other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_bulgeHIGH (1 loci)
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_randfoldOK_nonpairedHIGH (1 loci)
sblock424 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.42/0.59 | 18/24/0.60 | 0.0 0.0 1.4 | 0.2 0.0 0.2 | 4 1 5 | 0 0 0 | 1 1 2 | 0 0 0 | 4 28 15 | 17 -2 4 | 5arm 3arm_loop 3arm | 24 51 51 | nd nd nd | 0.36 0.50 0.53 | 3 5 5 | 10 | 2 | -8 | -13 |
| reads | miRBase family seed | |||
| seed | -----CCAGUGU-------------------------------------------------------------------------------- | 4 | miR-199a | |
| seed | -----------------------------------------------------------GGACCUU-------------------------- | 3 | novel | |
| seed | -----------------------------------------------------GUCAUAG-------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------AGGACCU--------------------------- | 1 | novel | |
| seed | -----------------------------------------------UCCAGUG-------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----------------------------------------------------------AGGACCTTCTCACTAACAG--------------- | 19 | - | 3 | |
| ----TCCAGTGTGGCTTCTGTCCCAGT----------------------------------------------------------------- | 23 | - | 3 | |
| ----------------------------------------------------TGTCATAGGACCTTCTCACTAACA---------------- | 24 | - | 1 | |
| ---------------------------------------------------------TAGGACCTTCTCACTAACAG--------------- | 20 | 1 | - | |
| ----------------------------------------------CTCCAGTGTCATAGGACC---------------------------- | 18 | - | 1 | |
| ----TCCAGTGTGGCTTCTGTCCCAG------------------------------------------------------------------ | 22 | - | 1 | |
| rat | ctgtTCCAGTGTGGCTTCTGTCCCAGTacctccactatcactggacCTCCAGTGTCATAGGACCTTCTCACTAACAGcggctgcattgtcag | |||
| ******************************************************************************************** | ||||
| ------------------------------------------------------------------------------------------------------ | ENSRNOT00000044862 ENSRNOG00000032704 | |||
| rat | (((...(((((..(((.((((...((....(((.....((((((....)))))).....)))....)).....)))).)))..))))).))) | 0.980 -30.90 | ||
| rat | chromosome:1:51348812:51348903:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000044862|ENSRNOG00000032704 ## ENSRNOG00000032704|protein_coding|| |
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_mirtron (1 loci)
sblock3451 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.362 | no | no | 0.44/0.79 | 18/20/0.25 | 0.7 0.0 0.0 1.0 0.5 0.0 | 0.0 0.3 0.0 1.0 1.0 0.0 | 3 3 1 2 2 1 | 0 0 0 0 0 0 | 2 2 1 2 2 1 | 0 0 0 0 0 0 | 15 21 26 17 8 2 | -1 -7 -3 4 13 20 | 5arm_loop 5arm_loop_3arm 3arm_loop 3arm 3arm 3arm | 13 17 35 35 35 35 | 19 13 0 7 16 24 | 0.25 0.42 0.50 0.44 0.26 0.26 | 2 5 5 5 2 2 | 12 | 4 | 0 | 1 |
| reads | miRBase family seed | |||||
| seed | ----------------------UCACAGC--------------------------------------------------- | 3 | miR-673 | |||
| seed | ----------------CCGCUCU--------------------------------------------------------- | 2 | novel | |||
| seed | ------------------------------------------------------------CGCCGGG------------- | 1 | novel | |||
| seed | ----------------------------------------------CUCCAUA--------------------------- | 1 | novel | |||
| seed | -------------------------------------UACAUUG------------------------------------ | 1 | novel | |||
| seed | ------------------GCUCUCA------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------GAGACAG-------------------- | 1 | novel | |||
| seed | --------------------------------------------AGCUCCA----------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------AGACAGC------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T3S1 | T3S2 | |||
| ---------------------CTCACAGCCATTGCAGTAC---------------------------------------- | 19 | - | - | - | 2 | |
| ---------------CCCGCTCTCACAGCCATTGC--------------------------------------------- | 20 | 1 | 1 | - | - | |
