other hairpins
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_mirtron (1 loci)
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem (1 loci)
sblock3581 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.124 | no | no | 0.55/0.61 | 18/20/0.06 | 0.0 0.0 | 0.0 0.0 | 1 38 | 0 0 | 1 8 | 0 0 | 18 4 | -4 1 | 5arm_loop 3arm | 1 1 | nd nd | 0.56 0.17 | 5 2 | 88 | 8 | 5 | 9 |
| reads | miRBase family seed | |||||||||
| seed | ---------------------------------------------UGGCCCU-------------- | 87 | miR-328 | |||||||
| seed | -------------------AGCGUUU---------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------CTGGCCCTTCTCACCCTT---- | 18 | 38 | 8 | 1 | 7 | 8 | 10 | 1 | 2 | |
| --------------------------------------------CTGGCCCTTCTCACCCTTA--- | 19 | 6 | - | - | - | - | 1 | - | - | |
| --------------------------------------------CTGGCCCTTCTCACCCTTAA-- | 20 | 1 | 1 | - | 1 | - | 2 | - | - | |
| ------------------AAGCGTTTGCCAGGAGCC------------------------------ | 18 | - | - | - | - | - | - | - | 1 | |
| rat | ccgcttggggttgccgagaagcgtttgccaggagccccagaaacCTGGCCCTTCTCACCCTTaacg | |||||||||
| ****************************************************************** | ||||||||||
| rat | .((...(((((....((((((.....((((((...........)))))).)))))))))))...)) | 1.000 -22.10 | ||||||||
| rat | chromosome:12:35787192:35787257:1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap (1 loci)
sblock11755 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.775 | no | no | 0.35/0.58 | 18/26/0.62 | 2.0 0.0 2.0 1.7 | 4.5 0.5 1.0 1.7 | 17 6 2 50 | 0 0 0 0 | 1 1 2 7 | 0 0 0 0 | 0 17 17 3 | -1 -5 -22 4 | 5arm_loop 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.25 0.47 0.45 0.26 | 3 4 3 2 | 105 | 7 | 10 | 8 |
| reads | miRBase family seed | ||||||||
| seed | ----------------------------------------------CAAUGUC--------------- | 27 | novel | ||||||
| seed | ---------------------------------------------UCAAUGU---------------- | 17 | novel | ||||||
| seed | ----------------------------------------CAGAGUC--------------------- | 15 | novel | ||||||
| seed | --------GUGCAUC----------------------------------------------------- | 11 | novel | ||||||
| seed | ------------------UGGUUUG------------------------------------------- | 6 | novel | ||||||
| seed | --------------------------------------------------GUCGUCA----------- | 5 | novel | ||||||
| seed | -------------------------------------------AGUCAAU------------------ | 5 | novel | ||||||
| seed | ----------GCAUCUA--------------------------------------------------- | 4 | novel | ||||||
| seed | -UGCAUUU------------------------------------------------------------ | 4 | novel | ||||||
| seed | -----------------------------------------AGAGUCA-------------------- | 3 | novel | ||||||
| seed | ------------------------------------------GAGUCAA------------------- | 2 | novel | ||||||
| seed | --------------------------------ACCGGCC----------------------------- | 1 | novel | ||||||
| seed | ------UUGUGCA------------------------------------------------------- | 1 | novel | ||||||
| seed | ----------------------------CCCUACC--------------------------------- | 1 | novel | ||||||
| seed | --GCAUUUG----------------------------------------------------------- | 1 | novel | ||||||
| seed | -------------------------------------CCUCAGA------------------------ | 1 | novel | ||||||
| seed | --------------CUAUUGG----------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T4S2 | T5S1 | |||
| ---------------------------------------------TCAATGTCGTCAAATTCCAG--- | 20 | 2 | - | 1 | - | 1 | - | 23 | |
| --------------------------------------------GTCAATGTCGTCAAATTCCAG--- | 21 | - | - | 1 | 1 | - | - | 15 | |
| ---------------------------------------TCAGAGTCAATGTCGTCAA---------- | 19 | - | - | - | - | - | 1 | 12 | |
| -------------------------------------------------TGTCGTCAAATTCCAGCGA | 19 | - | - | - | - | - | - | 5 | |
| -------TGTGCATCTATTGGTTTGGATCCCT------------------------------------ | 25 | - | - | - | - | - | - | 5 | |
| TTGCATTTGTGCATCTATTG------------------------------------------------ | 20 | - | - | - | - | - | - | 4 | |
| ----------------------------------------CAGAGTCAATGTCGTCAAA--------- | 19 | - | - | - | - | - | - | 3 | |
| -----------------TTGGTTTGGATCCCTACCG-------------------------------- | 19 | - | - | - | - | - | - | 3 | |
| -----------------TTGGTTTGGATCCCTACC--------------------------------- | 18 | - | - | - | - | - | - | 3 | |
| ---------TGCATCTATTGGTTTGGATCCCT------------------------------------ | 23 | - | - | - | - | - | - | 3 | |
| ------------------------------------------GAGTCAATGTCGTCAAATTCCAG--- | 23 | - | - | - | - | - | - | 3 | |
| -------TGTGCATCTATTGGTTTGG------------------------------------------ | 19 | - | - | - | - | - | - | 3 | |
| -------TGTGCATCTATTGGTTTGGA----------------------------------------- | 20 | - | - | - | - | - | - | 2 | |
| -----------------------------------------AGAGTCAATGTCGTCAAAT-------- | 19 | - | - | - | - | - | - | 2 | |
| ------------------------------------------GAGTCAATGTCGTCAAATTC------ | 20 | - | - | - | - | - | - | 1 | |
| -------TGTGCATCTATTGGTTTGGAT---------------------------------------- | 21 | - | - | - | - | - | - | 1 | |
| ---------------------------TCCCTACCGGCCTCAGAGTCAATGTC--------------- | 26 | 1 | - | - | - | - | - | - | |
