | --------------------------------------------------------------------GACAUGA------------------------------------- | 26 | novel | |||||||||
| seed | ---------------------------------------------------------------------ACAUGAA------------------------------------ | 4 | novel | |||||||||
| seed | ------------------------------------------------------------------------UGAACUA--------------------------------- | 2 | novel | |||||||||
| seed | ------------------------------------------------------------------------------AAAAUUU--------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------CAGACATGAACTAAAATTT--------------------------- | 19 | 3 | - | 1 | 1 | 6 | 6 | 1 | 3 | 3 | 3 | |
| -----------------------------------------------------------------ACAGACATGAACTAAAATT---------------------------- | 19 | - | - | 3 | 2 | 6 | 2 | 4 | 2 | 4 | 2 | |
| -------------------------------------------------------------------AGACATGAACTAAAATTTA-------------------------- | 19 | 1 | - | 2 | - | 11 | 3 | 1 | - | 3 | 2 | |
| --------------------------------------------------------------------GACATGAACTAAAATTTAA------------------------- | 19 | - | - | - | - | 1 | - | 1 | - | 1 | 1 | |
| -------------------------------------------------------------------AGACATGAACTAAAATTT--------------------------- | 18 | - | - | - | - | 1 | 1 | - | - | 1 | - | |
| -----------------------------------------------------------------------ATGAACTAAAATTTAATTCTGACA----------------- | 24 | - | 1 | - | - | - | - | - | 1 | - | - | |
| -----------------------------------------------------------------------------TAAAATTTAATTCTGACA----------------- | 18 | - | - | - | - | - | - | 1 | - | - | - | |
| -----------------------------------------------------------------ACAGACATGAACTAAAATTTAATTC---------------------- | 25 | - | - | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------------ACAGACATGAACTAAAATTT--------------------------- | 20 | - | - | 1 | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------ACAGACATGAACTAAAATTTAATT----------------------- | 24 | - | - | - | - | - | 1 | - | - | - | - | |
| rat | cagcctcctagtctattttgagttaatgttattttgcttcatgttcagtgttaagaactttacttACAGACATGAACTAAAATTTAattctgacagaactagttacagctgt | |||||||||||
| **************************************************************************************************************** | ||||||||||||
| rat | ((((...(((((((.((..(((((((....((((((.((((((((...((.((((.......)))))))))))))).))))))))))))).)).))).)))).....)))). | 1.000 -24.80 | ||||||||||
| rat | chromosome:5:128347589:128347700:1 | intergenic |
novel_lenNOK_cloningHIGH_5varHIGH_loopOverlap_nonpairedHIGH (1 loci)
block1973119 [novel_lenNOK_cloningHIGH_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.432 | no | no | 0.37/0.50 | 18/26/0.38 | 2.0 | 0.6 | 87 | 0 | 9 | 0 | 19 | -24 | 3arm | 1 | nd | 0.47 | 3 | 127 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | ---------------------------------------GAGAUCG-------------------------------------- | 82 | novel | ||||||||
| seed | -----------------------------------------------ACAUCAU------------------------------ | 18 | novel | ||||||||
| seed | --------------------------------------------CGUACAU--------------------------------- | 16 | novel | ||||||||
| seed | ---------------------------------------------GUACAUC-------------------------------- | 3 | novel | ||||||||
| seed | ----------------------------------------AGAUCGU------------------------------------- | 3 | novel | ||||||||
| seed | ---------------------------------AAAGAUG-------------------------------------------- | 1 | novel | ||||||||
| seed | ---------------------------------------------------CAUGGUU-------------------------- | 1 | novel | ||||||||
| seed | ------------------------------------GAUGAGA----------------------------------------- | 1 | novel | ||||||||
| seed | ------------------------------------------AUCGUAC----------------------------------- | 1 | miR-487b | ||||||||
| seed | ------------------------------------------------------GGUUCAG----------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------TGAGATCGTACATCATGGTTCAGGTG-------------------- | 26 | 1 | - | - | - | - | - | - | 34 | - | |
| ----------------------------------------------TACATCATGGTTCAGGTGC------------------- | 19 | - | 1 | - | - | - | - | - | 14 | 1 | |
| --------------------------------------TGAGATCGTACATCATGGTTCAGGT--------------------- | 25 | - | 2 | - | - | - | - | - | 14 | - | |