| ---------------------CTCACAGCCATTGCAGTACA--------------------------------------- | 20 | - | - | 1 | - | |
| ----------------------------------------------------AGAGACAGCGCCGGGGCA---------- | 18 | - | - | 1 | - | |
| ---------------------------------------------GCTCCATAGAGACAGCGC----------------- | 18 | - | - | - | 1 | |
| -----------------------------------------------------GAGACAGCGCCGGGGCAAG-------- | 19 | 1 | - | - | - | |
| ------------------------------------GTACATTGAGCTCCATAG-------------------------- | 18 | - | - | 1 | - | |
| -----------------CGCTCTCACAGCCATTGC--------------------------------------------- | 18 | - | 1 | - | - | |
| -----------------------------------------------------------GCGCCGGGGCAAGCGAGAG-- | 19 | - | - | 1 | - | |
| -------------------------------------------GAGCTCCATAGAGACAGC------------------- | 18 | - | - | 1 | - | |
| rat | aggctgcgtctggctCCCGCTCTCACAGCCATTGCAGTACATTGAGCTCCATAGAGACAGCGCCGGGGCAAGCGAGAGcc | |||||
| ******************************************************************************** | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000047163 ENSRNOG00000029813 Q7TPK9_RAT | |||||
| rat | .((((.((.((.((((((((((((..(((((.((.....)).)).))).....))))..)))..))))).))))..)))) | 0.970 -26.40 | ||||
| rat | chromosome:12:6475663:6475742:1 | Same_strand|Intronic_coding|ENSRNOT00000047163|ENSRNOG00000029813 ## Same_strand|Boundary_coding|ENSRNOT00000047163|ENSRNOG00000029813 ## ENSRNOG00000029813|protein_coding|Q7TPK9_RAT|Ac2-008. [Source:UniProtKB/TrEMBL;Acc:Q7TPK9] |
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_nonpairedHIGH_bulgeHIGH (1 loci)
block421584 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.018 | no | no | 0.39/0.44 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 36 7 | 0 0 | 2 2 | 0 0 | 10 16 | 34 19 | 5arm 3arm | 13 13 | nd nd | 0.39 0.53 | 4 5 | 44 | 2 | 0 | -3 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------------------------CCUUACA-------------------------- | 18 | novel | |
| seed | -----------CCUUACA------------------------------------------------------------------------------------------------------ | 18 | novel | |
| seed | --------------------------------------------------------------------------------------GCCUUAC--------------------------- | 8 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ----------GCCTTACATATTGTGGAT-------------------------------------------------------------------------------------------- | 18 | 13 | 5 | |
| --------------------------------------------------------------------------------------GCCTTACATATTGTGGAT---------------- | 18 | 13 | 5 | |
| -------------------------------------------------------------------------------------GGCCTTACATATTGTGGAT---------------- | 19 | 5 | 2 | |
| -------------------------------------------------------------------------------------GGCCTTACATATTGTGGA----------------- | 18 | 1 | - | |
| rat | gcgcaggtcaGCCTTACATATTGTGGATaaccgggcaactgcgcaggcaggccgtactgcggataaccgggcaactgcgcaggccGGCCTTACATATTGTGGATaaccgggcaactgcgc | |||
| ************************************************************************************************************************ | ||||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000012750 ENSRNOG00000009281 Commd1 | |||
| rat | ((((((....((((..((((.((((.....((((....((((((((....(((......(((....))))))..)))))))).)))).....)))).)))).......))))..)))))) | 0.810 -49.30 | ||
| rat | chromosome:14:103656620:103656739:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000056897|ENSRNOG00000009281 ## Opposite_strand|Intronic_coding|ENSRNOT00000012750|ENSRNOG00000009281 ## ENSRNOG00000009281|protein_coding|Commd1|COMM domain containing 1 Gene [Source:MGI (curated);Acc:Commd1-001] ## {Repeats: trf 893 912 0 class=trf} |
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_shortStem_5varHIGH_loopOverlap_randfoldOK (1 loci)
