other hairpins
novel_lenNOK_cloningOK_Multihit_randfoldOK (1 loci)
novel_lenNOK_cloningOK_Multihit_shortStem_5varHIGH_nonpairedHIGH (1 loci)
block845659 [novel_lenNOK_cloningOK_Multihit_shortStem_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.970 | no | no | 0.33/0.45 | 18/24/0.58 | 2.0 | 0.6 | 7 | 0 | 3 | 0 | 1 | 13 | 5arm | 26 | nd | 0.37 | 2 | 12 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --GAAAUAU------------------------------------------------------------------------------------ | 6 | novel | ||
| seed | ---------AAGCCUA----------------------------------------------------------------------------- | 5 | novel | ||
| seed | -------AUAAGCC------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S1 | |||
| -TGAAATATAAGCCTACTCCTAAGA-------------------------------------------------------------------- | 24 | - | - | 5 | |
| --------TAAGCCTACTCCTAAGATC------------------------------------------------------------------ | 19 | 1 | - | 2 | |
| --------TAAGCCTACTCCTAAGATCCA---------------------------------------------------------------- | 21 | 1 | - | - | |
| --------TAAGCCTACTCCTAAGATCC----------------------------------------------------------------- | 20 | - | 1 | - | |
| ------TATAAGCCTACTCCTAAGA-------------------------------------------------------------------- | 19 | - | - | 1 | |
| -TGAAATATAAGCCTACTC-------------------------------------------------------------------------- | 18 | 1 | - | - | |
| rat | gTGAAATATAAGCCTACTCCTAAGATCcatatattgttgtttttttttttttgcaccatcataaagttgtcctaggaagagatcaggtgcacc | ||||
| ********************************************************************************************* | |||||
| rat | (((........((((..(((((.(((...(((..((.(((............))).))..))).....))).))))).......)))).))). | 0.640 -10.30 | |||
| rat | chromosome:1:50786599:50786691:-1 | intergenic |
novel_lenNOK_cloningOK_Multihit_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH (1 loci)
block2928723 [novel_lenNOK_cloningOK_Multihit_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.542 | no | no | 0.42/0.61 | 18/23/0.29 | 7.7 | 9.3 | 14 | 0 | 7 | 0 | 2 | 14 | 3arm | 11 | nd | 0.35 | 4 | 14 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------------------------------------------------CUACCUC---------------- | 5 | novel | ||||||
| seed | -----------------------------------------------------------------GGACCUG---------------------------- | 2 | novel | ||||||
| seed | ----------------------------------------------------------------------------ACUACCU----------------- | 2 | novel | ||||||
| seed | ---------------------------------------------------------------------CUGACAG------------------------ | 2 | novel | ||||||
| seed | --------------------------------------------------------------------CCUGACA------------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------------------ACCUGAC-------------------------- | 1 | novel | ||||||
| seed | ------------------------------------------------------------------------------UACCUCA--------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | |||
| ----------------------------------------------------------------------------ACTACCTCATGAAGATCCT----- | 19 | 1 | 1 | - | - | 1 | - | 1 | |
| ----------------------------------------------------------------GGGACCTGACAGACTACC------------------ | 18 | - | - | - | 2 | - | - | - | |
| --------------------------------------------------------------------CCTGACAGACTACCTCATGAAGA--------- | 23 | - | - | - | - | 1 | - | 1 | |
| ---------------------------------------------------------------------------GACTACCTCATGAAGATCC------ | 19 | - | - | - | - | 1 | - | - | |
| -----------------------------------------------------------------------------CTACCTCATGAAGATCCT----- | 18 | - | - | - | - | 1 | - | - | |
| ----------------------------------------------------------------------------ACTACCTCATGAAGATCCTGAC-- | 22 | 1 | - | - | - | - | - | - | |
| ---------------------------------------------------------------------------GACTACCTCATGAAGATCCT----- | 20 | - | - | - | 1 | - | - | - | |
| ------------------------------------------------------------------GACCTGACAGACTACCTCA--------------- | 19 | - | - | 1 | - | - | - | - | |
| -------------------------------------------------------------------ACCTGACAGACTACCTCA--------------- | 18 | - | - | - | - | - | 1 | - | |