| ---------------------------------------TCAGAGTCAATGTCGTCA----------- | 18 | - | 1 | - | - | - | - | - | |
| -----TTTGTGCATCTATTGGTTTG------------------------------------------- | 20 | - | - | - | - | - | - | 1 | |
| -TGCATTTGTGCATCTATTGGTTTG------------------------------------------- | 24 | - | - | - | - | - | - | 1 | |
| ------------------------------------------GAGTCAATGTCGTCAAATTCCA---- | 22 | - | - | - | - | - | - | 1 | |
| ------------------------------------GCCTCAGAGTCAATGTCGTCA----------- | 21 | - | - | - | - | - | 1 | - | |
| ---------TGCATCTATTGGTTTGGATCCC------------------------------------- | 22 | - | - | - | - | - | - | 1 | |
| -------------------------------TACCGGCCTCAGAGTCAATG----------------- | 20 | - | - | - | - | - | - | 1 | |
| -------------TCTATTGGTTTGGATCCCT------------------------------------ | 19 | - | - | - | - | - | - | 1 | |
| ---------------------------------------TCAGAGTCAATGTCGTCAAATTC------ | 23 | - | - | - | - | - | - | 1 | |
| rat | ttgcatttgtgcatctattggtttggatccctaccggccTCAGAGTCAATGTCGTCAAATTCCAGcga | ||||||||
| ******************************************************************** | |||||||||
| rat | (((((((((.((...(((((..((.((..((....))..)).))..)))))..)))))))....)))) | 0.580 -11.00 | |||||||
| rat | chromosome:8:72052625:72052692:-1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_randfoldOK (1 loci)
sblock5850 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.50/0.60 | 18/23/0.61 | 0.4 0.0 0.3 0.0 0.0 | 3.0 0.8 0.0 0.0 0.0 | 40 5 3 1 1 | 0 0 0 0 0 | 2 1 1 1 1 | 0 0 0 0 0 | 3 26 54 35 12 | 36 15 -12 -2 19 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 3 7 7 7 7 | nd nd nd nd nd | 0.52 0.22 0.45 0.30 0.18 | 10 2 4 2 2 | 56 | 3 | 0 | 0 |
| reads | miRBase family seed | ||||
| seed | ----GCAGGUG------------------------------------------------------------------------------------------------------------- | 20 | novel | ||
| seed | -----CAGGUGU------------------------------------------------------------------------------------------------------------ | 15 | novel | ||
| seed | ------------------------------------------------------GCAGGUG----------------------------------------------------------- | 8 | novel | ||
| seed | -------------------------------------------------------CAGGUGU---------------------------------------------------------- | 4 | novel | ||
| seed | ---------------------------GGUGUCU-------------------------------------------------------------------------------------- | 3 | novel | ||
| seed | ---------------------------------------------------------------------------------------GGUGUCU-------------------------- | 3 | novel | ||
| seed | --------------------------------------------------------AGGUGUC--------------------------------------------------------- | 2 | novel | ||
| seed | ------------------------------------------------------------------AGGUGUC----------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T3S1 | T4S1 | |||
| ---TGCAGGTGTCTACAGGTG--------------------------------------------------------------------------------------------------- | 18 | - | - | 5 | |
| ---TGCAGGTGTCTACAGGTGTCAGC---------------------------------------------------------------------------------------------- | 23 | - | - | 5 | |
| -----------------------------------------------------TGCAGGTGTCTACAGGTG------------------------------------------------- | 18 | - | - | 5 | |
| ----GCAGGTGTCTACAGGTGTCAG----------------------------------------------------------------------------------------------- | 21 | - | 2 | 2 | |
| ---TGCAGGTGTCTACAGGTGTCAG----------------------------------------------------------------------------------------------- | 22 | - | - | 4 | |
| ----GCAGGTGTCTACAGGTGTCAGCA--------------------------------------------------------------------------------------------- | 23 | - | 2 | 2 | |
| ----GCAGGTGTCTACAGGTGTCAGC---------------------------------------------------------------------------------------------- | 22 | - | - | 3 | |
| ---TGCAGGTGTCTACAGGTGTCA------------------------------------------------------------------------------------------------ | 21 | - | 1 | 2 | |
| --------------------------------------------------------------------------------------AGGTGTCTGCAGGTGTCT---------------- | 18 | - | - | 2 | |
| ----GCAGGTGTCTACAGGTGTC------------------------------------------------------------------------------------------------- | 19 | - | - | 2 | |
| -------------------------------------------------------CAGGTGTCTACAGGTGTCTA--------------------------------------------- | 20 | - | - | 2 | |
| -----------------------------------------------------TGCAGGTGTCTACAGGTGTC----------------------------------------------- | 20 | - | - | 2 | |
| ------------------------------------------------------GCAGGTGTCTACAGGTGTC----------------------------------------------- | 19 | - | - | 2 | |
| ---TGCAGGTGTCTACAGGTGTC------------------------------------------------------------------------------------------------- | 20 | - | - | 2 | |
| --------------------------AGGTGTCTGCAGGTGTCT---------------------------------------------------------------------------- | 18 | - | - | 2 | |
| --------------------------------------------------------------------------------------AGGTGTCTGCAGGTGTCTGCAG------------ | 22 | 1 | - | - | |
| ------------------------------------------------------GCAGGTGTCTACAGGTGTCTA--------------------------------------------- | 21 | - | - | 1 | |