sblock11337 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_shortStem_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.09/0.72 | 18/23/0.31 | 0.0 3.0 4.6 | 0.0 1.5 4.5 | 1 2 13 | 0 0 0 | 1 1 5 | 0 0 0 | 0 24 0 | 5 -13 -1 | 5arm 3arm_loop 3arm | 1 257 257 | nd nd nd | 0.22 0.47 0.47 | 3 6 6 | 16 | 6 | 1 | -3 |
| reads | miRBase family seed | |||||||
| seed | -------------------------------------------UUUGGUU---------------------- | 5 | novel | |||||
| seed | ------------------------------------UUUUGUU----------------------------- | 3 | novel | |||||
| seed | --------------------------------------------------UUUUUUU--------------- | 2 | novel | |||||
| seed | ------------------------------------------------------UUUUUGG----------- | 1 | novel | |||||
| seed | -CCCACCC---------------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------------UUUUUUU-------------- | 1 | novel | |||||
| seed | ------------------------------UUUUGUU----------------------------------- | 1 | novel | |||||
| seed | ------------------------UUUUUUU----------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------UUUUUUU---------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T3S1 | T3S2 | T4S2 | T5S2 | |||
| ------------------------------------------TTTTGGTTTTTTTTTTTGG----------- | 19 | - | - | - | 1 | 2 | - | |
| -----------------------------------TTTTTGTTTTTGGTTTTTTTTTT-------------- | 23 | 1 | - | - | - | 1 | - | |
| -------------------------------------------------TTTTTTTTTTGGGGGGGGG---- | 19 | - | - | 2 | - | - | - | |
| -----------------------------TTTTTGTTTTTGTTTTTGG------------------------ | 19 | 1 | - | - | - | - | - | |
| CCCCACCCCTGCCGGTTT------------------------------------------------------ | 18 | - | 1 | - | - | - | - | |
| --------------------------------------------------TTTTTTTTTGGGGGGGGGA--- | 19 | 1 | - | - | - | - | - | |
| ------------------------------------------TTTTGGTTTTTTTTTTTGGGGGG------- | 23 | - | - | - | - | - | 1 | |
| -----------------------TTTTTTTTTTTGTTTTTGTTTT--------------------------- | 22 | 1 | - | - | - | - | - | |
| ------------------------------------------TTTTGGTTTTTTTTTTTGGGGG-------- | 22 | 1 | - | - | - | - | - | |
| -----------------------------------TTTTTGTTTTTGGTTTTTT------------------ | 19 | 1 | - | - | - | - | - | |
| -----------------------------------------------------TTTTTTGGGGGGGGGACAA | 19 | - | - | - | 1 | - | - | |
| ------------------------------------------------TTTTTTTTTTTGGGGGGGG----- | 19 | 1 | - | - | - | - | - | |
| rat | CCCCACCCCTGCCGGTTTtggggTTTTTTTTTTTGTTTTTGTTTTTGGTTTTTTTTTTTGGGGGGGGGACAA | |||||||
| ************************************************************************ | ||||||||
| rat | ((((.((((((((((...(((((.............)))))...)))))..........))))))))).... | 0.890 -17.82 | ||||||
| rat | chromosome:7:98961338:98961409:1 | intergenic ## {Repeats: trf 1 36 0 class=trf,trf 1 39 0 class=trf,trf 1 38 0 class=trf,(TTTTTG)n 1 37 1 class=Simple_repeat,dust 98961361 98961396 0 class=dust} |
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_shortStem_nonpairedHIGH (1 loci)
sblock1393 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.021 | no | no | 0.43/0.53 | 18/21/0.30 | 0.2 0.0 | 0.5 0.0 | 21 1 | 0 0 | 4 1 | 0 0 | 0 6 | 9 6 | 5arm 3arm | 18 18 | nd nd | 0.37 0.53 | 3 4 | 30 | 5 | -2 | -3 |
| reads | miRBase family seed | ||||||
| seed | -UCCAAAC---------------------------------------------------------- | 19 | novel | ||||
| seed | --CCAAACU--------------------------------------------------------- | 10 | novel | ||||
| seed | ------------------------------------------CUUACAC----------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T5S1 | T5S2 | |||
| ATCCAAACTATGGGCTGAC----------------------------------------------- | 19 | - | 1 | - | 10 | 1 | |
| ATCCAAACTATGGGCTGACA---------------------------------------------- | 20 | - | - | - | 7 | - | |
| -TCCAAACTATGGGCTGACA---------------------------------------------- | 19 | 1 | - | - | 4 | - | |