| --------------------------------------TGAGATCGTACATCATGGTTCAGG---------------------- | 24 | - | 1 | - | - | - | - | - | 13 | - | |
| -------------------------------------------TCGTACATCATGGTTCAGGTG-------------------- | 21 | - | - | - | - | - | 2 | - | 12 | - | |
| --------------------------------------TGAGATCGTACATCATGGT--------------------------- | 19 | - | - | - | 1 | - | - | 1 | 3 | - | |
| --------------------------------------TGAGATCGTACATCATGGTTCA------------------------ | 22 | - | - | - | - | 1 | - | - | 3 | - | |
| --------------------------------------TGAGATCGTACATCATGGTTC------------------------- | 21 | - | - | - | 1 | - | - | - | 2 | - | |
| --------------------------------------TGAGATCGTACATCATGGTTCAG----------------------- | 23 | - | - | - | 1 | - | - | - | 2 | - | |
| --------------------------------------------CGTACATCATGGTTCAGGTG-------------------- | 20 | 1 | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------GAGATCGTACATCATGGTTCAGGT--------------------- | 24 | - | - | - | - | - | - | - | 2 | - | |
| ----------------------------------------------TACATCATGGTTCAGGTGCCTTTCC------------- | 25 | 1 | - | - | - | - | - | - | 1 | - | |
| --------------------------------------TGAGATCGTACATCATGGTT-------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------TCGTACATCATGGTTCAG----------------------- | 18 | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------AGATGAGATCGTACATCAT------------------------------ | 19 | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------GATCGTACATCATGGTTCAG----------------------- | 20 | - | 1 | - | - | - | - | - | - | - | |
| -------------------------------------------TCGTACATCATGGTTCAGG---------------------- | 19 | - | - | 1 | - | - | - | - | - | - | |
| --------------------------------------------------TCATGGTTCAGGTGCCTTTCCAAA---------- | 24 | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------TGGTTCAGGTGCCTTTCCAAA---------- | 21 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------CAAAGATGAGATCGTACATCA------------------------------- | 21 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------CGTACATCATGGTTCAGGT--------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------TGAGATCGTACATCATGG---------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | |
| ---------------------------------------GAGATCGTACATCATGGTTCAG----------------------- | 22 | - | - | - | - | - | - | - | 1 | - | |
| rat | ttgaaatcaggactgttctggaaattccaccacaaagaTGAGATCGTACATCATGGTTCAGGTGCctttccaaagaccttcagg | ||||||||||
| ************************************************************************************ | |||||||||||
| rat | ((((....(((.((....((((((...((((((...((((........))))...))...))))..)))))).)).))))))). | 0.870 -16.80 | |||||||||
| rat | chromosome:6:122563706:122563789:-1 | intergenic |
novel_lenNOK_cloningHIGH_5varHIGH_nonpairedHIGH (1 loci)
block1061089 [novel_lenNOK_cloningHIGH_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.637 | no | no | 0.26/0.63 | 18/26/0.46 | 0.0 2.6 1.5 | 0.0 2.9 0.5 | 1 35 2 | 0 0 0 | 1 7 1 | 0 0 0 | 33 11 6 | 0 6 24 | 3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.37 0.45 0.62 | 2 4 8 | 57 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------------------------------------CCUAACA---------------------------- | 23 | novel | ||||||
| seed | --------------------------------------------------------------------AACAGAC------------------------- | 14 | novel | ||||||
| seed | -------------------------------------------------------CCUGUCC-------------------------------------- | 10 | novel | ||||||
| seed | ----------------------------------------------------------GUCCUGU----------------------------------- | 3 | novel | ||||||
| seed | ---------------------------------------------------------------GUCCUAA------------------------------ | 2 | novel | ||||||
| seed | ------------------------------------------------------------CCUGUCC--------------------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------------------------ACUAUAA-------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------CGAGCUC-------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------------------------ACAGACU------------------------ | 1 | novel | ||||||
| seed | ----------------------------------------------------------------------------AUAACAU----------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| ----------------------------------------------------------------TCCTAACAGACTATAACAT----------------- | 19 | - | - | 2 | 1 | - | 1 | 19 | |