| rat | acagtgcccatctatgagggctgcgcctttccccacgccatcttgcacctggacctggctggctGGGACCTGACAGACTACCTCATGAAGATCCTGACtg | ||||||||
| **************************************************************************************************** | |||||||||
| rat | .((((....((((((((((.(((((...(((((((.(((((((.......)))..)))))))..))))..)).)))....))))))..))))....)))) | 0.990 -27.80 | |||||||
| rat | chromosome:X:2785661:2785760:1 | intergenic |
novel_lenNOK_cloningOK_loopOverlap_mirtron (1 loci)
block692122 [novel_lenNOK_cloningOK_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.143 | no | no | 0.21/0.22 | 18/19/0.00 | 0.0 | 0.0 | 8 | 0 | 5 | 0 | 5 | -2 | 3arm_loop | 1 | 3 | 0.26 | 3 | 12 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------------------------UUUUGUU---------------- | 12 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T3S1 | T3S2 | T4S2 | |||
| --------------------------------------------------TTTTTGTTTTTTTGGGAAA----- | 19 | 6 | 2 | 1 | - | 1 | |
| --------------------------------------------------TTTTTGTTTTTTTGGGAA------ | 18 | 1 | - | - | 1 | - | |
| rat | gaaagtgttctcaaaacggatgtacattttcttctctcttttttttttcaTTTTTGTTTTTTTGGGAAAtttca | ||||||
| ************************************************************************** | |||||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++ | ENSRNOT00000061143 ENSRNOG00000039838 | ||||||
| rat | ((((...(((((((((((((................................)))))))...)))))).)))). | 0.600 -9.35 | |||||
| rat | chromosome:18:22249520:22249593:-1 | Same_strand|Intronic_coding|ENSRNOT00000061143|ENSRNOG00000039838 ## ENSRNOG00000039838|protein_coding|| ## {Repeats: A-rich 1 14 -1 class=Low_complexity,dust 22249530 22249544 0 class=dust,A-rich 1 37 -1 class=Low_complexity} |
novel_lenNOK_cloningOK_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH (1 loci)
block1891280 [novel_lenNOK_cloningOK_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.075 | no | no | 0.56/0.60 | 18/24/0.61 | 0.0 | 1.5 | 26 | 0 | 8 | 0 | 24 | -7 | 5arm_loop | 1 | 0 | 0.47 | 4 | 38 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | -------------------------CACCCUA-------------------------------------------------------------- | 38 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S2 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------TCACCCTACTGCTGGCTTGCA------------------------------------------------- | 21 | 1 | 1 | 1 | 3 | 3 | 1 | 2 | 1 | |
| ------------------------TCACCCTACTGCTGGCTTG--------------------------------------------------- | 19 | - | - | 2 | 4 | 3 | 3 | - | - | |
| ------------------------TCACCCTACTGCTGGCTTGCAG------------------------------------------------ | 22 | - | - | - | 1 | 2 | - | - | 2 | |
| ------------------------TCACCCTACTGCTGGCTT---------------------------------------------------- | 18 | - | - | 1 | - | 1 | - | 1 | - | |
| ------------------------TCACCCTACTGCTGGCTTGC-------------------------------------------------- | 20 | - | - | 1 | 1 | - | 1 | - | - | |
| ------------------------TCACCCTACTGCTGGCTTGCAGTC---------------------------------------------- | 24 | - | - | 2 | - | - | - | - | - | |
| rat | ggctccctgagcccacgcatgtccTCACCCTACTGCTGGCTTGCAGTCcccagcctacaccctggtgtggacccgtctgcacaacgggaagcta | |||||||||
| ********************************************************************************************** | ||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000055950 ENSRNOG00000021437 O08591_RAT | |||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000055948 ENSRNOG00000021437 O08591_RAT | |||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000039341 ENSRNOG00000021437 O08591_RAT | |||||||||
| rat | (((((((((.((..(((...((((.((((....((..((((..........))))..))....)))).)))).)))..)).))..)))).))). | 0.780 -31.60 | ||||||||
| rat | chromosome:5:156295215:156295308:1 | Same_strand|Boundary_coding|ENSRNOT00000039341|ENSRNOG00000021437 ## Same_strand|Boundary_non-coding|ENSRNOT00000055950|ENSRNOG00000021437 ## ENSRNOG00000021437|protein_coding|O08591_RAT|Perlecan (Fragment). [Source:UniProtKB/TrEMBL;Acc:O08591] |
novel_lenNOK_cloningOK_loopOverlap_mirtron_randfoldOK (1 loci)
block3194552 [novel_lenNOK_cloningOK_loopOverlap_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.50/0.53 | 18/21/0.55 | 0.7 | 0.5 | 11 | 0 | 4 | 0 | 32 | -1 | 3arm | 1 | 0 | 0.10 | 1 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------------CUCCACA--------------------------------------------- | 7 | novel | |||
