other hairpins
novel_lenNOK_cloningHIGH_multiarm_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
novel_lenNOK_cloningHIGH_multiarm_shortStem_nonpairedHIGH_bulgeHIGH (1 loci)
sblock4658 [novel_lenNOK_cloningHIGH_multiarm_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.366 | no | no | 0.30/0.50 | 18/25/0.27 | 0.0 0.0 0.0 4.3 | 0.0 0.0 0.0 3.7 | 68 4 1 3 | 0 0 0 0 | 7 2 1 1 | 0 0 0 0 | 1 39 37 8 | 22 -10 -9 8 | 5arm 5arm_loop 3arm_loop 3arm | 1 1 2 2 | nd nd nd nd | 0.40 0.74 0.75 0.40 | 4 11 8 5 | 108 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | --ACAGAAA---------------------------------------------------------------------------------------------------- | 96 | novel | ||||||
| seed | ----------------------------------------GCAGGGC-------------------------------------------------------------- | 5 | novel | ||||||
| seed | ---CAGAAAU--------------------------------------------------------------------------------------------------- | 3 | novel | ||||||
| seed | ---------------------------------------------------------------------------UCUGGAA--------------------------- | 1 | novel | ||||||
| seed | ----------------------------------------------------------------------GACUUUC-------------------------------- | 1 | novel | ||||||
| seed | ------------------------------------------------------------------------------GGAAAAC------------------------ | 1 | novel | ||||||
| seed | -----------------------------------------------------AUCUUUA------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -CACAGAAATGACCTACAAAGCCTAA----------------------------------------------------------------------------------- | 25 | - | 1 | - | - | - | 68 | 1 | |
| -CACAGAAATGACCTACAAAG---------------------------------------------------------------------------------------- | 20 | 1 | 1 | 1 | - | 1 | 18 | - | |
| ---------------------------------------TGCAGGGCCATTTTATCTT--------------------------------------------------- | 19 | 1 | - | - | - | - | 4 | - | |
| --ACAGAAATGACCTACAAAG---------------------------------------------------------------------------------------- | 19 | - | 1 | - | - | - | 1 | - | |
| -CACAGAAATGACCTACAAAGCC-------------------------------------------------------------------------------------- | 22 | - | - | - | - | - | 2 | - | |
| --------------------------------------------------------------------------TTCTGGAAAACTATAGAGCT--------------- | 20 | - | - | - | - | - | 1 | - | |
| -CACAGAAATGACCTACAA------------------------------------------------------------------------------------------ | 18 | - | - | - | 1 | - | - | - | |
| --ACAGAAATGACCTACAAAGCCTAA----------------------------------------------------------------------------------- | 24 | - | - | - | - | - | 1 | - | |
| -CACAGAAATGACCTACAAA----------------------------------------------------------------------------------------- | 19 | - | - | 1 | - | - | - | - | |
| ---------------------------------------------------------------------TGACTTTCTGGAAAACTATAGAG----------------- | 23 | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------------------TGGAAAACTATAGAGCTGGAGGGG-------- | 24 | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------TATCTTTAAGGAATGCTTGA------------------------------------- | 20 | - | - | - | - | - | 1 | - | |
| rat | aCACAGAAATGACCTACAAAGCCTAAttgcagaagagaatgcagggccattttatctttaaggaatgcttgactttctggaaaactatagagctggaggggtggtggtg | ||||||||
| ************************************************************************************************************* | |||||||||
| rat | .(((....((.((((....((((((.((.((((((.....(((...((.............))..))).....)))))).)).....))).)))....)))).)).))) | 0.910 -24.12 | |||||||
| rat | chromosome:15:84142676:84142784:1 | intergenic |
novel_lenNOK_cloningHIGH_shortStem_5varHIGH_loopOverlap_bulgeHIGH (1 loci)
