other hairpins
novel_lenNOK_cloningHIGH_Multihit_loopOverlap (1 loci)
novel_lenNOK_cloningHIGH_Multihit_nonpairedHIGH (1 loci)
block843106 [novel_lenNOK_cloningHIGH_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.069 | no | no | 0.22/0.35 | 18/21/0.02 | 0.0 0.0 | 0.0 0.0 | 73 1 | 0 0 | 4 1 | 0 0 | 7 0 | 16 24 | 3arm 3arm | 30 32 | nd nd | 0.47 0.35 | 4 3 | 91 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------------------------ACAACAG------------------ | 88 | novel | |||
| seed | ----------------------------------------------------------------------------GAAAUAU---------- | 1 | novel | |||
| seed | ----------------------------------------------------------------------AACAGUG---------------- | 1 | novel | |||
| seed | ---------------------------------------------------------------------CAACAGU----------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S2 | T5S1 | |||
| -------------------------------------------------------------------TACAACAGTGAAATATAAG------- | 19 | 2 | 9 | 1 | 73 | |
| -------------------------------------------------------------------TACAACAGTGAAATATAA-------- | 18 | 1 | - | - | 1 | |
| --------------------------------------------------------------------ACAACAGTGAAATATAAGC------ | 19 | - | - | - | 1 | |
| ---------------------------------------------------------------------CAACAGTGAAATATAAGCCT---- | 20 | - | - | - | 1 | |
| -------------------------------------------------------------------TACAACAGTGAAATATAAGCC----- | 21 | - | - | - | 1 | |
| ---------------------------------------------------------------------------TGAAATATAAGCCTACTC | 18 | 1 | - | - | - | |
| rat | agtgggcaggatacacactggccacaacatgtcttctcaccttttgtataacaactgagtcaaatccTACAACAGTGAAATATAAGcctactc | |||||
| ********************************************************************************************* | ||||||
| rat | (((((((...(((..(((((...............((((....(((.....))).)))).............)))))...)))..))))))). | 0.610 -18.09 | ||||
| rat | chromosome:1:49036084:49036176:-1 | intergenic |
novel_lenNOK_cloningHIGH_mirtron (1 loci)
block2539634 [novel_lenNOK_cloningHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.070 | no | no | 0.47/0.50 | 18/23/0.64 | 0.0 | 1.6 | 98 | 0 | 3 | 0 | 9 | 13 | 3arm | 1 | 1 | 0.17 | 2 | 106 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------CCAUGUG------------------------ | 106 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S2 | |||
| -----------------------------------------------------------ACCATGTGTTCTCTGTCCACA----------- | 21 | 16 | 8 | - | |
| -----------------------------------------------------------ACCATGTGTTCTCTGTCCAC------------ | 20 | 14 | 8 | - | |
| -----------------------------------------------------------ACCATGTGTTCTCTGTCC-------------- | 18 | 12 | 7 | 1 | |
| -----------------------------------------------------------ACCATGTGTTCTCTGTCCA------------- | 19 | 17 | 1 | - | |
| -----------------------------------------------------------ACCATGTGTTCTCTGTCCACAGT--------- | 23 | 7 | 9 | - | |
| -----------------------------------------------------------ACCATGTGTTCTCTGTCCACAG---------- | 22 | 1 | 5 | - | |
| rat | tctgagcatgtctggggcagggtggatggaggccccatgctgccaccggtgcggggatgACCATGTGTTCTCTGTCCACAGTgcttacgac | ||||
| ******************************************************************************************* | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>> | ENSRNOT00000036061 ENSRNOG00000023993 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>> | ENSRNOT00000052345 ENSRNOG00000023993 | ||||
| rat | ((((((((...(((((((((((((.((((...((((..((((....))))..))))....)))).))..)))))))).))))))))).)). | 0.970 -37.60 | |||
| rat | chromosome:9:92292772:92292862:-1 | Same_strand|Boundary_coding|ENSRNOT00000052345|ENSRNOG00000023993 ## ENSRNOG00000023993|protein_coding|| |
novel_lenNOK_cloningHIGH_mirtron_randfoldOK_bulgeHIGH (1 loci)
block1517078 [novel_lenNOK_cloningHIGH_mirtron_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.55/0.61 | 18/22/0.62 | 0.0 | 0.7 | 38 | 0 | 10 | 0 | 24 | 8 | 3arm | 1 | 0 | 0.28 | 4 | 74 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -------------------------------------------------------------GACCCUC------------------------------------- | 68 | novel | |||||||||
| seed | ---------------------------------------------------------------CCCUCCU----------------------------------- | 4 | novel | |||||||||
| seed | --------------------------------------------------------------ACCCUCC------------------------------------ | 2 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------TGACCCTCCTTTGCTCCTCAG------------------------ | 21 | - | 13 | 1 | 7 | 4 | 3 | 1 | 3 | 1 | 3 | |
| ------------------------------------------------------------TGACCCTCCTTTGCTCCTC-------------------------- | 19 | 1 | 5 | - | 3 | - | - | - | 3 | - | 1 | |
| ------------------------------------------------------------TGACCCTCCTTTGCTCCTCA------------------------- | 20 | - | 5 | - | 1 | - | - | - | - | - | 3 | |
| ------------------------------------------------------------TGACCCTCCTTTGCTCCT--------------------------- | 18 | 1 | 4 | - | 3 | - | 1 | - | - | - | - | |