| seed | -------------------------------------------------------------------CCACAUU------------------------------------------- | 4 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S2 | T5S2 | |||
| ----------------------------------------------------------------ACTCCACATTTCCTCCTCCAG-------------------------------- | 21 | 1 | 2 | 1 | 1 | |
| ------------------------------------------------------------------TCCACATTTCCTCCTCCA--------------------------------- | 18 | 2 | - | - | 1 | |
| ----------------------------------------------------------------ACTCCACATTTCCTCCTCC---------------------------------- | 19 | 1 | - | - | - | |
| ----------------------------------------------------------------ACTCCACATTTCCTCCTCCA--------------------------------- | 20 | 1 | - | - | - | |
| ------------------------------------------------------------------TCCACATTTCCTCCTCCAG-------------------------------- | 19 | - | - | - | 1 | |
| rat | ggctgataggtttgggttaagtcccctcctgctgcaggaggagatttggaggtatcctgagcccACTCCACATTTCCTCCTCCAGgtgtgttccttattccctatgtcctgattgcc | |||||
| ********************************************************************************************************************* | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000025702 ENSRNOG00000032701 Slc6a8 | |||||
| rat | (((...((((...(((.((((......((((....((((((((((.(((((..............))))).)))))))))).)))).......))))..))).....))))...))) | 0.980 -41.36 | ||||
| rat | chromosome:X:159573131:159573247:1 | Same_strand|Intronic_coding|ENSRNOT00000025702|ENSRNOG00000032701 ## ENSRNOG00000032701|protein_coding|Slc6a8|Sodium- and chloride-dependent creatine transporter 1 (CT1) (Creatine transporter 1) (CHOT1) (Solute carrier family 6 member 8). [Source:UniProtKB/Swiss-Prot;Acc:P28570] |
novel_lenNOK_cloningOK_multiarm_5varHIGH_bulgeHIGH (1 loci)
block2551356 [novel_lenNOK_cloningOK_multiarm_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.094 | no | no | 0.37/0.42 | 19/24/0.38 | 0.0 1.1 | 1.2 0.8 | 4 15 | 0 0 | 2 4 | 0 0 | 35 5 | -20 6 | 5arm_loop_3arm 3arm | 3 3 | nd nd | 0.21 0.30 | 4 3 | 26 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------------AUGCAUG---------------- | 12 | novel | ||||
| seed | --------------------------------------------------ACCUAUG-------------------- | 5 | novel | ||||
| seed | ------------------------------------GCAAGUU---------------------------------- | 4 | novel | ||||
| seed | --------------------------------------------------------GCAUGGA-------------- | 3 | novel | ||||
| seed | ------------------------------------------------GUACCUA---------------------- | 1 | novel | ||||
| seed | ---------------------------------------------------CCUAUGC------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S1 | T4S1 | T4S2 | T5S1 | |||
| -----------------------------------------------------TATGCATGGATTACACCAT----- | 19 | - | - | - | 1 | 11 | |
| -------------------------------------------------TACCTATGCATGGATTACAC-------- | 20 | - | - | 1 | - | 4 | |
| -------------------------------------------------------TGCATGGATTACACCATAGT-- | 20 | - | 1 | - | - | 2 | |
| -----------------------------------TGCAAGTTTGTGTGTACCT----------------------- | 19 | - | - | - | - | 3 | |
| -----------------------------------------------TGTACCTATGCATGGATTACAC-------- | 22 | - | - | - | - | 1 | |
| --------------------------------------------------ACCTATGCATGGATTACAC-------- | 19 | - | - | - | - | 1 | |
| -----------------------------------TGCAAGTTTGTGTGTACCTATGCA------------------ | 24 | 1 | - | - | - | - | |
| rat | gaacgaaatgtgccacttgtgtttgcgtgtgtgcatgcaagtttgtgtgTACCTATGCATGGATTACACCATagttc | ||||||
| ***************************************************************************** | |||||||
| --------------------------------------------------------------------------------------- | ENSRNOT00000047326 ENSRNOG00000037286 LOC367336 | ||||||
| rat | ((((....(((.(((........((((((.(((((((((....))))))))).)))))))))...))).....)))) | 0.660 -21.10 | |||||
| rat | chromosome:9:105314574:105314650:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000047326|ENSRNOG00000037286 ## ENSRNOG00000037286|protein_coding|LOC367336| |
novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_randfoldOK_bulgeHIGH (1 loci)
sblock6743 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.30/0.75 | 18/26/0.66 | 2.0 1.0 0.0 2.5 0.0 0.0 | 1.5 2.0 0.0 2.7 0.0 0.3 | 2 2 1 11 1 6 | 0 0 0 0 0 0 | 2 1 1 6 1 1 | 0 0 0 0 0 0 | 0 19 34 47 18 5 | 35 17 6 -20 16 29 | 5arm 5arm 5arm 5arm_loop_3arm 3arm 3arm | 1 2 2 2 2 2 | nd nd nd nd nd nd | 0.37 0.39 0.33 0.30 0.40 0.32 | 3 3 5 4 3 3 | 38 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------------------ACACUUG----------------------------------------------------- | 7 | novel | |||||
| seed | --------------------------------------------------------------------------------------------GACCCAU----------------- | 7 | novel | |||||
| seed | ------------------------------------------------UCCUCAA------------------------------------------------------------- | 5 | novel | |||||
| seed | -----------------------------------------------------AAAACAC-------------------------------------------------------- | 4 | novel | |||||
| seed | ---------------------------------------------------UCAAAAC---------------------------------------------------------- | 4 | novel | |||||
| seed | -------------------------------------------------CCUCAAA------------------------------------------------------------ | 2 | novel | |||||
| seed | -----ACAGGUC-------------------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ----------------------GCCGGGU--------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -GCUUACA------------------------------------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | ---------------------------------------------AUUUCCU---------------------------------------------------------------- | 1 | novel | |||||
| seed | --------------------CUGCCGG----------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------------------------------CCAGGCA------------------------------ | 1 | novel | |||||
| seed | ----------------------------------------------------CAAAACA--------------------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------------ACUUGUU--------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------AGCUCCA-------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T4S1 | T4S2 | T5S1 | |||
| -------------------------------------------------------AACACTTGTTTCTCTGCAGGAAG-------------------------------------- | 23 | - | - | - | - | 1 | 5 | |
| -------------------------------------------------------------------------------------------TGACCCATGAGGAGAGCAC------ | 19 | - | - | - | - | - | 4 | |
| -----------------------------------------------TTCCTCAAAACACTTGTTTCTCT---------------------------------------------- | 23 | - | - | - | 1 | - | 2 | |
| --------------------------------------------------CTCAAAACACTTGTTTCTCTG--------------------------------------------- | 21 | 1 | 1 | - | - | - | 1 | |
| ----------------------------------------------------CAAAACACTTGTTTCTCTGCAGGAAG-------------------------------------- | 26 | - | - | - | - | - | 2 | |
| -------------------------------------------------------------------------------------------TGACCCATGAGGAGAGCACG----- | 20 | - | - | - | - | - | 2 | |
| ----------------------------------------------------CAAAACACTTGTTTCTCTG--------------------------------------------- | 19 | - | - | - | 2 | - | - | |
| ----TACAGGTCCAGCTCTTCTG--------------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| ----------------------------------GAGCTCCAAATATTTCCT---------------------------------------------------------------- | 18 | - | - | - | - | - | 1 | |
| --------------------------------------------------CTCAAAACACTTGTTTCTCT---------------------------------------------- | 20 | - | - | - | - | - | 1 | |
| -----------------------------------------------TTCCTCAAAACACTTGTTT-------------------------------------------------- | 19 | - | - | 1 | - | - | - | |
| -------------------TCTGCCGGGTCTGTGGAG------------------------------------------------------------------------------- | 18 | - | - | - | - | - | 1 | |
| TGCTTACAGGTCCAGCTCTT------------------------------------------------------------------------------------------------ | 20 | 1 | - | - | - | - | - | |
| -------------------------------------------------------------------------------------------TGACCCATGAGGAGAGCACGTGAC- | 24 | - | - | - | - | - | 1 | |