block1293741 [novel_lenNOK_cloningHIGH_shortStem_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.280 | no | no | 0.32/0.52 | 18/25/0.51 | 7.9 | 6.3 | 57 | 0 | 9 | 0 | 2 | -11 | 3arm | 2 | nd | 0.30 | 4 | 57 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | --------------------------------------------------------CAAUCUA----------------- | 10 | novel | ||||||||
| seed | ------------------------------------------------------AACAAUC------------------- | 10 | novel | ||||||||
| seed | ----------------------------------------------------------AUCUAGU--------------- | 9 | novel | ||||||||
| seed | ---------------------------------------------ACCAAUA---------------------------- | 8 | novel | ||||||||
| seed | -------------------------------------------------------ACAAUCU------------------ | 8 | novel | ||||||||
| seed | --------------------------------------------------UACCAAC----------------------- | 4 | novel | ||||||||
| seed | ------------------------------------------------AAUACCA------------------------- | 3 | novel | ||||||||
| seed | -------------------------------------------------AUACCAA------------------------ | 2 | novel | ||||||||
| seed | ----------------------------------------------CCAAUAC--------------------------- | 2 | novel | ||||||||
| seed | ---------------------------------------------------------AAUCUAG---------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------AATCTAGTCCCTCTCACAG---- | 19 | - | - | 1 | 1 | - | 3 | 1 | 1 | - | |
| -----------------------------------------------------CAACAATCTAGTCCCTCTCAC------ | 21 | - | - | - | 2 | - | - | - | 1 | 1 | |
| -------------------------------------------------------ACAATCTAGTCCCTCTCAC------ | 19 | - | 2 | - | - | - | - | - | - | 2 | |
| ------------------------------------------------------AACAATCTAGTCCCTCTCACAG---- | 22 | - | 1 | 1 | - | - | - | 1 | - | - | |
| -------------------------------------------------------ACAATCTAGTCCCTCTCACAG---- | 21 | 1 | - | 1 | - | - | - | - | 1 | - | |
| --------------------------------------------AACCAATACCAACAATCT------------------ | 18 | 1 | 1 | - | - | - | - | 1 | - | - | |
| --------------------------------------------AACCAATACCAACAATCTAGTCC------------- | 23 | - | - | - | - | - | - | - | - | 3 | |
| -----------------------------------------------------CAACAATCTAGTCCCTCTCACAG---- | 23 | - | 1 | - | - | 1 | - | 1 | - | - | |
| ---------------------------------------------------------AATCTAGTCCCTCTCACAGG--- | 20 | - | - | - | 2 | - | - | - | - | - | |
| -------------------------------------------------ATACCAACAATCTAGTCCC------------ | 19 | - | - | - | - | - | 1 | - | 1 | - | |
| ---------------------------------------------ACCAATACCAACAATCTA----------------- | 18 | - | - | - | - | - | - | - | 2 | - | |
| -------------------------------------------------------ACAATCTAGTCCCTCTCACAGGG-- | 23 | - | - | 2 | - | - | - | - | - | - | |
| ------------------------------------------------------AACAATCTAGTCCCTCTCAC------ | 20 | - | - | - | - | - | - | 1 | 1 | - | |
| --------------------------------------------------------CAATCTAGTCCCTCTCACAG---- | 20 | - | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------CAACAATCTAGTCCCTCTCA------- | 20 | - | - | 1 | - | - | - | - | - | - | |
| -------------------------------------------------ATACCAACAATCTAGTCCCTCTCAC------ | 25 | - | - | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------ACAATCTAGTCCCTCTCA------- | 18 | - | - | - | - | - | - | 1 | - | - | |
| ------------------------------------------------------AACAATCTAGTCCCTCTCACAGG--- | 23 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------AACAATCTAGTCCCTCTC-------- | 18 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------CAACAATCTAGTCCCTCTC-------- | 19 | - | - | - | - | - | - | - | - | 1 | |