| --------------------------------------------------------------ACCCTCCTTTGCTCCTCAG------------------------ | 19 | 1 | 1 | - | 2 | - | - | - | - | - | - | |
| -------------------------------------------------------------GACCCTCCTTTGCTCCTC-------------------------- | 18 | - | - | - | - | - | - | - | - | 2 | - | |
| ------------------------------------------------------------TGACCCTCCTTTGCTCCTCAGG----------------------- | 22 | - | - | 1 | - | - | - | - | - | - | - | |
| rat | ggagtgagttggtttggggaaggggagtgggggtgcatggagagggacaggaccctatcgTGACCCTCCTTTGCTCCTCAGgtcttcccaaagctgactcgggcc | |||||||||||
| ********************************************************************************************************* | ||||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000017319 ENSRNOG00000012722 RGD1310660 | |||||||||||
| rat | ((..(((((..((((.((((((((((((((((((.(((((..((((......)))).)))))))))))....)))))).....)))))).))))..)))))..)) | 1.000 -52.30 | ||||||||||
| rat | chromosome:3:170329895:170329999:1 | Same_strand|Boundary_coding|ENSRNOT00000017319|ENSRNOG00000012722 ## ENSRNOG00000012722|protein_coding|RGD1310660|UPF0362 protein C20orf149 homolog. [Source:UniProtKB/Swiss-Prot;Acc:Q5PR01] |
novel_lenNOK_cloningHIGH_multiarm_5varHIGH_loopOverlap_bulgeHIGH (1 loci)
block1060991 [novel_lenNOK_cloningHIGH_multiarm_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.247 | no | no | 0.35/0.47 | 18/26/0.60 | 0.0 2.3 | 0.0 1.0 | 1 35 | 0 0 | 1 4 | 0 0 | 41 30 | -6 -19 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.26 0.27 | 5 2 | 63 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------GCUAAAG-------------------------------------------- | 20 | novel | |||
| seed | ----------------------------------------------------GCUGAUU--------------------------------------------------- | 18 | novel | |||
| seed | -------------------------------------------------------GAUUGCU------------------------------------------------ | 15 | novel | |||
| seed | ----------------------------------------------------------UGCUAAA--------------------------------------------- | 7 | novel | |||
| seed | --------------------------------------------------------------AAAGGUC----------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------CAAGGCU------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------UUUGCUG------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S2 | T5S1 | |||
| ----------------------------------------------------------TGCTAAAGGTCTTGATGGAGAC------------------------------ | 22 | 1 | 1 | - | 14 | |
| ------------------------------------------------------TGATTGCTAAAGGTCTTGATGGAGAC------------------------------ | 26 | - | - | - | 10 | |
| ---------------------------------------------------------TTGCTAAAGGTCTTGATGGAGAC------------------------------ | 23 | - | - | - | 6 | |
| ---------------------------------------------------TGCTGATTGCTAAAGGTCTTGA------------------------------------- | 22 | - | 1 | - | 5 | |
| ---------------------------------------------------TGCTGATTGCTAAAGGTCT---------------------------------------- | 19 | 2 | 1 | - | 1 | |
| ------------------------------------------------------TGATTGCTAAAGGTCTTGA------------------------------------- | 19 | 1 | - | - | 3 | |
| ---------------------------------------------------TGCTGATTGCTAAAGGTCTT--------------------------------------- | 20 | - | - | - | 4 | |
| ---------------------------------------------------TGCTGATTGCTAAAGGTC----------------------------------------- | 18 | - | - | - | 2 | |
| ----------------------------------------------------------TGCTAAAGGTCTTGATGGAGA------------------------------- | 21 | - | - | - | 2 | |
| ---------------------------------------------------TGCTGATTGCTAAAGGTCTTG-------------------------------------- | 21 | - | - | - | 2 | |
| ----------------------------------------------------------TGCTAAAGGTCTTGATGGA--------------------------------- | 19 | - | - | - | 2 | |
| -------------------------------------------------------------TAAAGGTCTTGATGGAGAC------------------------------ | 19 | - | - | - | 1 | |
| ------------------------------------------------TTTTGCTGATTGCTAAAGGT------------------------------------------ | 20 | - | - | - | 1 | |
| -----------------------------------------GCAAGGCTTTTGCTGATTG-------------------------------------------------- | 19 | - | - | - | 1 | |
| ---------------------------------------------------------TTGCTAAAGGTCTTGATGGAG-------------------------------- | 21 | - | - | - | 1 | |
| ------------------------------------------------------TGATTGCTAAAGGTCTTG-------------------------------------- | 18 | - | - | 1 | - | |
| rat | gatactgtctggtagcatagcccagtcacaaaaatcgcctggcaaggctttTGCTGATTGCTAAAGGTCTTGATGGAGACggaagagggcagagcctcggacctagcgtc | |||||
| ************************************************************************************************************** | ||||||
| rat | ((..((((((((..((...((((..((.......((.((...((((((((((((.....)).))))))))))..)).))..))...))))...)).))))))..))..)) | 0.500 -32.40 | ||||
| rat | chromosome:20:5524011:5524120:-1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_bulgeHIGH (1 loci)