| -------------------------------------------------------AACACTTGTTTCTCTGCAGGAAGC------------------------------------- | 24 | - | - | - | - | - | 1 | |
| ------------------------------------------------TCCTCAAAACACTTGTTTCTCTG--------------------------------------------- | 23 | - | - | - | - | - | 1 | |
| ---------------------------------------------------TCAAAACACTTGTTTCTCTG--------------------------------------------- | 20 | - | - | - | - | - | 1 | |
| ---------------------------------------------------------CACTTGTTTCTCTGCAGGA---------------------------------------- | 19 | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------------------CCCAGGCAGCCCCTGACCCA------------------ | 20 | - | - | - | - | - | 1 | |
| ---------------------TGCCGGGTCTGTGGAGCTCC--------------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | |
| -----------------------------------------------TTCCTCAAAACACTTGTTTCTCTG--------------------------------------------- | 24 | - | - | - | - | - | 1 | |
| --------------------------------------------TATTTCCTCAAAACACTTGT---------------------------------------------------- | 20 | - | - | - | - | - | 1 | |
| ------------------------------------------------TCCTCAAAACACTTGTTTCTCT---------------------------------------------- | 22 | - | - | - | - | - | 1 | |
| rat | tgcttacaggtccagctcttctgccgggtctgtggagctccaaatatTTCCTCAAAACACTTGTTTCTCTGCAGGAAGcccaggcagccccTGACCCATGAGGAGAGCACGtgacc | |||||||
| ******************************************************************************************************************** | ||||||||
| rat | ........((((..((((((((...(((((...((.(((((.....((((((((((((....))))...)).))))))....)).))).)).)))))...))))))))....)))) | 0.750 -40.00 | ||||||
| rat | chromosome:20:5518350:5518465:-1 | intergenic |
sblock6173 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.37/0.61 | 18/23/0.57 | 0.0 4.5 0.0 0.0 | 0.0 2.3 0.0 0.0 | 1 11 4 1 | 0 0 0 0 | 1 2 3 1 | 0 0 0 0 | 34 44 33 8 | -3 -20 1 28 | 5arm_loop 3arm_loop 3arm 3arm | 2 2 2 2 | nd nd nd nd | 0.47 0.68 0.35 0.39 | 4 8 4 5 | 23 | 4 | 4 | 5 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------------CCUUUGU--------------------------------------------- | 6 | novel | |||
| seed | -------------------------------------------------------CCUGUUG------------------------------------------------------- | 4 | novel | |||
| seed | ----------------------------------------------------UUGCCUG---------------------------------------------------------- | 4 | novel | |||
| seed | ------------------------------------------------UGUCUUG-------------------------------------------------------------- | 2 | novel | |||
| seed | -----------------------------------AGAGUUU--------------------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------------------UUUGUCG------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------UCGCUCU--------------------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------------------------------CUGCAGU---------------------------------- | 1 | miR-17/20b | |||
| seed | -----------------------------------------------------UGCCUGU--------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------------------------------------------GGGAGAG------------------ | 1 | novel | |||
| seed | --------------------------------------------------------------UCACCUU------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T3S1 | T3S2 | T4S1 | |||
| ----------------------------------------------------------------ACCTTTGTCGCTCTGCAGTC--------------------------------- | 20 | 4 | - | - | - | |
| ------------------------------------------------------GCCTGTTGTCACCTTTGTC-------------------------------------------- | 19 | 2 | 2 | - | - | |
| ---------------------------------------------------CTTGCCTGTTGTCACCTTTGTC-------------------------------------------- | 22 | 2 | 1 | - | - | |
| -----------------------------------------------CTGTCTTGCCTGTTGTCACCTTT----------------------------------------------- | 23 | - | 2 | - | - | |
| ----------------------------------------------------------------ACCTTTGTCGCTCTGCAG----------------------------------- | 18 | 1 | 1 | - | - | |
| ------------------------------------------------------------------CTTTGTCGCTCTGCAGTCTTA------------------------------ | 21 | - | 1 | - | - | |