| --------------------------------------------AACCAATACCAACAATCTA----------------- | 19 | - | 1 | - | - | - | - | - | - | - | |
| -----------------------------------------------CAATACCAACAATCTAGTC-------------- | 19 | - | 1 | - | - | - | - | - | - | - | |
| --------------------------------------------AACCAATACCAACAATCTAGTC-------------- | 22 | - | - | - | - | - | - | 1 | - | - | |
| -----------------------------------------------CAATACCAACAATCTAGTCCCTCTC-------- | 25 | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------CAATACCAACAATCTAGTCCCTC---------- | 23 | - | - | - | - | - | - | - | - | 1 | |
| -------------------------------------------------ATACCAACAATCTAGTCCCTCTC-------- | 23 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------AATACCAACAATCTAGTCCC------------ | 20 | - | - | - | - | - | 1 | - | - | - | |
| -----------------------------------------------------CAACAATCTAGTCCCTCT--------- | 18 | - | - | 1 | - | - | - | - | - | - | |
| ------------------------------------------------------AACAATCTAGTCCCTCTCA------- | 19 | - | - | - | - | - | - | 1 | - | - | |
| ------------------------------------------------AATACCAACAATCTAGTCC------------- | 19 | - | - | - | - | - | - | 1 | - | - | |
| rat | gctttctgtcagctcctggactctgtaccttcacaaatcttcctAACCAATACCAACAATCTAGTCCCTCTCACAGGGct | ||||||||||
| ******************************************************************************** | |||||||||||
| ------------------------------------------------------------------------------------------ | ENSRNOT00000042956 ENSRNOG00000013333 NP_001101145.1 | ||||||||||
| ------------------------------------------------------------------------------------------ | ENSRNOT00000044481 ENSRNOG00000013333 NP_001101145.1 | ||||||||||
| rat | (((..((((.((.....(((((.(((.............................)))....)))))..)).))))))). | 0.750 -8.95 | |||||||||
| rat | chromosome:2:140630787:140630866:1 | Opposite_strand|Intronic_coding|ENSRNOT00000042956|ENSRNOG00000013333 ## ENSRNOG00000013333|protein_coding|NP_001101145.1|glutamine repeat protein 1 [Source:RefSeq_peptide;Acc:NP_001101145] |
novel_lenNOK_cloningHIGH_shortStem_loopOverlap_nonpairedHIGH (1 loci)
block1867865 [novel_lenNOK_cloningHIGH_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.085 | no | no | 0.50/0.53 | 18/20/0.01 | 0.0 | 0.0 | 372 | 0 | 10 | 0 | 4 | -1 | 5arm_loop | 1 | nd | 0.44 | 3 | 462 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -----GGAGAGG--------------------------------- | 462 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----TGGAGAGGGGAATGACTT----------------------- | 18 | 104 | 100 | 8 | 4 | 19 | 23 | 48 | 67 | 53 | 31 | |
| ----TGGAGAGGGGAATGACTTGA--------------------- | 20 | 1 | 1 | - | - | - | - | - | 1 | - | - | |
| ----TGGAGAGGGGAATGACTTG---------------------- | 19 | 2 | - | - | - | - | - | - | - | - | - | |
| rat | ggtgTGGAGAGGGGAATGACTTgagcgggggttctagctcatact | |||||||||||
| ********************************************* | ||||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016033 ENSRNOG00000011968 Dnajc6 | |||||||||||
| rat | (((((.(((...(((((..((.....))..)))))..)))))))) | 1.000 -12.10 | ||||||||||
| rat | chromosome:5:122225634:122225678:1 | Same_strand|Intronic_coding|ENSRNOT00000016033|ENSRNOG00000011968 ## ENSRNOG00000011968|protein_coding|Dnajc6|DnaJ (Hsp40) homolog, subfamily C, member 6 Gene [Source:MGI (curated);Acc:Dnajc6-001] |
novel_lenNOK_cloningHIGH_shortStem_loopOverlap_randfoldOK (1 loci)
block1294144 [novel_lenNOK_cloningHIGH_shortStem_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.39/0.43 | 18/21/0.25 | 0.0 | 0.5 | 610 | 0 | 4 | 0 | 4 | -4 | 5arm_loop_3arm | 1 | nd | 0.22 | 3 | 615 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----GGAAUGA---------------------------------------- | 615 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T2S2 | T4S1 | T4S2 | |||