| ------------------------------------------------------TCCTGTCCTGTCCTAACAGACT------------------------ | 22 | 2 | 1 | - | - | 1 | - | 6 | |
| -------------------------------------------------------------------TAACAGACTATAACATATGAGT----------- | 22 | - | - | - | - | - | - | 10 | |
| ---------------------------------------------------------TGTCCTGTCCTAACAGACT------------------------ | 19 | - | - | - | - | - | - | 3 | |
| -------------------------------------------------------------------TAACAGACTATAACATATGAG------------ | 21 | - | 1 | - | - | - | - | 1 | |
| --------------------------------------------------------------TGTCCTAACAGACTATAACA------------------ | 20 | - | - | - | - | - | - | 2 | |
| -------------------------------------------------------------------TAACAGACTATAACATATGAGTACAG------- | 26 | - | - | - | - | - | - | 2 | |
| ---------------------------------------------------------------------------TATAACATATGAGTACAGA------ | 19 | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------TCCTGTCCTAACAGACTATAACA------------------ | 23 | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------------GACTATAACATATGAGTACAG------- | 21 | - | - | - | - | - | - | 1 | |
| ------------------------------------------------TCGAGCTCCTGTCCTGTCC--------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------AACAGACTATAACATATG-------------- | 18 | - | - | - | - | 1 | - | - | |
| rat | cctgtctaccatctcaagttcaaaggttaaggcaagtagcaagacggctcgagcTCCTGTCCTGTCCTAACAGACTATAACATATGAGTacagagggagg | ||||||||
| **************************************************************************************************** | |||||||||
| rat | (((.(((.....((((((((...(((...(((..((.(((..((....))..))).))..)))..)))....))))........)))).....))).))) | 0.610 -21.30 | |||||||
| rat | chromosome:20:5527402:5527501:-1 | intergenic |
novel_lenNOK_cloningHIGH_5varHIGH_nonpairedHIGH_bulgeHIGH (1 loci)
block1093687 [novel_lenNOK_cloningHIGH_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.041 | no | no | 0.40/0.52 | 18/25/0.07 | 5.0 | 5.2 | 74 | 0 | 4 | 0 | 5 | 7 | 5arm | 1 | nd | 0.42 | 5 | 98 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------GAAAUGC-------------------------------------------------------------- | 47 | novel | |||
| seed | --------CCACAGU-------------------------------------------------------------------------- | 22 | novel | |||
| seed | ------GUCCACA---------------------------------------------------------------------------- | 14 | novel | |||
| seed | -------------------UGAAAUG--------------------------------------------------------------- | 10 | miR-203 | |||
| seed | ------------AGUAGUC---------------------------------------------------------------------- | 3 | novel | |||
| seed | ---GUUGUCC------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ------------------CUGAAAU---------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T4S1 | T4S2 | T5S1 | |||
| -------------------TGAAATGCAAGTGCTTCGG--------------------------------------------------- | 19 | - | 1 | 1 | 34 | |
| -------TCCACAGTAGTCTGAAATG--------------------------------------------------------------- | 19 | 1 | - | 1 | 17 | |
| -----TGTCCACAGTAGTCTGAAA----------------------------------------------------------------- | 19 | - | - | 2 | 12 | |
| -------------------TGAAATGCAAGTGCTTCG---------------------------------------------------- | 18 | - | - | - | 11 | |
| ------------------CTGAAATGCAAGTGCTTCG---------------------------------------------------- | 19 | - | - | - | 9 | |
| -------TCCACAGTAGTCTGAAATGC-------------------------------------------------------------- | 20 | 1 | - | - | 2 | |
| -----------CAGTAGTCTGAAATGCAAGTGCT------------------------------------------------------- | 23 | - | - | - | 1 | |
| ------------------CTGAAATGCAAGTGCTTC----------------------------------------------------- | 18 | - | - | - | 1 | |
| -----------CAGTAGTCTGAAATGCAAGT---------------------------------------------------------- | 20 | - | - | - | 1 | |
| --TGTTGTCCACAGTAGTCTGA------------------------------------------------------------------- | 20 | - | - | - | 1 | |
| -----------CAGTAGTCTGAAATGCAAGTG--------------------------------------------------------- | 21 | - | - | - | 1 | |
| -----------------TCTGAAATGCAAGTGCTTCGGCCCT----------------------------------------------- | 25 | - | - | - | 1 | |
| rat | tgtgtTGTCCACAGTAGTCTGAAATGCAAGTGCTTCGGcccttgggcctcgtactaagggcggcagtgtggaggctgtgtcaaggcaca | |||||