| -TCCAAACTATGGGCTGAC----------------------------------------------- | 18 | - | 2 | - | 1 | - | |
| -TCCAAACTATGGGCTGACATT-------------------------------------------- | 21 | 2 | - | - | - | - | |
| -----------------------------------------TCTTACACCCCACAGTGAG------ | 19 | - | - | 1 | - | - | |
| rat | ATCCAAACTATGGGCTGACAttaagaggttaagctgcctcttcttacaccccacagtgagcagggt | ||||||
| ****************************************************************** | |||||||
| rat | ((((..(((.((((.((.....(((((((......)))))))....)).)))).))).....)))) | 1.000 -19.80 | |||||
| rat | chromosome:1:51023697:51023762:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_bulgeHIGH (1 loci)
sblock12567 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.046 | no | no | 0.30/0.39 | 18/21/0.31 | 0.0 0.0 1.4 | 0.5 0.0 1.0 | 2 2 9 | 0 0 0 | 1 1 2 | 0 0 0 | 8 30 3 | 5 -15 7 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.25 0.39 0.37 | 4 4 4 | 13 | 2 | 4 | 6 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------GACAAGU--------------- | 4 | novel | |
| seed | -----------------------------------------------------ACAAGUA-------------- | 2 | novel | |
| seed | ---------UAUGAUA---------------------------------------------------------- | 2 | novel | |
| seed | --------------------------------------------------AUGACAA----------------- | 2 | novel | |
| seed | -------------------------------AGGACAC------------------------------------ | 2 | novel | |
| seed | ---------------------------------------------CAGUUAU---------------------- | 1 | miR-101a* | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------------TGACAAGTAAGTGTATGAT---- | 19 | 1 | 3 | |
| ----------------------------------------------------GACAAGTAAGTGTATGATA--- | 19 | - | 2 | |
| -------------------------------------------------TATGACAAGTAAGTGTATGA----- | 20 | - | 2 | |
| ------------------------------TAGGACACTTTCAATCAG-------------------------- | 18 | - | 2 | |
| --------TTATGATATTGTCAACTGCA---------------------------------------------- | 20 | - | 1 | |
| --------TTATGATATTGTCAACTGC----------------------------------------------- | 19 | - | 1 | |
| --------------------------------------------TCAGTTATGACAAGTAAGTGT--------- | 21 | - | 1 | |
| rat | aatatctaTTATGATATTGTCAACTGCAttTAGGACACTTTCAATCAGTTATGACAAGTAAGTGTATGATAttc | |||
| ************************************************************************** | ||||
| rat | ((((((...(((....((((((((((.(((.((....))...)))))))..))))))....)))...)))))). | 0.990 -14.40 | ||
| rat | chromosome:9:105071880:105071953:1 | intergenic |
block1094189 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.456 | no | no | 0.39/0.63 | 18/24/0.62 | 0.0 8.5 | 1.7 9.2 | 7 12 | 0 0 | 1 4 | 0 0 | 4 4 | 7 -4 | 5arm 3arm | 1 1 | nd nd | 0.65 0.37 | 8 4 | 39 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | -----GGCAGUC---------------------------------------------------- | 8 | novel | |||
| seed | ------------------GCUCCUU--------------------------------------- | 6 | novel | |||
| seed | ------------------------------------------CUGACCU--------------- | 5 | novel | |||
| seed | ------------------------------------GUGGAUC--------------------- | 4 | novel | |||
| seed | ------------------------UAACGUC--------------------------------- | 3 | novel | |||
| seed | ---------------------CCUUAAC------------------------------------ | 3 | novel | |||
| seed | -------------------------AACGUCA-------------------------------- | 2 | novel | |||
| seed | ------------------------------CAUUCUG--------------------------- | 1 | novel | |||
| seed | ----------------GUGCUCC----------------------------------------- | 1 | novel | |||
| seed | ----------------------CUUAACG----------------------------------- | 1 | novel | |||
| seed | --------------------------ACGUCAU------------------------------- | 1 | miR-598 | |||
| seed | -----------------UGCUCCU---------------------------------------- | 1 | novel | |||