| ----------------------------------AAGAGTTTCTAAGCTGTCT---------------------------------------------------------------- | 19 | - | 1 | - | - | |
| ----------------------------------------------------TTGCCTGTTGTCACCTTTGTC-------------------------------------------- | 21 | - | 1 | - | - | |
| -------------------------------------------------------------GTCACCTTTGTCGCTCTGCA------------------------------------ | 20 | - | - | - | 1 | |
| -------------------------------------------------------------------------------------------TGGGAGAGCCGGGGAAAA-------- | 18 | - | - | 1 | - | |
| ---------------------------------------------------CTTGCCTGTTGTCACCTT------------------------------------------------ | 18 | - | 1 | - | - | |
| ---------------------------------------------------------------------------TCTGCAGTCTTATGGCTGG----------------------- | 19 | - | 1 | - | - | |
| ----------------------------------------------------------------------GTCGCTCTGCAGTCTTATGGC-------------------------- | 21 | - | 1 | - | - | |
| rat | gcgctctcccctggcatttctggtatgagaaagtaagagtttctaagCTGTCTTGCCTGTTGTCACCTTTGTCGCTCTGCAGTCttatggctgggagagccggggaaaaagggagtg | |||||
| ********************************************************************************************************************* | ||||||
| >>>>>>>>>>>>>>>>>>............................................................................................................. | ENSRNOT00000052568 ENSRNOG00000034445 U1 | |||||
| rat | .((((((((((((((.((((..((((((((..((.(((((....(((.((.............)).)))....)))))))..)))))).))..)))).))))))).....))))))) | 0.710 -42.82 | ||||
| rat | chromosome:2:191182809:191182925:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_mirtron (1 loci)
sblock6906 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.254 | no | no | 0.55/0.59 | 18/23/0.60 | 0.0 1.3 | 1.0 1.7 | 3 7 | 0 0 | 1 3 | 0 0 | 11 15 | 14 5 | 5arm 3arm | 2 2 | 46 1 | 0.32 0.05 | 3 1 | 10 | 3 | -7 | 0 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------CACCCUG------------------------------ | 4 | novel | ||
| seed | ------------GGUGAUG-------------------------------------------------------------------------- | 3 | novel | ||
| seed | ----------------------------------------------------------CCCUGUC---------------------------- | 2 | miR-339 | ||
| seed | ---------------------------------------------------------ACCCUGU----------------------------- | 1 | miR-10a | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T5S2 | |||
| ---------------------------------------------------------ACCCTGTCTGTGCTCTTCCCA--------------- | 21 | 2 | - | - | |
| -----------TGGTGATGGGCAGTCAGTC--------------------------------------------------------------- | 19 | 2 | - | - | |
| --------------------------------------------------------CACCCTGTCTGTGCTCTTC------------------ | 19 | 1 | - | - | |
| -------------------------------------------------------TCACCCTGTCTGTGCTCTTC------------------ | 20 | - | 1 | - | |
| -------------------------------------------------------TCACCCTGTCTGTGCTCT-------------------- | 18 | - | - | 1 | |
| -----------TGGTGATGGGCAGTCAGTCAGC------------------------------------------------------------ | 22 | 1 | - | - | |
| -------------------------------------------------------TCACCCTGTCTGTGCTCTTCCC---------------- | 22 | 1 | - | - | |
| -------------------------------------------------------TCACCCTGTCTGTGCTCTTCCCA--------------- | 23 | - | - | 1 | |
| rat | ggagagcagccTGGTGATGGGCAGTCAGTCAGCggggagctgctttgtgataaagTCACCCTGTCTGTGCTCTTCCCAggagggacctcgccg | ||||
| ********************************************************************************************* | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>> | ENSRNOT00000031134 ENSRNOG00000024011 Ank3 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>> | ENSRNOT00000045622 ENSRNOG00000024011 Ank3 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>> | ENSRNOT00000045781 ENSRNOG00000024011 Ank3 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>> | ENSRNOT00000017790 ENSRNOG00000024011 Ank3 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>> | ENSRNOT00000000765 ENSRNOG00000024011 Ank3 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>> | ENSRNOT00000040256 ENSRNOG00000024011 Ank3 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>> | ENSRNOT00000043215 ENSRNOG00000024011 Ank3 | ||||