sblock11649 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.055 | no | no | 0.42/0.53 | 18/25/0.61 | 1.8 0.0 | 0.2 0.0 | 27 5 | 0 0 | 6 2 | 0 0 | 6 12 | 5 -1 | 5arm 3arm | 1 1 | nd nd | 0.46 0.26 | 5 4 | 57 | 7 | -8 | -9 |
| reads | miRBase family seed | ||||||||
| seed | -------UUGAAUU-------------------------------------------------------- | 13 | novel | ||||||
| seed | --------UGAAUUG------------------------------------------------------- | 10 | novel | ||||||
| seed | -------------UGCAGAG-------------------------------------------------- | 9 | novel | ||||||
| seed | ---------GAAUUGC------------------------------------------------------ | 7 | novel | ||||||
| seed | -GCGUGUU-------------------------------------------------------------- | 7 | novel | ||||||
| seed | ----------------------------------------GUGACUG----------------------- | 6 | miR-134 | ||||||
| seed | -----GUUUGAA---------------------------------------------------------- | 2 | novel | ||||||
| seed | --------------GCAGAGC------------------------------------------------- | 1 | novel | ||||||
| seed | ----------AAUUGCA----------------------------------------------------- | 1 | novel | ||||||
| seed | ------------------------------------------GACUGUG--------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S1 | T5S1 | |||
| ------TTTGAATTGCAGAGCCACAACCCA---------------------------------------- | 24 | 2 | 1 | - | - | - | - | 9 | |
| -------TTGAATTGCAGAGCCACAACCCA---------------------------------------- | 23 | 1 | - | - | 1 | - | - | 8 | |
| ------------TTGCAGAGCCACAACCCAT--------------------------------------- | 19 | 1 | - | - | - | 1 | - | 5 | |
| ---------------------------------------TGTGACTGTGGAAAGGGTG------------ | 19 | - | - | 1 | - | - | - | 5 | |
| --------TGAATTGCAGAGCCACAACCCA---------------------------------------- | 22 | - | - | - | - | - | 1 | 5 | |
| TGCGTGTTTGAATTGCAGAGCC------------------------------------------------ | 22 | 1 | - | - | - | - | - | 1 | |
| TGCGTGTTTGAATTGCAGAG-------------------------------------------------- | 20 | - | - | - | - | - | - | 2 | |
| ------------TTGCAGAGCCACAACCCATATC------------------------------------ | 22 | 2 | - | - | - | - | - | - | |
| ----TGTTTGAATTGCAGAGCCACAACCC----------------------------------------- | 25 | - | - | - | - | - | - | 1 | |
| -----------------------------------------TGACTGTGGAAAGGGTGCT---------- | 19 | - | - | - | - | - | - | 1 | |
| TGCGTGTTTGAATTGCAGAGCCAC---------------------------------------------- | 24 | - | - | - | - | - | - | 1 | |
| ------TTTGAATTGCAGAGCCAC---------------------------------------------- | 18 | - | 1 | - | - | - | - | - | |
| ---------GAATTGCAGAGCCACAACC------------------------------------------ | 19 | - | - | - | - | - | - | 1 | |
| ----TGTTTGAATTGCAGAGCCA----------------------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| -------------TGCAGAGCCACAACCCATA-------------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| --------TGAATTGCAGAGCCACAAC------------------------------------------- | 19 | - | 1 | - | - | - | - | - | |
| TGCGTGTTTGAATTGCAGAGCCACA--------------------------------------------- | 25 | - | - | - | - | - | - | 1 | |
| TGCGTGTTTGAATTGCAGA--------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | |
| rat | tgcgtgTTTGAATTGCAGAGCCACAACCCATatcacagaTGTGACTGTGGAAAGGGTGctatcagactgc | ||||||||
| ********************************************************************** | |||||||||
| rat | .(((.((((((...((...(((.....(((((((((....)))).)))))....)))))..))))))))) | 0.990 -21.10 | |||||||
| rat | chromosome:8:57725087:57725156:-1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap_mirtron_randfoldOK (1 loci)
sblock12750 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.61/0.81 | 18/23/0.65 | 1.2 1.2 | 1.6 2.7 | 22 29 | 0 0 | 6 8 | 0 0 | 24 33 | -1 2 | 5arm_loop 3arm | 1 1 | 18 0 | 0.09 0.14 | 1 2 | 51 | 9 | 1 | -1 |
| reads | miRBase family seed | ||||||||||
| seed | ------------------------------------------------------------GCCUGAU------------------------------------------------- | 15 | novel | ||||||||
| seed | ---------------------------GUGGGGC---------------------------------------------------------------------------------- | 10 | novel | ||||||||
| seed | --------------------------------------------------------------CUGAUGU----------------------------------------------- | 10 | novel | ||||||||
| seed | --------------------------CGUGGGG----------------------------------------------------------------------------------- | 5 | novel | ||||||||
| seed | -----------------------------GGGGCGG-------------------------------------------------------------------------------- | 5 | novel | ||||||||
| seed | ---------------------------------------------------------------UGAUGUU---------------------------------------------- | 4 | novel | ||||||||
| seed | -------------------------ACGUGGG------------------------------------------------------------------------------------ | 2 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------AGCCTGATGTTCCCCGTCC-------------------------------------- | 19 | 1 | 2 | 1 | - | - | 1 | - | - | - | |