| seed | -------------------CUCCUUA-------------------------------------- | 1 | novel | |||
| seed | --------------CUGUGCU------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------GACCUGC------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| -----------------------------------------TCTGACCTGCTTTTCTGCT---- | 19 | 1 | - | - | 3 | |
| ----TGGCAGTCACCTGTGCTCCTTAAC------------------------------------ | 24 | - | - | - | 4 | |
| -----------------------------------TGTGGATCTGACCTGCTTTTCTG------ | 23 | - | - | - | 4 | |
| ----TGGCAGTCACCTGTGCTCCT---------------------------------------- | 20 | - | - | - | 3 | |
| -----------------TGCTCCTTAACGTCATTCT---------------------------- | 19 | - | - | - | 3 | |
| -----------------TGCTCCTTAACGTCATTCTGTG------------------------- | 22 | - | 1 | - | 1 | |
| --------------------TCCTTAACGTCATTCTGTG------------------------- | 19 | - | - | - | 2 | |
| -----------------------TTAACGTCATTCTGTGGATCTGA------------------ | 23 | - | - | - | 1 | |
| ------------------------TAACGTCATTCTGTGGATCT-------------------- | 20 | - | - | - | 1 | |
| -----------------------TTAACGTCATTCTGTGGATCTG------------------- | 22 | - | - | - | 1 | |
| -------------CCTGTGCTCCTTAACGTCA-------------------------------- | 19 | - | - | - | 1 | |
| -----------------------------TCATTCTGTGGATCTGACCTGC------------- | 22 | - | - | - | 1 | |
| -----------------------TTAACGTCATTCTGTGGA----------------------- | 18 | - | - | - | 1 | |
| --------------------TCCTTAACGTCATTCTGTGGAT---------------------- | 22 | - | - | - | 1 | |
| -----------------------------------------TCTGACCTGCTTTTCTGCTAG-- | 21 | - | - | - | 1 | |
| ----------------GTGCTCCTTAACGTCATTCT---------------------------- | 20 | - | - | - | 1 | |
| ------------------GCTCCTTAACGTCATTCTG--------------------------- | 19 | - | - | 1 | - | |
| ----TGGCAGTCACCTGTGCTCC----------------------------------------- | 19 | - | - | - | 1 | |
| ------------------------TAACGTCATTCTGTGGATCTG------------------- | 21 | - | - | - | 1 | |
| ---------------------CCTTAACGTCATTCTGTGGA----------------------- | 20 | - | - | - | 1 | |
| ---------------TGTGCTCCTTAACGTCATTCTGT-------------------------- | 23 | - | - | 1 | - | |
| -------------------------AACGTCATTCTGTGGATCTGAC----------------- | 22 | - | - | - | 1 | |
| -----------------TGCTCCTTAACGTCATTC----------------------------- | 18 | - | - | - | 1 | |
| -------------------------------------------TGACCTGCTTTTCTGCTAG-- | 19 | - | - | - | 1 | |
| rat | gcctTGGCAGTCACCTGTGCTCCTTAACGTCATTCTGTGGATCTGACCTGCTTTTCTGCTaggc | |||||
| **************************************************************** | ||||||
| rat | (((.((((((........((........((((.((....))..))))..))....))))))))) | 0.480 -13.10 | ||||
| rat | chromosome:20:5562628:5562691:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_bulgeHIGH (1 loci)
sblock10317 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.579 | no | no | 0.67/0.78 | 18/21/0.35 | 0.0 0.0 0.0 | 0.4 0.0 0.0 | 14 1 1 | 0 0 0 | 7 1 1 | 0 0 0 | 0 43 4 | 25 -16 15 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.30 0.44 0.28 | 4 6 4 | 26 | 9 | -4 | -9 |
| reads | miRBase family seed | ||||||||||
| seed | -CUCUCCC-------------------------------------------------------------------------------- | 24 | novel | ||||||||
| seed | -------------------------------------------------------------------GCGUGGC-------------- | 1 | novel | ||||||||
| seed | --------------------------------------------GCCGUUC------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ACTCTCCCGAGCCTCCGCC--------------------------------------------------------------------- | 19 | 5 | 2 | - | - | 2 | - | - | 1 | 1 | |
| ACTCTCCCGAGCCTCCGCCA-------------------------------------------------------------------- | 20 | 3 | 1 | - | - | 1 | 1 | - | - | 1 | |
| ACTCTCCCGAGCCTCCGC---------------------------------------------------------------------- | 18 | 2 | - | - | - | 1 | - | - | 1 | - | |