| ----GCAGGTGTCTACAGGTGT-------------------------------------------------------------------------------------------------- | 18 | - | - | 1 | |
| -----------------------------------------------------TGCAGGTGTCTACAGGTGT------------------------------------------------ | 19 | - | - | 1 | |
| -----------------------------------------------------------------CAGGTGTCTACAGGTGGCTG----------------------------------- | 20 | - | - | 1 | |
| ----GCAGGTGTCTACAGGTGTCA------------------------------------------------------------------------------------------------ | 20 | - | - | 1 | |
| ------------------------------------------------------GCAGGTGTCTACAGGTGT------------------------------------------------ | 18 | - | - | 1 | |
| ---TGCAGGTGTCTACAGGTGT-------------------------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| --------------------------AGGTGTCTGCAGGTGTCTGCAA------------------------------------------------------------------------ | 22 | - | - | 1 | |
| rat | gtcTGCAGGTGTCTACAGGTGTCAGCAGGTGTCTGCAGGTGTCTgcaagtgtcTGCAGGTGTCTACAGGTGTCTAcaggtggctgcAGGTGTCTGCAGGTGTCTgcaggtgtctgcaggc | ||||
| ************************************************************************************************************************ | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000023657 ENSRNOG00000017546 NP_001104280.1 | ||||
| rat | (((((((((..(((..........(((((..((((((((..((((((..((((((.(((..((....))..))).))))))..))))))..))))))))..))))))))..))))))))) | 0.470 -61.30 | |||
| rat | chromosome:19:23093582:23093701:1 | Same_strand|Intronic_coding|ENSRNOT00000023657|ENSRNOG00000017546 ## ENSRNOG00000017546|protein_coding|NP_001104280.1|myosin light chain kinase [Source:RefSeq_peptide;Acc:NP_001104280] ## {Repeats: trf 81 103 0 class=trf,trf 38 70 0 class=trf,trf 108 130 0 class=trf,trf 129 153 0 class=trf,trf 162 200 0 class=trf,trf 71 91 0 class=trf,trf 142 160 0 class=trf} |
novel_lenNOK_cloningHIGH_multiarm_DicerOK_5varHIGH_nonpairedHIGH_bulgeHIGH (1 loci)
sblock7115 [novel_lenNOK_cloningHIGH_multiarm_DicerOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.263 | no | no | 0.32/0.61 | 18/26/0.37 | 0.6 0.0 0.0 1.5 0.0 0.0 2.1 | 4.3 0.0 0.0 4.8 0.0 0.0 1.5 | 7 33 7 4 1 2 10 | 0 0 0 0 0 0 0 | 3 5 3 1 1 1 5 | 0 0 0 0 0 0 0 | 4 17 40 51 35 30 11 | 30 24 1 -19 2 6 17 | 5arm 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm 3arm 3arm | 1 1 1 1 1 2 2 | nd nd nd nd nd nd nd | 0.55 0.58 0.42 0.44 0.39 0.37 0.50 | 8 8 6 5 7 5 8 | 114 | 9 | 1 | 2 |
| reads | miRBase family seed | ||||||||||
| seed | ------------------UGAACAA----------------------------------------------------------------------------------------------- | 42 | novel | ||||||||
| seed | ------------------------------------------------------------------------------------------AAGAUUC----------------------- | 14 | novel | ||||||||
| seed | ----------------UCUGAAC------------------------------------------------------------------------------------------------- | 9 | novel | ||||||||
| seed | -----------------------------------------GUGACUU------------------------------------------------------------------------ | 7 | novel | ||||||||
| seed | -----CCCACCC------------------------------------------------------------------------------------------------------------ | 6 | novel | ||||||||
| seed | -----------------------------------------------------------------------------------AGGUGUU------------------------------ | 4 | novel | ||||||||
| seed | -------------------------------------------GACUUAC---------------------------------------------------------------------- | 4 | novel | ||||||||
| seed | -------------------GAACAAA---------------------------------------------------------------------------------------------- | 3 | novel | ||||||||
| seed | -----------------------------------------------UACAUAC------------------------------------------------------------------ | 2 | novel | ||||||||
| seed | ---------------------------------------------------------------------------------------------AUUCACA-------------------- | 2 | novel | ||||||||
| seed | -----------------CUGAACA------------------------------------------------------------------------------------------------ | 2 | novel | ||||||||
| seed | ----------------------------------------------------ACUGGAC------------------------------------------------------------- | 2 | novel | ||||||||
| seed | --------------------------------------------------------------------------------------------GAUUCAC--------------------- | 2 | novel | ||||||||
| seed | ------------------------------------------------------------------------AGGACAG----------------------------------------- | 2 | novel | ||||||||
| seed | --------------------------------GUCGCAC--------------------------------------------------------------------------------- | 2 | novel | ||||||||
| seed | -----------------------------------------------------------------------------------------------UCACAAC------------------ | 2 | novel | ||||||||
| seed | -------------------------------------------------------GGACCUU---------------------------------------------------------- | 2 | novel | ||||||||
| seed | --------------------------------------------------------------------CAACAGG--------------------------------------------- | 1 | novel | ||||||||