| --------------------------CGTGGGGCGGTGGACCCAGGC--------------------------------------------------------------------- | 21 | 1 | - | 1 | 2 | 1 | - | - | - | - | |
| -------------------------------------------------------------CCTGATGTTCCCCGTCCCGCAG--------------------------------- | 22 | 3 | - | - | - | - | 1 | - | - | - | |
| -----------------------------------------------------------AGCCTGATGTTCCCCGTCCC------------------------------------- | 20 | 2 | 1 | - | - | - | - | - | - | - | |
| -------------------------------------------------------------CCTGATGTTCCCCGTCCCGCA---------------------------------- | 21 | 1 | 1 | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------AGCCTGATGTTCCCCGTCCCGCA---------------------------------- | 23 | - | 1 | - | - | 1 | 1 | - | - | - | |
| --------------------------------------------------------------CTGATGTTCCCCGTCCCGC----------------------------------- | 19 | 3 | - | - | - | - | - | - | - | - | |
| -------------------------ACGTGGGGCGGTGGACCCAGGC--------------------------------------------------------------------- | 22 | 1 | - | - | 1 | - | - | - | - | - | |
| ----------------------------TGGGGCGGTGGACCCAGGC--------------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | - | 1 | - | |
| --------------------------CGTGGGGCGGTGGACCCAG----------------------------------------------------------------------- | 19 | 1 | - | 1 | - | - | - | - | - | - | |
| -------------------------ACGTGGGGCGGTGGACCCAGGCT-------------------------------------------------------------------- | 23 | 2 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------AGCCTGATGTTCCCCGTCCCG------------------------------------ | 21 | - | 1 | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------AGCCTGATGTTCCCCGTC--------------------------------------- | 18 | - | 2 | - | - | - | - | - | - | - | |
| --------------------------CGTGGGGCGGTGGACCCA------------------------------------------------------------------------ | 18 | - | - | - | - | 1 | - | - | 1 | - | |
| ------------------------GACGTGGGGCGGTGGACCCAG----------------------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------TGGGGCGGTGGACCCAGGCTT------------------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | - | - | |
| -------------------------------------------------------------CCTGATGTTCCCCGTCCC------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | - | |
| -------------------------------------------------------------CCTGATGTTCCCCGTCCCG------------------------------------ | 19 | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------CTGATGTTCCCCGTCCCGCA---------------------------------- | 20 | - | - | 1 | - | - | - | - | - | - | |
| -------------------------ACGTGGGGCGGTGGACCCAG----------------------------------------------------------------------- | 20 | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------TGGGGCGGTGGACCCAGGCT-------------------------------------------------------------------- | 20 | - | - | 1 | - | - | - | - | - | - | |
| ------------------------GACGTGGGGCGGTGGACCCAGG---------------------------------------------------------------------- | 22 | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------TGGGGCGGTGGACCCAGGCTTCT----------------------------------------------------------------- | 23 | - | 1 | - | - | - | - | - | - | - | |
| --------------------------CGTGGGGCGGTGGACCCAGGCTT------------------------------------------------------------------- | 23 | - | - | - | 1 | - | - | - | - | - | |
| -------------------------------------------------------------CCTGATGTTCCCCGTCCCGC----------------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | |
| rat | cagttcggtgggtgacggcaggccGACGTGGGGCGGTGGACCCAGGCTTCTggagctgaAGCCTGATGTTCCCCGTCCCGCAGcggccttgatcgtgcgcgaccagacagagctgc | ||||||||||
| ******************************************************************************************************************** | |||||||||||
| >>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000056329 ENSRNOG00000037263 Irak1_predicted | ||||||||||
| >>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000056328 ENSRNOG00000037263 Irak1_predicted | ||||||||||
| rat | ((((((..(((((((((((((((((..(((((((((.((((.((((((((.......))))))))..)))).)))))))))..))))).)).)))).)))..)))....)))))). | 1.000 -64.60 | |||||||||
| rat | chromosome:X:159968755:159968870:-1 | Same_strand|Intronic_coding|ENSRNOT00000056328|ENSRNOG00000037263 ## ENSRNOG00000037263|protein_coding|Irak1_predicted| |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_mirtron (1 loci)
sblock3570 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.022 | no | no | 0.58/0.79 | 18/23/0.61 | 0.0 1.1 | 1.2 1.1 | 15 46 | 0 0 | 5 9 | 0 0 | 26 28 | 4 3 | 5arm 3arm | 1 1 | 42 0 | 0.16 0.29 | 2 5 | 116 | 9 | 5 | 1 |
| reads | miRBase family seed | ||||||||||
| seed | ----------------------------------------------------------------------CCCAGCC---------------------------------------- | 65 | novel | ||||||||
| seed | ---------------------------GGGGGGG----------------------------------------------------------------------------------- | 17 | novel | ||||||||