| ***************************************************************************************** | ||||||
| rat | .(((((...((((((..(((.....(((..((((...((((((((........)))))))))))).)))))).))))))....))))). | 0.940 -34.00 | ||||
| rat | chromosome:20:5545064:5545152:1 | intergenic |
novel_lenNOK_cloningHIGH_Multihit_loopOverlap (1 loci)
block963894 [novel_lenNOK_cloningHIGH_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.655 | no | no | 0.21/0.38 | 18/24/0.06 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 73 1 | 0 0 0 | 1 5 1 | 0 0 0 | 0 16 24 | 7 -9 -16 | 5arm 5arm_loop 5arm_loop | 23 30 32 | nd nd nd | 0.16 0.53 0.94 | 1 10 17 | 107 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -----------------ACAACAG-------------------------------------------------------- | 88 | novel | ||||
| seed | -----------UCAAAUA-------------------------------------------------------------- | 4 | novel | ||||
| seed | ------------CAAAUAC------------------------------------------------------------- | 2 | novel | ||||
| seed | ---------AGUCAAA---------------------------------------------------------------- | 2 | novel | ||||
| seed | -------AGAGUCA------------------------------------------------------------------ | 2 | novel | ||||
| seed | ---------------AUACAAC---------------------------------------------------------- | 2 | novel | ||||
| seed | ------CAGAGUC------------------------------------------------------------------- | 1 | novel | ||||
| seed | -------------------------GAAAUAU------------------------------------------------ | 1 | novel | ||||
| seed | --------GAGUCAA----------------------------------------------------------------- | 1 | novel | ||||
| seed | -------------------AACAGUG------------------------------------------------------ | 1 | novel | ||||
| seed | -GACAACA------------------------------------------------------------------------ | 1 | novel | ||||
| seed | ----------GUCAAAU--------------------------------------------------------------- | 1 | novel | ||||
| seed | ------------------CAACAGU------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | |||
| ----------------TACAACAGTGAAATATAAG--------------------------------------------- | 19 | 2 | 9 | 1 | - | 73 | |
| ----------GTCAAATACAACAGTGAAA--------------------------------------------------- | 19 | - | - | - | - | 4 | |
| ----------------TACAACAGTGAAATATAA---------------------------------------------- | 18 | 1 | - | - | - | 1 | |
| -----------TCAAATACAACAGTGAAAT-------------------------------------------------- | 19 | - | - | - | - | 2 | |
| --------GAGTCAAATACAACAGTGA----------------------------------------------------- | 19 | - | - | - | 1 | 1 | |
| --------------AATACAACAGTGAAATATA----------------------------------------------- | 19 | - | - | - | - | 2 | |
| ------CAGAGTCAAATACAACAGTGA----------------------------------------------------- | 21 | - | - | - | - | 1 | |
| ------CAGAGTCAAATACAACAGTGAAA--------------------------------------------------- | 23 | - | - | - | - | 1 | |
| -------AGAGTCAAATACAACAGTGA----------------------------------------------------- | 20 | - | - | - | - | 1 | |
| ----------------TACAACAGTGAAATATAAGCC------------------------------------------- | 21 | - | - | - | - | 1 | |
| ---------AGTCAAATACAACAGTGAA---------------------------------------------------- | 19 | - | - | - | - | 1 | |
| -----ACAGAGTCAAATACAACAGTGAAA--------------------------------------------------- | 24 | - | - | - | 1 | - | |
| ------------------CAACAGTGAAATATAAGCCT------------------------------------------ | 20 | - | - | - | - | 1 | |
| ------------------------TGAAATATAAGCCTACTC-------------------------------------- | 18 | 1 | - | - | - | - | |
| -----------------ACAACAGTGAAATATAAGC-------------------------------------------- | 19 | - | - | - | - | 1 | |
| TGACAACAGAGTCAAATAC------------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| rat | tgacaacagagtcaaaTACAACAGTGAAATATAAGcctactcccaagatccatacgttgttgttatttatttttttgcac | ||||||
| ******************************************************************************** | |||||||
| ------------------------------------------------------------------------------------------ | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | ||||||
| rat | ((.(((.(((((.(((((((((((((............................))))))))).))))))))).))))). | 0.840 -8.49 | |||||
| rat | chromosome:1:52000287:52000366:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
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