| seed | ---------------------------------------------------------------------------------------GUUAAGA-------------------------- | 1 | novel | ||||||||
| seed | ------------------------------------------------ACAUACU----------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ----------------------------------CGCACUU------------------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | -------------------------------CGUCGCA---------------------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | -------------------------------------------------------------------------------------------AGAUUCA---------------------- | 1 | novel | ||||||||
| seed | ---------CCCCAAU-------------------------------------------------------------------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| -----------------CTGAACAAAACAATCGTCG------------------------------------------------------------------------------------ | 19 | 1 | 1 | - | - | - | 1 | - | - | 33 | |
| -----------------------------------------------------------------------------------------TAAGATTCACAACAGCAGTG----------- | 20 | - | - | - | 1 | - | - | 1 | - | 7 | |
| ---------------TTCTGAACAAAACAATCGTC------------------------------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | 6 | |
| ----------------------------------------TGTGACTTACATACTGGAC------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 7 | |
| -----------------CTGAACAAAACAATCGTC------------------------------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | 4 | |
| ----------------------------------------------------------------------------------CAGGTGTTAAGATTCACAACAG---------------- | 22 | 1 | - | - | - | - | - | - | - | 3 | |
| ------------------------------------------TGACTTACATACTGGACCT----------------------------------------------------------- | 19 | - | - | - | - | - | - | - | 2 | 1 | |
| ------------------------------------------------------TGGACCTTGGAGGCCAACAGGACAG----------------------------------------- | 25 | - | - | - | - | - | - | - | - | 2 | |
| ----TCCCACCCCAATTCTGAACAAAAC-------------------------------------------------------------------------------------------- | 24 | - | 1 | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------------------------------TAAGATTCACAACAGCAGTGGGCC------- | 24 | 1 | - | - | - | - | - | - | 1 | - | |
| -------------------------------CGTCGCACTTGTGACTTACA--------------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 2 | |
| -----------------------------------------------------------------------CAGGACAGGCACAGGTGTT------------------------------ | 19 | - | - | - | - | - | - | - | - | 2 | |
| ----TCCCACCCCAATTCTGAAC------------------------------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | - | - | 1 | |
| -------------------------------------------------------------------------------------------AGATTCACAACAGCAGTGGGCC------- | 22 | 2 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------------------------TAAGATTCACAACAGCAGTGG---------- | 21 | - | - | - | 1 | - | - | - | - | 1 | |
| ------------------TGAACAAAACAATCGTCGCACTTGT----------------------------------------------------------------------------- | 25 | - | - | - | - | - | - | - | - | 2 | |
| -----------------------------------------------TACATACTGGACCTTGGAG------------------------------------------------------ | 19 | - | - | - | - | - | - | - | - | 1 | |
| ---------------TTCTGAACAAAACAATCGTCGCACT-------------------------------------------------------------------------------- | 25 | - | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------------------------------TAAGATTCACAACAGCAG------------- | 18 | - | - | - | - | - | - | - | - | 1 | |
| ----TCCCACCCCAATTCTGAACAAAACAA------------------------------------------------------------------------------------------ | 26 | - | - | - | - | - | - | - | - | 1 | |
| ----------------------------------------------TTACATACTGGACCTTGGAGGCC--------------------------------------------------- | 23 | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------------------------TTCACAACAGCAGTGGGCCA------ | 20 | - | - | - | - | - | - | - | - | 1 | |
| ----TCCCACCCCAATTCTGAACAAAACA------------------------------------------------------------------------------------------- | 25 | - | - | - | - | - | - | - | - | 1 | |
| ------------------TGAACAAAACAATCGTCGCACT-------------------------------------------------------------------------------- | 22 | - | - | 1 | - | - | - | - | - | - | |
| ---------------------------------------------------TACTGGACCTTGGAGGCCA-------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | |
| ----------------TCTGAACAAAACAATCGTCGCAC--------------------------------------------------------------------------------- | 23 | - | - | - | - | - | - | - | - | 1 | |
| ----------------TCTGAACAAAACAATCGTC------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | |
| -----------------CTGAACAAAACAATCGTCGCACTT------------------------------------------------------------------------------- | 24 | - | - | - | - | - | - | - | - | 1 | |
| ---------------TTCTGAACAAAACAATCGT-------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------CCAACAGGACAGGCACAG----------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------TACTGGACCTTGGAGGCC--------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | |
| ------------------------------------------TGACTTACATACTGGACCTT---------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------------------------------GATTCACAACAGCAGTGGG--------- | 19 | - | - | - | - | - | - | - | - | 1 | |
| ------------------------------TCGTCGCACTTGTGACTTACA--------------------------------------------------------------------- | 21 | - | - | - | - | - | - | - | - | 1 | |
| --------ACCCCAATTCTGAACAAAACAA------------------------------------------------------------------------------------------ | 22 | - | - | - | - | - | - | - | - | 1 | |
| ---------------------------------TCGCACTTGTGACTTACATACTG---------------------------------------------------------------- | 23 | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------TTACATACTGGACCTTGGAG------------------------------------------------------ | 20 | - | - | - | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------------------------------GATTCACAACAGCAGTGG---------- | 18 | - | - | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------------------------------------------------TTCACAACAGCAGTGGGCC------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------------------------------AAGATTCACAACAGCAGTGG---------- | 20 | - | - | - | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------------------------TGTTAAGATTCACAACAGCAGT------------ | 22 | - | - | - | - | - | - | - | - | 1 | |
| rat | cctctcccaccccaattCTGAACAAAACAATCGTCGcacttgtgacttacatactggaccttggaggccaacaggacaggcacaggtgttaagattcacaacagcagtgggccaccaggg | ||||||||||
| ************************************************************************************************************************ | |||||||||||
| rat | .((((.....((((...(((........((((...(((((((((.(((......(((.((.....))))).......))))))))))))...))))........))))))).....)))) | 0.850 -30.11 | |||||||||
| rat | chromosome:20:5534557:5534676:1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_DicerOK_loopOverlap (1 loci)
sblock1965 [novel_lenNOK_cloningHIGH_multiarm_DicerOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.305 | no | no | 0.38/0.58 | 18/26/0.42 | 1.0 0.3 0.4 | 0.5 2.6 0.2 | 2 24 18 | 0 0 0 | 1 2 5 | 0 0 0 | 16 9 7 | 0 -18 1 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.26 0.27 0.21 | 4 3 2 | 60 | 5 | 1 | 3 |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------CUGAACU--------------------------- | 20 | novel | ||||
| seed | ----------------------------------------------AAUGUAA------------------- | 16 | novel | ||||
| seed | ---------------------------------------------GAAUGUA-------------------- | 11 | novel | ||||
| seed | ----------------------------------------GAACUGA------------------------- | 5 | novel | ||||
| seed | -------------------------------------GCUGAAC---------------------------- | 3 | novel | ||||
| seed | -----------------------------------GGGCUGA------------------------------ | 2 | novel | ||||
| seed | ------------------------------------------ACUGAAU----------------------- | 1 | novel | ||||
| seed | -----------------AGGUCUC------------------------------------------------ | 1 | novel | ||||
| seed | -------------------GUCUCUU---------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T4S2 | T5S1 | |||
| ---------------------------------------------GAATGTAAAGGGACACAC--------- | 18 | 1 | - | 6 | 5 | - | |
| --------------------------------------------TGAATGTAAAGGGACACAC--------- | 19 | - | 1 | - | 5 | 1 | |
| -------------------------------------GCTGAACTGAATGTAAAGGG--------------- | 20 | 1 | - | - | - | 4 | |
| -------------------------------------GCTGAACTGAATGTAAAGGGACAC----------- | 24 | - | - | - | - | 5 | |
| -------------------------------------GCTGAACTGAATGTAAAGGGACACAC--------- | 26 | - | - | - | - | 4 | |
| ---------------------------------------TGAACTGAATGTAAAGGGACAC----------- | 22 | - | - | - | - | 3 | |
| -------------------------------------GCTGAACTGAATGTAAAGG---------------- | 19 | - | - | - | - | 2 | |
| -------------------------------------GCTGAACTGAATGTAAAG----------------- | 18 | - | - | - | - | 2 | |
| --------------------------------------------TGAATGTAAAGGGACACACAG------- | 21 | - | - | - | - | 2 | |
| ------------------------------------GGCTGAACTGAATGTAAAG----------------- | 19 | - | - | - | - | 2 | |
| -------------------------------------GCTGAACTGAATGTAAAGGGAC------------- | 22 | - | - | - | - | 2 | |
| ---------------------------------------------GAATGTAAAGGGACACACA-------- | 19 | - | - | 1 | 1 | - | |
| ----------------------------------TGGGCTGAACTGAATGTAAAGGGAC------------- | 25 | 1 | - | - | - | - | |
| --------------------------------------------TGAATGTAAAGGGACACACAGGAG---- | 24 | - | - | - | - | 1 | |
| ---------------------------------------------GAATGTAAAGGGACACACAG------- | 20 | - | - | - | - | 1 | |
| -----------------------------------------AACTGAATGTAAAGGGAC------------- | 18 | - | - | - | - | 1 | |
| --------------------------------------------TGAATGTAAAGGGACACA---------- | 18 | - | - | 1 | - | - | |
| ------------------GGTCTCTTTGCTGCCTTGG----------------------------------- | 19 | - | - | - | - | 1 | |
| ---------------------------------------TGAACTGAATGTAAAGGGACACAC--------- | 24 | 1 | - | - | - | - | |
| ----------------TAGGTCTCTTTGCTGCCTTG------------------------------------ | 20 | - | - | - | - | 1 | |
| ----------------------------------TGGGCTGAACTGAATGTAAAGGG--------------- | 23 | 1 | - | - | - | - | |