| seed | -----------------------------------------------------------------CCUGACC--------------------------------------------- | 16 | novel | ||||||||
| seed | --------------------------------------------------------------------GACCCAG------------------------------------------ | 7 | novel | ||||||||
| seed | ------------------------------------------------------------------CUGACCC-------------------------------------------- | 7 | novel | ||||||||
| seed | -------------------------------------------------------------------UGACCCA------------------------------------------- | 2 | novel | ||||||||
| seed | --------------------------UGGGGGG------------------------------------------------------------------------------------ | 1 | novel | ||||||||
| seed | ---------------------------------------------------------------------ACCCAGC----------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| ---------------------------------------------------------------------ACCCAGCCCCTTCCCCCCAG---------------------------- | 20 | 27 | 3 | 1 | 1 | 2 | - | 5 | - | 1 | |
| ---------------------------------------------------------------------ACCCAGCCCCTTCCCCCCA----------------------------- | 19 | 9 | 5 | - | - | 2 | - | 3 | - | - | |
| ----------------------------------------------------------------TCCTGACCCAGCCCCTTCCCC-------------------------------- | 21 | 10 | - | - | - | - | - | - | - | - | |
| --------------------------TGGGGGGGTATTGGGTCAA------------------------------------------------------------------------ | 19 | 2 | 1 | - | - | 4 | - | 1 | - | - | |
| ---------------------------------------------------------------------ACCCAGCCCCTTCCCCCC------------------------------ | 18 | 2 | - | 1 | - | - | 1 | 2 | - | - | |
| --------------------------TGGGGGGGTATTGGGTCA------------------------------------------------------------------------- | 18 | 4 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------CCTGACCCAGCCCCTTCCCC-------------------------------- | 20 | 2 | - | 1 | - | - | - | - | - | 1 | |
| ----------------------------------------------------------------TCCTGACCCAGCCCCTTC----------------------------------- | 18 | 2 | - | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------------TCCTGACCCAGCCCCTTCCCCC------------------------------- | 22 | 1 | - | - | - | - | - | - | - | 2 | |
| --------------------------TGGGGGGGTATTGGGTCAAG----------------------------------------------------------------------- | 20 | 3 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------TGACCCAGCCCCTTCCCCC------------------------------- | 19 | - | 2 | - | - | - | - | 1 | - | - | |
| --------------------------TGGGGGGGTATTGGGTCAAGC---------------------------------------------------------------------- | 21 | 2 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------TGACCCAGCCCCTTCCCCCCAG---------------------------- | 22 | 2 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------CCTGACCCAGCCCCTTCCCCCCA----------------------------- | 23 | - | 1 | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------TGACCCAGCCCCTTCCCCCC------------------------------ | 20 | 2 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------CCTGACCCAGCCCCTTCCCCCC------------------------------ | 22 | - | - | - | - | - | 1 | - | - | - | |
| -------------------------GTGGGGGGGTATTGGGTCAA------------------------------------------------------------------------ | 20 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------CTGACCCAGCCCCTTCCCCCCAG---------------------------- | 23 | - | 1 | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------CTGACCCAGCCCCTTCCC--------------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------GACCCAGCCCCTTCCCCCC------------------------------ | 19 | 1 | - | - | - | - | - | - | - | - | |
| rat | gctttctagatcgggggggggtggggtgggggggtattgggtcaagctgagtttacctgccctcTCCTGACCCAGCCCCTTCCCCCCAGcctcagtccctatggccatgatgagggc | ||||||||||
| ********************************************************************************************************************* | |||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000047911 ENSRNOG00000029260 NP_001100609.1 | ||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000048528 ENSRNOG00000029260 NP_001100609.1 | ||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000048544 ENSRNOG00000029260 NP_001100609.1 | ||||||||||
| rat | ((((((...(((((((((((.(((((((((((((..(((((((.((..(((..........)))..))))))))).....)))))))).))))).)))))....)).)))))))))) | 0.660 -54.40 | |||||||||
| rat | chromosome:12:33591247:33591363:1 | Same_strand|Intronic_coding|ENSRNOT00000048528|ENSRNOG00000029260 ## ENSRNOG00000029260|protein_coding|NP_001100609.1|phosphatidylinositol transfer protein, membrane-associated 2 [Source:RefSeq_peptide;Acc:NP_001100609] ## {Repeats: dust 33591259 33591268 0 class=dust} |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_mirtron_bulgeHIGH (1 loci)
sblock1005 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.171 | no | no | 0.42/0.56 | 18/24/0.67 | 0.9 0.4 | 2.7 0.0 | 17 18 | 0 0 | 8 10 | 0 0 | 40 28 | -10 6 | 5arm_loop_3arm 3arm | 1 1 | 22 0 | 0.30 0.50 | 5 5 | 75 | 10 | 8 | 0 |
| reads | miRBase family seed | |||||||||||