| ----TGGAATGATTTCCCTGTTG----------------------------- | 19 | 1 | - | 166 | 135 | |
| ----TGGAATGATTTCCCTGTT------------------------------ | 18 | 1 | - | 70 | 87 | |
| ----TGGAATGATTTCCCTGTTGT---------------------------- | 20 | - | 1 | 69 | 83 | |
| ----TGGAATGATTTCCCTGTTGTC--------------------------- | 21 | - | - | 2 | - | |
| rat | cgttTGGAATGATTTCCCTGTTGTcaggaagattgtttccttttccgaacgg | |||||
| **************************************************** | ||||||
| rat | (((((((((((((((.((((....)))).))))))).......)))))))). | 0.950 -17.31 | ||||
| rat | chromosome:2:141371445:141371496:1 | intergenic |
novel_lenNOK_cloningHIGH_shortStem_loopOverlap_randfoldOK_bulgeHIGH (1 loci)
block2198751 [novel_lenNOK_cloningHIGH_shortStem_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.56/0.62 | 18/21/0.03 | 0.0 | 0.0 | 45 | 0 | 9 | 0 | 2 | -3 | 5arm_loop | 1 | nd | 0.28 | 4 | 70 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | ---GGGGGUU-------------------------------------------- | 70 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --TGGGGGTTGGGGGTTTTT---------------------------------- | 18 | 29 | 16 | 6 | 5 | 2 | - | 3 | 4 | 2 | |
| --TGGGGGTTGGGGGTTTTTCCC------------------------------- | 21 | - | 1 | - | - | - | 1 | - | - | - | |
| --TGGGGGTTGGGGGTTTTTC--------------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| rat | ccTGGGGGTTGGGGGTTTTTcccatgcctatctaacccctccttcaacccacag | ||||||||||
| ****************************************************** | |||||||||||
| rat | .(((.((((((((((((................)))))).....)))))).))) | 1.000 -18.69 | |||||||||
| rat | chromosome:7:30356637:30356690:1 | intergenic |
novel_lenNOK_cloningHIGH_shortStem_mirtron_nonpairedHIGH (1 loci)
block138744 [novel_lenNOK_cloningHIGH_shortStem_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.079 | no | no | 0.28/0.41 | 18/25/0.62 | 0.0 | 1.1 | 35 | 0 | 10 | 0 | 3 | 19 | 3arm | 1 | 1 | 0.37 | 3 | 90 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ------------------------------------------------------------------------UCCUAUA------------------- | 72 | novel | |||||||||
| seed | -----------------------------------------------------------------------AUCCUAU-------------------- | 18 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------------ATCCTATAGCTTTTTTTCCCCAGA--- | 24 | 1 | - | 6 | 13 | 6 | 2 | - | 1 | - | 2 | |
| -----------------------------------------------------------------------ATCCTATAGCTTTTTTTCC-------- | 19 | - | - | 3 | 5 | 1 | 3 | - | 1 | - | - | |
| -----------------------------------------------------------------------ATCCTATAGCTTTTTTTCCCC------ | 21 | - | 1 | 1 | 5 | 2 | - | 1 | 1 | - | - | |
| -----------------------------------------------------------------------ATCCTATAGCTTTTTTTC--------- | 18 | - | - | 3 | 2 | - | 1 | 1 | - | 1 | - | |
| ----------------------------------------------------------------------CATCCTATAGCTTTTTTTC--------- | 19 | - | 1 | 3 | 1 | - | 2 | - | - | - | - | |
| ----------------------------------------------------------------------CATCCTATAGCTTTTTTTCCCCAGA--- | 25 | - | 1 | 1 | 2 | - | - | - | - | 2 | - | |
| -----------------------------------------------------------------------ATCCTATAGCTTTTTTTCCCCAG---- | 23 | - | - | 3 | - | - | 1 | - | - | - | - | |
| -----------------------------------------------------------------------ATCCTATAGCTTTTTTTCCCCA----- | 22 | - | - | - | 1 | - | 1 | - | 1 | - | 1 | |
| ----------------------------------------------------------------------CATCCTATAGCTTTTTTTCCCC------ | 22 | - | - | 1 | - | 1 | - | - | - | - | - | |
| ----------------------------------------------------------------------CATCCTATAGCTTTTTTTCCCCA----- | 23 | - | - | - | - | - | 1 | - | - | - | - | |