| ------------------------------------GGCTGAACTGAATGTAAAGGG--------------- | 21 | - | - | - | - | 1 | |
| ---------------------------------------------GAATGTAAAGGGACACACAGGAG---- | 23 | - | - | - | - | 1 | |
| ---------------------------------------TGAACTGAATGTAAAGGGACA------------ | 21 | - | - | - | - | 1 | |
| rat | ttgtgactttggggactaggtctctttgctgccttgGGCTGAACTGAATGTAAAGGGACACACAGgagcagc | ||||||
| ************************************************************************ | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | ||||||
| rat | ((((..((.((........((((((((((....((((......))))..)))))))))).)).))..)))). | 0.740 -18.10 | |||||
| rat | chromosome:1:129031732:129031803:1 | Same_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
novel_lenNOK_cloningHIGH_multiarm_DicerOK_shortStem (1 loci)
sblock6127 [novel_lenNOK_cloningHIGH_multiarm_DicerOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.132 | no | no | 0.28/0.41 | 18/22/0.69 | 0.0 0.0 | 0.0 0.0 | 44 1 | 0 0 | 8 1 | 0 0 | 3 1 | 23 27 | 5arm 3arm | 1 1 | nd nd | 0.20 0.27 | 2 2 | 71 | 8 | 1 | 2 |
| reads | miRBase family seed | |||||||||
| seed | ----GGAAAUG----------------------------------------------------------------------------------------- | 62 | novel | |||||||
| seed | -----GAAAUGA---------------------------------------------------------------------------------------- | 5 | novel | |||||||
| seed | ---UGGAAAU------------------------------------------------------------------------------------------ | 3 | novel | |||||||
| seed | ------------------------------------------------------------------------------UCCUAGU--------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---TGGAAATGATGAAATAGAGA----------------------------------------------------------------------------- | 20 | 4 | 4 | 7 | 1 | 5 | 2 | 12 | 12 | |
| ---TGGAAATGATGAAATAGAG------------------------------------------------------------------------------ | 19 | - | 2 | 3 | - | - | - | 3 | 3 | |
| ----GGAAATGATGAAATAGAGA----------------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | 3 | 1 | |
| ---TGGAAATGATGAAATAGA------------------------------------------------------------------------------- | 18 | 2 | - | - | - | - | - | 1 | 1 | |
| --TTGGAAATGATGAAATAG-------------------------------------------------------------------------------- | 18 | - | - | - | 1 | 1 | - | - | - | |
| --TTGGAAATGATGAAATAGAGA----------------------------------------------------------------------------- | 21 | - | - | - | 1 | - | - | - | - | |
| -----------------------------------------------------------------------------CTCCTAGTTTACTGTTTCCTTG- | 22 | - | - | 1 | - | - | - | - | - | |
| rat | tctTGGAAATGATGAAATAGAGAtatctgggtgtcgaatgttgctatgagtggacagttttaatacatgtagtaattctcctagtttactgtttccttgg | |||||||||
| **************************************************************************************************** | ||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000014384 ENSRNOG00000010768 Kpna4 | |||||||||
| rat | ((..((((((..((((.((((((...(((.((((..((..((((((....))).)))..))...)))).)))....)))).)).))))..))))))..)) | 0.830 -22.10 | ||||||||
| rat | chromosome:2:159084487:159084586:-1 | Same_strand|Intronic_coding|ENSRNOT00000014384|ENSRNOG00000010768 ## ENSRNOG00000010768|protein_coding|Kpna4|karyopherin (importin) alpha 4 [Source:RefSeq_peptide;Acc:NP_001014793] |
novel_lenNOK_cloningHIGH_multiarm_Multihit_bulgeHIGH (1 loci)
sblock171 [novel_lenNOK_cloningHIGH_multiarm_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.240 | no | no | 0.22/0.41 | 18/24/0.08 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 73 5 1 | 0 0 0 | 4 2 1 | 0 0 0 | 5 13 36 | 17 4 -5 | 5arm 5arm 3arm_loop | 30 30 30 | nd nd nd | 0.47 0.25 0.45 | 5 4 5 | 98 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------ACAACAG------------------------------------------------------------------------------------------- | 88 | novel | |||
| seed | --------------GAAAUAU----------------------------------------------------------------------------------- | 6 | novel | |||
| seed | -----------------------------------------------GGGUUGU-------------------------------------------------- | 1 | novel | |||
| seed | -------------------AUAAGCC------------------------------------------------------------------------------ | 1 | novel | |||
| seed | --------AACAGUG----------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -------CAACAGU------------------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S2 | T5S1 | |||
| -----TACAACAGTGAAATATAAG-------------------------------------------------------------------------------- | 19 | 2 | 9 | 1 | 73 | |
| -------------TGAAATATAAGCCTACTCCTAAGA------------------------------------------------------------------- | 24 | - | - | - | 5 | |
| -----TACAACAGTGAAATATAA--------------------------------------------------------------------------------- | 18 | 1 | - | - | 1 | |
| ------ACAACAGTGAAATATAAGC------------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| -------CAACAGTGAAATATAAGCCT----------------------------------------------------------------------------- | 20 | - | - | - | 1 | |
| -------------TGAAATATAAGCCTACTC------------------------------------------------------------------------- | 18 | 1 | - | - | - | |
| ----------------------------------------------TGGGTTGTTTTTTTTTTGGGGG------------------------------------ | 22 | - | - | - | 1 | |