| seed | ---------------------------------------------------------------------AACCUUA----------------------------------------- | 19 | novel | |||||||||
| seed | ----------------------------------------------------------------------ACCUUAC---------------------------------------- | 14 | novel | |||||||||
| seed | -----------------------------------------AGGUGGU--------------------------------------------------------------------- | 13 | novel | |||||||||
| seed | --------------------------------------------------------------------CAACCUU------------------------------------------ | 8 | novel | |||||||||
| seed | -----------------------------------------------------------------------CCUUACG--------------------------------------- | 7 | novel | |||||||||
| seed | ---------------------------------------------GGUAGAU----------------------------------------------------------------- | 4 | novel | |||||||||
| seed | -------------------------------------------------------------------UCAACCU------------------------------------------- | 3 | novel | |||||||||
| seed | -----------------------------------------------------------------GCUCAAC--------------------------------------------- | 2 | novel | |||||||||
| seed | ------------------------------------------------------------GACAUGC-------------------------------------------------- | 1 | novel | |||||||||
| seed | ----------------------------------------------------------------UGCUCAA---------------------------------------------- | 1 | novel | |||||||||
| seed | --------------------------------------------------------------CAUGCUC------------------------------------------------ | 1 | novel | |||||||||
| seed | -------------------------------------------------------------ACAUGCU------------------------------------------------- | 1 | novel | |||||||||
| seed | ------------------------------------------------------------------------CUUACGU-------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------CAACCTTACGTCTTCCTCCAG---------------------------- | 21 | 1 | - | - | - | - | 1 | - | 1 | 4 | 7 | |
| ---------------------------------------------------------------------AACCTTACGTCTTCCTCCAG---------------------------- | 20 | 4 | 1 | - | - | - | 1 | 3 | - | 1 | 2 | |
| -------------------------------------------------------------------TCAACCTTACGTCTTCCTCCAG---------------------------- | 22 | - | - | - | - | 2 | 1 | - | - | 2 | 2 | |
| ----------------------------------------AAGGTGGTAGATGTATGG----------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | 2 | 2 | |
| ----------------------------------------------------------------------ACCTTACGTCTTCCTCCAG---------------------------- | 19 | 1 | - | 1 | - | 1 | 2 | - | - | - | - | |
| --------------------------------------------------------------------CAACCTTACGTCTTCCTCCA----------------------------- | 20 | - | - | - | - | 2 | - | - | - | - | 1 | |
| ----------------------------------------AAGGTGGTAGATGTATGGT---------------------------------------------------------- | 19 | 1 | - | - | - | - | 1 | - | - | - | 1 | |
| --------------------------------------------------------------------CAACCTTACGTCTTCCTCC------------------------------ | 19 | - | 1 | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------TGGTAGATGTATGGTGGACATG--------------------------------------------------- | 22 | - | - | - | - | - | - | - | 2 | - | - | |
| ------------------------------------------------------------------CTCAACCTTACGTCTTCCTCCAG---------------------------- | 23 | - | - | - | - | 1 | - | - | - | - | 1 | |
| ----------------------------------------AAGGTGGTAGATGTATGGTG--------------------------------------------------------- | 20 | - | - | 1 | - | - | - | - | - | 1 | - | |
| ----------------------------------------AAGGTGGTAGATGTATGGTGG-------------------------------------------------------- | 21 | - | 1 | - | - | - | - | - | 1 | - | - | |
| ----------------------------------------------------------------TGCTCAACCTTACGTCTTC---------------------------------- | 19 | - | - | - | - | - | - | - | - | 2 | - | |
| ---------------------------------------------------------------------AACCTTACGTCTTCCTCCA----------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------------------------ACCTTACGTCTTCCTCCA----------------------------- | 18 | - | - | - | 1 | - | 1 | - | - | - | - | |
| ----------------------------------------AAGGTGGTAGATGTATGGTGGA------------------------------------------------------- | 22 | - | - | - | - | - | - | - | 1 | - | - | |
| -----------------------------------------------------------GGACATGCTCAACCTTACGTCT------------------------------------ | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| -------------------------------------------------------------ACATGCTCAACCTTACGTCTTCC--------------------------------- | 23 | - | - | - | - | 1 | - | - | - | - | - | |
| ------------------------------------------------------------GACATGCTCAACCTTACGTCTTCC--------------------------------- | 24 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------TCAACCTTACGTCTTCCTC------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------CTCAACCTTACGTCTTCC--------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------ATGCTCAACCTTACGTCTTCCTC------------------------------- | 23 | - | - | - | - | - | 1 | - | - | - | - | |