| rat | ((.(((...(((((.((.(((((..(((...((((((....((((((...))))))..)))))))))))))).)))))))......))).)). | 0.620 -34.80 | |||
| rat | chromosome:20:19383387:19383479:-1 | Same_strand|Intronic_coding|ENSRNOT00000043215|ENSRNOG00000024011 ## ENSRNOG00000024011|protein_coding|Ank3|ankyrin 3, epithelial isoform 1 [Source:RefSeq_peptide;Acc:NP_113993] |
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_bulgeHIGH (1 loci)
sblock5148 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.558 | no | no | 0.47/0.78 | 18/24/0.58 | 0.0 0.0 0.0 1.2 2.2 | 0.0 0.0 0.0 1.5 4.2 | 1 1 1 4 5 | 0 0 0 0 0 | 1 1 1 4 3 | 0 0 0 0 0 | 8 16 46 21 8 | 18 9 -19 -14 -3 | 5arm 5arm loop 3arm_loop 3arm | 16 16 22 22 22 | nd nd nd nd nd | 0.50 0.90 0.95 0.53 0.26 | 10 19 18 10 4 | 12 | 7 | 0 | 0 |
| reads | miRBase family seed | ||||||||
| seed | ---------------------------------------------------------------UCGCAGC------------------------ | 2 | novel | ||||||
| seed | -----------------------------------------------------GUCUCUC---------------------------------- | 2 | novel | ||||||
| seed | -----------------GGACUCC---------------------------------------------------------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------CUCUCCA-------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------------UUACAAG---------------------------------------- | 1 | novel | ||||||
| seed | ---------AGACCCG------------------------------------------------------------------------------ | 1 | novel | ||||||
| seed | ---------------------------------------------------------------------CCUCCGG------------------ | 1 | novel | ||||||
| seed | ------------------------------------------------------------------CAGCCUC--------------------- | 1 | novel | ||||||
| seed | ----------------------------------------------------AGUCUCU----------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------------------------------GCAGCCU---------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T5S1 | |||
| ----------------------------------------------------AGTCTCTCCAGTCGCAGCCTC--------------------- | 21 | 1 | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------CGCAGCCTCCGGGACCATCTC--------- | 21 | - | - | - | 1 | - | - | - | |
| --------------------------------------------------------------GTCGCAGCCTCCGGGACCATCTCC-------- | 24 | - | - | - | - | 1 | - | - | |
| ---------------------------------------------------AAGTCTCTCCAGTCGCAGCC----------------------- | 20 | - | 1 | - | - | - | - | - | |
| ----------------GGGACTCCCACTTTATTCACT--------------------------------------------------------- | 21 | - | 1 | - | - | - | - | - | |
| ----------------------------------------------CTTACAAGTCTCTCCAGTC----------------------------- | 19 | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------TCTCTCCAGTCGCAGCCTC--------------------- | 19 | - | - | 1 | - | - | - | - | |
| --------CAGACCCGGGGACTCCCACT------------------------------------------------------------------ | 20 | - | - | 1 | - | - | - | - | |
| -----------------------------------------------------------------GCAGCCTCCGGGACCATCT---------- | 19 | - | 1 | - | - | - | - | - | |
| --------------------------------------------------------------GTCGCAGCCTCCGGGACC-------------- | 18 | - | - | - | - | 1 | - | - | |
| --------------------------------------------------------------------GCCTCCGGGACCATCTCC-------- | 18 | - | 1 | - | - | - | - | - | |
| rat | ggacggaaCAGACCCGGGGACTCCCACTTTATTCACTtccagctgcCTTACAAGTCTCTCCAGTCGCAGCCTCCGGGACCATCTCCttgccgcc | ||||||||
| ********************************************************************************************** | |||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000048298 ENSRNOG00000018804 RGD1306939 | ||||||||
| rat | ((.(((...((((((((((......................(((((...................))))))))))))....))).....))))) | 0.490 -20.95 | |||||||
| rat | chromosome:17:47394982:47395075:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000025440|ENSRNOG00000018804 ## Same_strand|Intronic_coding|ENSRNOT00000048298|ENSRNOG00000018804 ## ENSRNOG00000018804|protein_coding|RGD1306939|similar to mKIAA0386 protein (RGD1306939), mRNA [Source:RefSeq_dna;Acc:NM_001014009] |
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