| -----------------------------------------------------------------------ATCCTATAGCTTTTTTTCCC------- | 20 | - | - | - | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------------------CATCCTATAGCTTTTTTTCC-------- | 20 | - | - | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------CATCCTATAGCTTTTTTTCCC------- | 21 | - | - | - | - | 1 | - | - | - | - | - | |
| rat | gggtgggaggttggcccagagtgttaggagtgggacaggggggagaggcgggctccttctgcttcccactcATCCTATAGCTTTTTTTCCCCAGAtcc | |||||||||||
| ************************************************************************************************** | ||||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>> | ENSRNOT00000041777 ENSRNOG00000001738 Eif4g1 | |||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>> | ENSRNOT00000040029 ENSRNOG00000001738 Eif4g1 | |||||||||||
| rat | .((.((((((..(((....((......((((((((..((..((((.......))))..))...))))))))...))...)))..))))))))...... | 0.610 -38.00 | ||||||||||
| rat | chromosome:11:82465566:82465663:-1 | Same_strand|Boundary_coding|ENSRNOT00000041777|ENSRNOG00000001738 ## ENSRNOG00000001738|protein_coding|Eif4g1| |
novel_lenNOK_cloningHIGH_shortStem_mirtron_nonpairedHIGH_bulgeHIGH (1 loci)
block2532387 [novel_lenNOK_cloningHIGH_shortStem_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.470 | no | no | 0.32/0.39 | 18/24/0.62 | 0.0 | 1.1 | 59 | 0 | 10 | 0 | 2 | 19 | 3arm | 1 | 0 | 0.39 | 4 | 92 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -------------------------------------------------------------------------------AAACUCA---------------- | 82 | novel | |||||||||
| seed | ------------------------------------------------------------------------------CAAACUC----------------- | 4 | novel | |||||||||
| seed | -----------------------------------------------------------------------------ACAAACU------------------ | 3 | novel | |||||||||
| seed | --------------------------------------------------------------------------AAUACAA--------------------- | 1 | novel | |||||||||
| seed | --------------------------------------------------------------------------------AACUCAC--------------- | 1 | novel | |||||||||
| seed | ----------------------------------------------------------------------------UACAAAC------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------------------CAAACTCACCATGTTTTCTAGA-- | 22 | 1 | 1 | 5 | 9 | 4 | 9 | 1 | 1 | 3 | 6 | |
| ------------------------------------------------------------------------------CAAACTCACCATGTTTTCT----- | 19 | 1 | 2 | 4 | 1 | 5 | 5 | - | 1 | 1 | 2 | |
| ------------------------------------------------------------------------------CAAACTCACCATGTTTTC------ | 18 | - | - | 2 | 1 | 3 | 1 | 1 | - | - | 1 | |
| ------------------------------------------------------------------------------CAAACTCACCATGTTTTCTAG--- | 21 | - | - | - | 3 | 1 | 2 | - | - | - | - | |
| ------------------------------------------------------------------------------CAAACTCACCATGTTTTCTA---- | 20 | - | - | - | 3 | - | - | 1 | - | - | - | |
| -----------------------------------------------------------------------------ACAAACTCACCATGTTTTC------ | 19 | - | - | - | - | 1 | - | - | 1 | - | - | |
| ----------------------------------------------------------------------------TACAAACTCACCATGTTT-------- | 18 | - | - | - | - | - | 1 | - | - | 1 | - | |
| -------------------------------------------------------------------------------AAACTCACCATGTTTTCTAG--- | 20 | - | - | - | - | 1 | - | - | - | - | - | |