| -----------------------------------------------------------------------CCTTACGTCTTCCTCCAG---------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------------TGGTAGATGTATGGTGGA------------------------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------------------TGGTAGATGTATGGTGGACATGC-------------------------------------------------- | 23 | - | - | - | - | - | - | - | 1 | - | - | |
| rat | ggagtgtaagtagcatgctggtgggtttaagggaagggggaaggtggtagatgtatggtggacatgctCAACCTTACGTCTTCCTCCAGgtgtcgcaggcaggactcctgacatcct | |||||||||||
| ********************************************************************************************************************* | ||||||||||||
| >>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000025196 ENSRNOG00000018487 Slc3a2 | |||||||||||
| rat | (((.(((.((.((..((((.((((.......((.(((..((....(((.((.(((((.....))))))).))).....))..))))).....)))).))))...)).)).)))))). | 0.870 -37.20 | ||||||||||
| rat | chromosome:1:211377403:211377519:-1 | Same_strand|Intronic_coding|ENSRNOT00000025196|ENSRNOG00000018487 ## ENSRNOG00000018487|protein_coding|Slc3a2|4F2 cell-surface antigen heavy chain (4F2hc). [Source:UniProtKB/Swiss-Prot;Acc:Q794F9] |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_randfoldOK (1 loci)
sblock6763 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.35/0.61 | 18/25/0.43 | 0.0 0.0 0.0 | 1.3 0.0 0.0 | 3 19 1 | 0 0 0 | 1 8 1 | 0 0 0 | 8 24 2 | 4 -7 8 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.50 0.63 0.28 | 10 8 3 | 60 | 8 | 0 | 0 |
| reads | miRBase family seed | |||||||||
| seed | -------------------------GCAUACC------------------------------------------ | 28 | novel | |||||||
| seed | ---------------------------------GACUUCA---------------------------------- | 9 | novel | |||||||
| seed | -----------------------CUGCAUA-------------------------------------------- | 5 | novel | |||||||
| seed | -----------------------------ACCUGAC-------------------------------------- | 4 | novel | |||||||
| seed | ----------------------------UACCUGA--------------------------------------- | 3 | novel | |||||||
| seed | ---------GGCUGCC---------------------------------------------------------- | 3 | novel | |||||||
| seed | ------------------------------------UUCAUGA------------------------------- | 2 | novel | |||||||
| seed | -------------------CACUCUG------------------------------------------------ | 1 | novel | |||||||
| seed | -------------------------------------UCAUGAU------------------------------ | 1 | miR-433 | |||||||
| seed | -------------------------------------------------------GCCUGCA------------ | 1 | novel | |||||||
| seed | --------------------------------------CAUGAUU----------------------------- | 1 | novel | |||||||
| seed | ----------------------------------ACUUCAU--------------------------------- | 1 | novel | |||||||
| seed | --------------------------------UGACUUC----------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------TGCATACCTGACTTCATGA------------------------------- | 19 | 2 | - | 1 | 1 | 1 | 2 | 19 | 1 | |
| --------------------------------TGACTTCATGATTTGTCCTCA--------------------- | 21 | 1 | - | - | - | - | 1 | 5 | - | |
| ----------------------TCTGCATACCTGACTTCATGA------------------------------- | 21 | - | 1 | - | - | - | - | 4 | - | |
| ----------------------------TACCTGACTTCATGATTTGTC------------------------- | 21 | - | - | - | - | - | - | 4 | - | |
| -----------------------------------CTTCATGATTTGTCCTCAA-------------------- | 19 | - | - | - | - | - | - | 2 | - | |
| --------TGGCTGCCTCTCACTCTGCA---------------------------------------------- | 20 | - | - | - | - | - | - | 2 | - | |
| ---------------------------ATACCTGACTTCATGATTTGTC------------------------- | 22 | - | - | - | - | - | - | 2 | - | |
| -------------------------------CTGACTTCATGATTTGTCCTCA--------------------- | 22 | - | - | - | - | - | - | 1 | - | |
| ------------------TCACTCTGCATACCTGACTTCATGA------------------------------- | 25 | 1 | - | - | - | - | - | - | - | |
| --------------------------------TGACTTCATGATTTGTCCT----------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| --------------------------------TGACTTCATGATTTGTCCTC---------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------TGCCTGCAGTCTTTGGGC-- | 18 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------TTCATGATTTGTCCTCAATG------------------ | 20 | - | - | - | - | - | - | 1 | - | |
| ---------------------------ATACCTGACTTCATGATTTGTCCT----------------------- | 24 | - | - | - | - | - | - | 1 | - | |
| --------TGGCTGCCTCTCACTCTGCATACC------------------------------------------ | 24 | - | - | - | - | - | - | 1 | - | |
| ------------------------TGCATACCTGACTTCATGATT----------------------------- | 21 | - | 1 | - | - | - | - | - | - | |
| -------------------------------------TCATGATTTGTCCTCAATG------------------ | 19 | - | - | - | - | - | - | - | 1 | |
| ---------------------------------GACTTCATGATTTGTCCTCAATGCC---------------- | 25 | - | - | - | - | - | - | 1 | - | |