| ACTCTCCCGAGCCTCCGCCAG------------------------------------------------------------------- | 21 | - | - | - | - | - | - | 1 | 1 | - | |
| ------------------------------------------------------------------GGCGTGGCGGGGTCACCT---- | 18 | - | - | 1 | - | - | - | - | - | - | |
| -------------------------------------------CGCCGTTCCGCCACAGAA--------------------------- | 18 | - | - | - | 1 | - | - | - | - | - | |
| rat | ACTCTCCCGAGCCTCCGCCAgcacaggcttgactggacgccggcgccgttccgccacagaaggccgggcgtggcggggtcacctctgg | ||||||||||
| **************************************************************************************** | |||||||||||
| rat | .....((.(((.((((((((((...(((((..(((......((((......)))).))).)))))..)).))))))))....))).)) | 0.920 -36.50 | |||||||||
| rat | chromosome:6:91772067:91772154:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_loopOverlap (1 loci)
sblock1927 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.034 | no | no | 0.32/0.50 | 19/25/0.50 | 0.0 0.0 0.0 | 0.0 0.0 2.0 | 4 1 5 | 0 0 0 | 1 1 2 | 0 0 0 | 4 16 2 | 0 -11 -3 | 5arm 5arm_loop_3arm 3arm_loop | 1 1 1 | nd nd nd | 0.25 0.58 0.28 | 2 8 3 | 10 | 2 | -3 | 2 |
| reads | miRBase family seed | |||
| seed | ------------------------------ACACAUA------------------- | 5 | novel | |
| seed | -----GACAUGC-------------------------------------------- | 4 | novel | |
| seed | -----------------CUCUUGU-------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----TGACATGCCTGCTCTCTTGT-------------------------------- | 20 | - | 4 | |
| -----------------------------TACACATAGACACTTGTGTGTCCTG-- | 25 | 1 | 2 | |
| -----------------------------TACACATAGACACTTGTGTGT------ | 21 | - | 1 | |
| -----------------------------TACACATAGACACTTGTGT-------- | 19 | - | 1 | |
| ----------------TCTCTTGTTAGAATACACA--------------------- | 19 | - | 1 | |
| rat | agcaTGACATGCCTGCTCTCTTGTtagaaTACACATAGACACTTGTGTGTCCTGct | |||
| ******************************************************** | ||||
| rat | ((((.(((((((.((.(((..(((........))).)))))...))))))).)))) | 0.960 -13.90 | ||
| rat | chromosome:1:128272823:128272878:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_loopOverlap_mirtron (1 loci)
sblock968 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.105 | no | no | 0.60/0.68 | 18/22/0.27 | 0.0 0.3 | 2.0 0.2 | 2 9 | 0 0 | 2 7 | 0 0 | 9 2 | 0 -1 | 5arm 3arm | 1 1 | 31 0 | 0.50 0.24 | 9 3 | 11 | 7 | 2 | 8 |
| reads | miRBase family seed | ||||||||
| seed | ---------------------------------------------GCCUACC-------------- | 8 | novel | ||||||
| seed | ----------CCUGUGA------------------------------------------------- | 2 | novel | ||||||
| seed | ------------------------------------------CAUGCCU----------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------TGCCTACCCTGGCCACAG---- | 18 | - | 1 | 2 | 1 | 1 | 1 | 1 | |
| --------------------------------------------TGCCTACCCTGGCCACAGAT-- | 20 | - | - | - | - | - | 1 | - | |
| -----------------------------------------TCATGCCTACCCTGGCCACAG---- | 21 | 1 | - | - | - | - | - | - | |
| ---------CCCTGTGACTTGGGTGGG--------------------------------------- | 18 | 1 | - | - | - | - | - | - | |
| ---------CCCTGTGACTTGGGTGGGGGTG----------------------------------- | 22 | - | - | - | - | 1 | - | - | |
| rat | ccagagtggCCCTGTGACTTGGGTGGGGGTGcgcgatcttcTCATGCCTACCCTGGCCACAGATgg | ||||||||
| ****************************************************************** | |||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>> | ENSRNOT00000032387 ENSRNOG00000023668 Scyl1 | ||||||||
| rat | (((..((((((.........(((((((.(((...........))).))))))).))))))...))) | 0.980 -26.60 | |||||||
| rat | chromosome:1:208392060:208392125:-1 | Same_strand|Intronic_coding|ENSRNOT00000032387|ENSRNOG00000023668 ## Same_strand|Boundary_coding|ENSRNOT00000032387|ENSRNOG00000023668 ## ENSRNOG00000023668|protein_coding|Scyl1|N-terminal kinase-like protein (SCY1-like protein 1). [Source:UniProtKB/Swiss-Prot;Acc:Q5M9F8] |
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