| -----TACAACAGTGAAATATAAGCC------------------------------------------------------------------------------ | 21 | - | - | - | 1 | |
| ------------------TATAAGCCTACTCCTAAGA------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| rat | tttccTACAACAGTGAAATATAAGcctactcctaagatacatatgttgggttgttttttttttgggggggggggtttggaccatcataaaattttcctaggaag | |||||
| ******************************************************************************************************** | ||||||
| rat | .((((((.....((((....(((((((.(((((((((.(((..........))).....)))))))))...))))))).....))))..........)))))). | 0.700 -23.26 | ||||
| rat | chromosome:1:49005202:49005305:-1 | intergenic ## {Repeats: dust 49005238 49005252 0 class=dust} |
novel_lenNOK_cloningHIGH_multiarm_loopOverlap_bulgeHIGH (1 loci)
sblock9427 [novel_lenNOK_cloningHIGH_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.070 | no | no | 0.30/0.63 | 18/26/0.31 | 0.0 0.0 0.0 0.0 | 0.0 2.0 0.0 0.0 | 27 22 1 1 | 0 0 0 0 | 2 4 1 1 | 0 0 0 0 | 2 40 41 17 | 26 -9 0 25 | 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.24 0.36 0.45 0.37 | 4 4 4 4 | 62 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---GAAACAG------------------------------------------------------------------------------------------------------------ | 32 | novel | |||
| seed | -----------------------------------------CUUAGCA---------------------------------------------------------------------- | 26 | novel | |||
| seed | --UGAAACA------------------------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------------GCAUUCU------------------------------------------------------------------ | 1 | novel | |||
| seed | -----------------------------------------------------------------------------------GAGCUCU---------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------------AAAAUGU----------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S2 | T5S1 | T5S2 | |||
| --TGAAACAGTGCAACCGTGCAGACAG------------------------------------------------------------------------------------------- | 25 | - | - | 27 | - | |
| ----------------------------------------CCTTAGCATTCTCTAGAG------------------------------------------------------------ | 18 | 1 | - | 8 | 1 | |
| ----------------------------------------CCTTAGCATTCTCTAGAGAAAA-------------------------------------------------------- | 22 | - | - | 8 | - | |
| ----------------------------------------CCTTAGCATTCTCTAGAGAA---------------------------------------------------------- | 20 | 1 | - | 6 | - | |
| --TGAAACAGTGCAACCGTG-------------------------------------------------------------------------------------------------- | 18 | - | - | 2 | - | |
| --TGAAACAGTGCAACCGTGCAGACA-------------------------------------------------------------------------------------------- | 24 | 1 | - | 1 | - | |
| ----------------------------------------------------------------------------------GGAGCTCTCTGCTATCCGG----------------- | 19 | - | - | 1 | - | |
| --TGAAACAGTGCAACCGTGCAGAC--------------------------------------------------------------------------------------------- | 23 | 1 | - | - | - | |
| -TTGAAACAGTGCAACCGTGCAGACAG------------------------------------------------------------------------------------------- | 26 | 1 | - | - | - | |
| ---------------------------------------------------------GAAAATGTGTAGAGTTAAAC----------------------------------------- | 20 | - | - | 1 | - | |
| --------------------------------------------AGCATTCTCTAGAGAAAAT------------------------------------------------------- | 19 | - | - | 1 | - | |
| ----------------------------------------CCTTAGCATTCTCTAGAGA----------------------------------------------------------- | 19 | - | 1 | - | - | |
| rat | gtTGAAACAGTGCAACCGTGCAGACAGcccagcccccagtccttagcattctctagagaaaatgtgtagagttaaacgctcaggagctctctgctatccgggaactgttgctttcaat | |||||
| ********************************************************************************************************************** | ||||||
| rat | (((((((((((....(((.(((((.((((((((....((..((..(((((.((....)).)))))..))..))....)))..)).))).)))))....)))..))))))....))))) | 0.520 -32.60 | ||||
| rat | chromosome:5:114555518:114555635:-1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_loopOverlap_randfoldOK (1 loci)
sblock1827 [novel_lenNOK_cloningHIGH_multiarm_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.21/0.45 | 18/22/0.19 | 0.0 1.0 0.0 0.0 | 0.0 0.3 0.0 0.0 | 26 23 1 1 | 0 0 0 0 | 3 4 1 1 | 0 0 0 0 | 5 33 29 19 | 28 -2 4 13 | 5arm 3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.37 0.11 0.16 0.20 | 4 1 2 2 | 63 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------UCCAGCC------------------------------------------------------------------------------------------------- | 30 | novel | ||||
| seed | -----------------------------------------------------------UCAUUUU-------------------------------------------- | 11 | novel | ||||
| seed | ----------------------------------------------------------CUCAUUU--------------------------------------------- | 10 | novel | ||||
| seed | ---------------------------------------------------------CCUCAUU---------------------------------------------- | 10 | novel | ||||
| seed | ---------------------------------------------------------------UUUCAGC---------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------------------------------AACAAUA------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T4S2 | T5S1 | |||