| ---------------------------------------------------------------------------ATACAAACTCACCATGTTTTCT----- | 22 | - | - | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------------------ACAAACTCACCATGTTTTCTAGA-- | 23 | - | - | 1 | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------------------CAAACTCACCATGTTTTCTAGAT- | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------GAATACAAACTCACCATGTTTTCT----- | 24 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------------------------------------------------------TACAAACTCACCATGTTTTCTAGA-- | 24 | - | - | 1 | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------------ACAAACTCACCATGTTTTCTAG--- | 22 | - | - | - | - | - | - | - | - | - | 1 | |
| rat | cataattttgacattgtaagtacatcatgtatttttttaaactgctgtctaaattttattttgagtatttattgaataCAAACTCACCATGTTTTCTAGAtg | |||||||||||
| ****************************************************************************************************** | ||||||||||||
| >>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>> | ENSRNOT00000022873 ENSRNOG00000016963 Q3KR60_RAT | |||||||||||
| rat | (((......(((((.((.(((......(((((((...((((.((((...((((......))))))))))))..))))))).))).)).)))))......))) | 0.420 -12.10 | ||||||||||
| rat | chromosome:9:84005903:84006004:-1 | Same_strand|Boundary_coding|ENSRNOT00000022873|ENSRNOG00000016963 ## Same_strand|Boundary_non-coding|ENSRNOT00000022822|ENSRNOG00000016963 ## ENSRNOG00000016963|protein_coding|Q3KR60_RAT|Trip12 protein. [Source:UniProtKB/TrEMBL;Acc:Q3KR60] |
novel_lenNOK_cloningOK_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH (1 loci)
block1470016 [novel_lenNOK_cloningOK_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.015 | no | no | 0.30/0.65 | 18/25/0.58 | 5.8 0.0 | 3.6 0.0 | 20 1 | 0 0 | 6 1 | 0 0 | 11 9 | -11 -1 | 3arm_loop 3arm | 1 1 | nd nd | 0.60 0.40 | 8 3 | 33 | 6 | 0 | 2 |
| reads | miRBase family seed | |||||||
| seed | --------------CCUGCAU------------------------------------------ | 7 | novel | |||||
| seed | --------------------------UCAAACU------------------------------ | 6 | miR-290 | |||||
| seed | ---------------------------CAAACUU----------------------------- | 5 | novel | |||||
| seed | -----------------GCAUUUG--------------------------------------- | 4 | novel | |||||
| seed | -----------------------GUUUCAA--------------------------------- | 3 | novel | |||||
| seed | ------------UUCCUGC-------------------------------------------- | 3 | novel | |||||
| seed | -------------------AUUUGUU------------------------------------- | 1 | novel | |||||
| seed | ----------------UGCAUUU---------------------------------------- | 1 | novel | |||||
| seed | ---------------------UUGUUUC----------------------------------- | 1 | novel | |||||
| seed | -------------UCCUGCA------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------GCCUUGC--------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S2 | T5S1 | |||
| -------------TCCTGCATTTGTTTCAAACTTTG--------------------------- | 23 | 1 | - | - | - | - | 6 | |
| -------------------------TTCAAACTTTGCCTTGCCG------------------- | 19 | - | - | 1 | - | 1 | 4 | |
| --------------------------TCAAACTTTGCCTTGCCGGA----------------- | 20 | - | 1 | - | - | - | 4 | |
| ----------------TGCATTTGTTTCAAACTTTG--------------------------- | 20 | 1 | - | - | - | - | 3 | |
| -----------TTTCCTGCATTTGTTTCAAACTTTG--------------------------- | 25 | - | - | - | - | - | 3 | |
| ----------------------TGTTTCAAACTTTGCCTTG---------------------- | 19 | - | - | 1 | - | - | 1 | |
| ------------------CATTTGTTTCAAACTTTGC-------------------------- | 19 | - | - | - | - | - | 1 | |
| ----------------------TGTTTCAAACTTTGCCTTGCCGGA----------------- | 24 | - | - | - | - | - | 1 | |
| ---------------CTGCATTTGTTTCAAACT------------------------------ | 18 | - | - | - | - | - | 1 | |
| --------------------TTTGTTTCAAACTTTGCCT------------------------ | 19 | - | - | - | 1 | - | - | |
| ----------------------------------TGCCTTGCCGGATCCCAGTC--------- | 20 | - | - | - | - | - | 1 | |