| rat | tgcccttctggctgcctctcactcTGCATACCTGACTTCATGAtttgtcctcaatgcctgcagtctttgggcat | |||||||||
| ************************************************************************** | ||||||||||
| rat | (((((....((((((..........((((....(((..........)))....))))..))))))...))))). | 0.970 -20.50 | ||||||||
| rat | chromosome:20:5524182:5524255:-1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_mirtron (1 loci)
sblock2717 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.087 | no | no | 0.61/0.68 | 18/23/0.63 | 0.0 0.1 | 0.5 1.8 | 11 16 | 0 0 | 9 3 | 0 0 | 24 23 | 14 7 | 5arm 3arm | 1 1 | 48 1 | 0.18 0.16 | 1 1 | 59 | 10 | 0 | 0 |
| reads | miRBase family seed | |||||||||||
| seed | -------------------------CUGGAGC------------------------------------------------------------------------------------ | 28 | novel | |||||||||
| seed | ------------------------------------------------------------------------CCCCUGG------------------------------------- | 21 | miR-331 | |||||||||
| seed | --------------------------UGGAGCC----------------------------------------------------------------------------------- | 7 | novel | |||||||||
| seed | -------------------------------------------------------------------------CCCUGGG------------------------------------ | 2 | novel | |||||||||
| seed | ---------------------------GGAGCCC---------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------TCTGGAGCCCATGCCTTGGGGA---------------------------------------------------------------------- | 22 | 1 | 8 | 1 | 1 | - | 1 | 2 | 1 | - | 1 | |
| -----------------------------------------------------------------------TCCCCTGGGTCTGTGCTC--------------------------- | 18 | 6 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------TCCCCTGGGTCTGTGCTCTGC------------------------ | 21 | 1 | 4 | - | - | - | - | - | - | 2 | - | |
| ------------------------TCTGGAGCCCATGCCTTG-------------------------------------------------------------------------- | 18 | - | 1 | - | - | 1 | - | - | 2 | - | - | |
| -----------------------------------------------------------------------TCCCCTGGGTCTGTGCTCT-------------------------- | 19 | 1 | 1 | - | - | - | - | - | - | 2 | - | |
| -------------------------CTGGAGCCCATGCCTTGG------------------------------------------------------------------------- | 18 | 1 | 2 | - | - | - | - | - | - | - | - | |
| ------------------------TCTGGAGCCCATGCCTTGGG------------------------------------------------------------------------ | 20 | - | 3 | - | - | - | - | - | - | - | - | |
| ------------------------TCTGGAGCCCATGCCTTGGGG----------------------------------------------------------------------- | 21 | - | - | - | - | - | - | 2 | - | - | - | |
| -------------------------CTGGAGCCCATGCCTTGGG------------------------------------------------------------------------ | 19 | - | - | - | - | - | 1 | - | 1 | - | - | |
| ------------------------TCTGGAGCCCATGCCTTGG------------------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | 1 | - | - | |
| -----------------------------------------------------------------------TCCCCTGGGTCTGTGCTCTGCA----------------------- | 22 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------------CCCCTGGGTCTGTGCTCTGCA----------------------- | 21 | 2 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------TCCCCTGGGTCTGTGCTCTG------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| ------------------------TCTGGAGCCCATGCCTTGGGGAT--------------------------------------------------------------------- | 23 | - | - | - | - | - | - | - | - | - | 1 | |
| -------------------------CTGGAGCCCATGCCTTGGGGAT--------------------------------------------------------------------- | 22 | - | 1 | - | - | - | - | - | - | - | - | |
| -------------------------CTGGAGCCCATGCCTTGGGGATA-------------------------------------------------------------------- | 23 | - | - | - | - | - | - | - | 1 | - | - | |
| --------------------------TGGAGCCCATGCCTTGGGGA---------------------------------------------------------------------- | 20 | - | - | 1 | - | - | - | - | - | - | - | |
| rat | cctgggcagctgtttctggggcatTCTGGAGCCCATGCCTTGGGGAtaagctgttcttggttttcctgatgTCCCCTGGGTCTGTGCTCTGCagtggagaagtggcaggctctggc | |||||||||||
| ******************************************************************************************************************** | ||||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000043448 ENSRNOG00000033101 LOC360570 | |||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000056257 ENSRNOG00000033101 LOC360570 | |||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000042166 ENSRNOG00000033101 LOC360570 | |||||||||||
| rat | ((.((((.((..(((((....((((.((((((.((.((((.(((((((......((..((....)).))))))))).)))).)).)))))).)))).)))))..))..)))).)). | 0.850 -45.70 | ||||||||||
| rat | chromosome:10:63859957:63860072:1 | Same_strand|Boundary_non-coding|ENSRNOT00000056256|ENSRNOG00000033101 ## Same_strand|Intronic_coding|ENSRNOT00000043448|ENSRNOG00000033101 ## ENSRNOG00000033101|protein_coding|LOC360570|LOC360570 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q3B8R3] |
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