| -----ATCCAGCCTAATGTAAAAG-------------------------------------------------------------------------------------- | 19 | 1 | - | 1 | - | 26 | |
| ---------------------------------------------------------CCTCATTTTCAGCATAACA---------------------------------- | 19 | 2 | 1 | - | - | 7 | |
| --------------------------------------------------------TCCTCATTTTCAGCATAACA---------------------------------- | 20 | 1 | - | - | - | 8 | |
| ----------------------------------------------------------CTCATTTTCAGCATAACAA--------------------------------- | 19 | - | - | - | 1 | 8 | |
| ----------------------------------------------------------CTCATTTTCAGCATAACA---------------------------------- | 18 | - | - | - | - | 2 | |
| -----ATCCAGCCTAATGTAAAAGGCC----------------------------------------------------------------------------------- | 22 | - | - | - | - | 1 | |
| --------------------------------------------------------------TTTTCAGCATAACAATAAT----------------------------- | 19 | - | - | - | - | 1 | |
| --------------------------------------------------------TCCTCATTTTCAGCATAAC----------------------------------- | 19 | 1 | - | - | - | - | |
| -----------------------------------------------------------------------TAACAATAATGTCGGCCTCT------------------- | 20 | 1 | - | - | - | - | |
| -----ATCCAGCCTAATGTAAAAGG------------------------------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| rat | catgaATCCAGCCTAATGTAAAAGgccacagttgttcttgtatgaagaagagcttcTCCTCATTTTCAGCATAACAAtaatgtcggcctcttttctagagtggaattatg | ||||||
| ************************************************************************************************************** | |||||||
| rat | (((((.((((..(((....((.((((((((((((((..(((.((((((.(((......))).))))))))).))))))..))).))))).))...)))..)))).))))) | 1.000 -32.70 | |||||
| rat | chromosome:1:102759130:102759239:1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
sblock25 [novel_lenNOK_cloningHIGH_multiarm_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.26/0.47 | 18/24/0.28 | 0.3 0.2 0.0 0.0 | 0.0 1.0 0.0 0.0 | 33 4 9 1 | 0 0 0 0 | 3 1 3 1 | 0 0 0 0 | 18 35 9 0 | 11 4 36 45 | 5arm 3arm 3arm 3arm | 2 2 2 2 | nd nd nd nd | 0.45 0.33 0.68 0.83 | 6 4 7 15 | 54 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------AACACCC------------------------------------------------------------------------------------------- | 25 | novel | ||
| seed | -------------------------------------------------------------------------------------------ACUCCCU-------------------- | 11 | novel | ||
| seed | -------------------AAACACC-------------------------------------------------------------------------------------------- | 11 | novel | ||
| seed | -----------------------------------------------------------UGGUCUA---------------------------------------------------- | 3 | novel | ||
| seed | ------------------------------------------------------------GGUCUAU--------------------------------------------------- | 1 | novel | ||
| seed | -----------------UUAAACA---------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------UAAACAC--------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------------------------------------------ACAUUAG----------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -------------------AAACACCCAGCAGGAAAGT-------------------------------------------------------------------------------- | 19 | - | 1 | 24 | |
| ------------------------------------------------------------------------------------------TACTCCCTAGACATTAGAT--------- | 19 | 1 | 1 | 9 | |
| ------------------TAAACACCCAGCAGGAAAGT-------------------------------------------------------------------------------- | 20 | - | - | 9 | |
| ----------------------------------------------------------TTGGTCTATTTCTTGAACAGT--------------------------------------- | 21 | - | - | 3 | |
| -----------------------------------------------------------TGGTCTATTTCTTGAACAGTTTAA----------------------------------- | 24 | - | - | 1 | |
| ---------------------------------------------------------------------------------------------------GACATTAGATTTAAAACCA | 19 | 1 | - | - | |
| ------------------TAAACACCCAGCAGGAAAG--------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| ------------------TAAACACCCAGCAGGAAA---------------------------------------------------------------------------------- | 18 | - | 1 | - | |
| -----------------TTAAACACCCAGCAGGAAAGT-------------------------------------------------------------------------------- | 21 | - | - | 1 | |
| ----------------CTTAAACACCCAGCAGGAAAGT-------------------------------------------------------------------------------- | 22 | 1 | - | - | |
| rat | tgtccacctgtatggtctTAAACACCCAGCAGGAAAGTataaccaaaatatgaaattattggtctatttcttgaacagtttaagggaccaTACTCCCTAGACATTAGATttaaaacca | ||||
| ********************************************************************************************************************** | |||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000044049 ENSRNOG00000040148 | ||||
| rat | ((((.....((((((((((((((......(((((((.....((((((((.....))).)))))...)))))))....)))))..)))))))))......))))............... | 0.990 -28.10 | |||
| rat | chromosome:1:13901807:13901924:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000044049|ENSRNOG00000040148 ## ENSRNOG00000040148|protein_coding|| |
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