| ------------TTCCTGCATTTGTTTCAAACTTTG--------------------------- | 24 | 1 | - | - | - | - | - | |
| rat | cagacttctggTTTCCTGCATTTGTTTCAAACTTTGCCTTGCCGGAtcccagtcactgctctg | |||||||
| *************************************************************** | ||||||||
| rat | (((....((((..(((.(((...((..........))..))).)))..))))...)))..... | 1.000 -15.60 | ||||||
| rat | chromosome:3:76962836:76962898:1 | intergenic |
novel_lenNOK_cloningOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)
block1728961 [novel_lenNOK_cloningOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.169 | no | no | 0.50/0.68 | 19/25/0.62 | 0.0 2.2 | 0.0 1.3 | 4 6 | 0 0 | 3 3 | 0 0 | 21 3 | -2 6 | 3arm_loop 3arm | 49 54 | nd nd | 0.35 0.36 | 4 6 | 13 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------CCGUUGU--------------------------------- | 4 | novel | ||||
| seed | -----------------------------------------------UGACAUG--------------------- | 3 | novel | ||||
| seed | ------------------------------------CGUUGUG-------------------------------- | 2 | novel | ||||
| seed | -------------------------------------------GAUCUGA------------------------- | 1 | novel | ||||
| seed | ---------------------------------------------UCUGACA----------------------- | 1 | novel | ||||
| seed | ------------------------------------------------------CCGCCUG-------------- | 1 | novel | ||||
| seed | ----------------------------------UCCGUUG---------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T3S1 | T4S1 | T5S1 | |||
| ----------------------------------TCCGTTGTGGATCTGACATG--------------------- | 20 | - | - | 4 | - | - | |
| -----------------------------------CCGTTGTGGATCTGACATG--------------------- | 19 | 1 | 1 | - | - | - | |
| ----------------------------------------------CTGACATGCCGCCTGGAGAAACC------ | 23 | - | 2 | - | - | - | |
| ----------------------------------------------CTGACATGCCGCCTGGAGAAACCTG---- | 25 | - | 1 | - | - | - | |
| ------------------------------------------GGATCTGACATGCCGCCTGGAGAA--------- | 24 | - | 1 | - | - | - | |
| ---------------------------------ATCCGTTGTGGATCTGACATGCC------------------- | 23 | - | - | 1 | - | - | |
| -----------------------------------------------------GCCGCCTGGAGAAACCTGC--- | 19 | - | - | - | - | 1 | |
| --------------------------------------------ATCTGACATGCCGCCTGGAGAAACC------ | 25 | - | - | - | 1 | - | |
| rat | tggcatggtcttccgtgttcctacccccaatgtaTCCGTTGTGGATCTGACATGCCGCCTGGAGAAACCtgccaa | ||||||
| *************************************************************************** | |||||||
| rat | (((((.(((((((((((((.....((.(((((....))))).))....))))))......)))))..))))))). | 0.900 -21.20 | |||||
| rat | chromosome:5:37434371:37434445:-1 | intergenic |
novel_lenNOK_cloningOK_Multihit_randfoldOK (1 loci)
block962611 [novel_lenNOK_cloningOK_Multihit_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 11 | 0 | 4 | 0 | 14 | 0 | 3arm | 40 | nd | 0.28 | 2 | 12 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------------------------------CAGUGCA------------------------ | 12 | miR-148b/152 | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S2 | T4S1 | |||
| -----------------------------------------------------------------------------TCAGTGCATGACAAGGTT-------------- | 18 | 4 | 1 | 4 | 3 | |
| rat | gttagcagtgatgtgtttgcagggagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCAGTGCATGACAAGGTTaatctgcaagagca | |||||
| ************************************************************************************************************* | ||||||
| rat | (((.((((((((.((((((((..((....................................................))..)))).))))..))))..))))...))). | 0.990 -12.02 | ||||
| rat | chromosome:1:51493828:51493936:1 | intergenic |
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