other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_loopOverlap_mirtron (1 loci)
novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_randfoldOK (1 loci)
sblock655 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.57/0.67 | 18/22/0.63 | 0.0 0.5 | 0.5 0.8 | 4 26 | 0 0 | 2 2 | 0 0 | 4 1 | 6 12 | 5arm 3arm | 1 1 | nd nd | 0.05 0.05 | 1 1 | 41 | 2 | 3 | 4 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------AGCCAGG-------------- | 26 | novel | |
| seed | ------------------------------------------------UCUAGCC----------------- | 8 | novel | |
| seed | -----GUCAGGC------------------------------------------------------------ | 4 | novel | |
| seed | --------------------------------------------------UAGCCAG--------------- | 3 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| --------------------------------------------------TAGCCAGGGGCTTGACTGCA-- | 20 | 8 | 4 | |
| --------------------------------------------------TAGCCAGGGGCTTGACTG---- | 18 | 3 | 2 | |
| --------------------------------------------------TAGCCAGGGGCTTGACTGCAA- | 21 | 4 | 1 | |
| -----------------------------------------------CTCTAGCCAGGGGCTTGACTG---- | 21 | 4 | - | |
| --------------------------------------------------TAGCCAGGGGCTTGACTGC--- | 19 | 3 | - | |
| -------------------------------------------------CTAGCCAGGGGCTTGACTG---- | 19 | 1 | 1 | |
| -----------------------------------------------CTCTAGCCAGGGGCTTGAC------ | 19 | 1 | 1 | |
| ----AGTCAGGCTCCTGGCAGGA------------------------------------------------- | 19 | 2 | - | |
| -------------------------------------------------CTAGCCAGGGGCTTGACTGCA-- | 21 | - | 1 | |
| -----------------------------------------------CTCTAGCCAGGGGCTTGACTGC--- | 22 | - | 1 | |
| ----AGTCAGGCTCCTGGCAGGAG------------------------------------------------ | 20 | 1 | - | |
| -----------------------------------------------CTCTAGCCAGGGGCTTGACT----- | 20 | 1 | - | |
| ----AGTCAGGCTCCTGGCAGG-------------------------------------------------- | 18 | - | 1 | |
| --------------------------------------------------TAGCCAGGGGCTTGACTGCAAG | 22 | 1 | - | |
| rat | tgtcagtcaggctcctggcaggagtccagctctcagctggttccaggCTCTAGCCAGGGGCTTGACTGCAAg | |||
| ************************************************************************ | ||||
| rat | ((.((((((((((((((((.((((((((((.....)))))......))))).)))))))))))))))))).. | 1.000 -46.90 | ||
| rat | chromosome:1:116057441:116057512:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_randfoldOK_nonpairedHIGH (1 loci)
sblock10316 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.28/0.45 | 18/25/0.60 | 0.3 0.0 0.0 | 2.3 0.0 0.0 | 16 3 1 | 0 0 0 | 7 3 1 | 0 0 0 | 3 16 7 | 11 3 17 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.36 0.48 0.50 | 3 5 4 | 20 | 8 | -9 | -9 |
| reads | miRBase family seed | |||||||||
| seed | -----ACUGUGA-------------------------------------------------------------------------- | 11 | novel | |||||||
| seed | ----AACUGUG--------------------------------------------------------------------------- | 5 | novel | |||||||
| seed | ----------------------------------------------ACUAAUG--------------------------------- | 3 | novel | |||||||
| seed | ------------------------------------------------------------CAGUCCC------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ----AACTGTGATGAAAGATTTGGTCT----------------------------------------------------------- | 23 | 1 | - | - | - | - | - | 3 | 2 | |
| ---------------------------------------------TACTAATGAGGACAACAGTCCCTCT---------------- | 25 | - | - | 1 | - | 1 | 1 | - | - | |
| ---CAACTGTGATGAAAGATT----------------------------------------------------------------- | 18 | - | - | - | 2 | - | - | - | - | |
| ----AACTGTGATGAAAGATTT---------------------------------------------------------------- | 18 | - | 1 | - | - | 1 | - | - | - | |
| ---CAACTGTGATGAAAGATTTGGTCT----------------------------------------------------------- | 24 | - | - | - | - | - | - | 1 | - | |
| ----AACTGTGATGAAAGATTTGG-------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | - | |
| ----AACTGTGATGAAAGATTTG--------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | |
| ---CAACTGTGATGAAAGATTTGGT------------------------------------------------------------- | 22 | - | - | - | - | - | - | - | 1 | |
| ----AACTGTGATGAAAGATTTGGT------------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | - | |
| ---CAACTGTGATGAAAGATTTG--------------------------------------------------------------- | 20 | - | - | - | - | 1 | - | - | - | |
| -----------------------------------------------------------ACAGTCCCTCTAAACTGATG------- | 20 | - | - | - | 1 | - | - | - | - | |
| rat | tggCAACTGTGATGAAAGATTTGGTCTatacagtaatatatttatTACTAATGAGGACAACAGTCCCTCTAAACTGATGttgccat | |||||||||
| ************************************************************************************** | ||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000006096 ENSRNOG00000004521 NP_001101496.1 | |||||||||
| rat | (((((((.((...((..((((..((((....(((((((....))))))).....))))...))))..))...))....))))))). | 0.650 -23.40 | ||||||||
| rat | chromosome:6:86405570:86405655:1 | Same_strand|Intronic_non-coding|ENSRNOT00000006096|ENSRNOG00000004521 ## ENSRNOG00000004521|protein_coding|NP_001101496.1|PRP39 pre-mRNA processing factor 39 homolog [Source:RefSeq_peptide;Acc:NP_001101496] |
novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
sblock2671 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.40/0.63 | 18/20/0.04 | 0.0 0.0 | 0.0 0.0 | 12 1 | 0 0 | 7 1 | 0 0 | 4 14 | 16 9 | 5arm 3arm | 1 1 | 52 2 | 0.44 0.53 | 5 10 | 26 | 7 | -10 | -9 |
| reads | miRBase family seed | ||||||||
| seed | -----ACGGGAA-------------------------------------------------------------------------- | 25 | novel | ||||||
| seed | ------------------------------------------------------GAUCUCA------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T4S2 | T5S1 | T5S2 | |||
| ----AACGGGAATGGGGAAAAA---------------------------------------------------------------- | 18 | 12 | 1 | 3 | 1 | 1 | 1 | - | |
| ----AACGGGAATGGGGAAAAAA--------------------------------------------------------------- | 19 | 3 | - | - | - | 1 | - | 1 | |
| -----------------------------------------------------GGATCTCACCTCTCTCCCC-------------- | 19 | - | - | - | - | - | - | 1 | |
| ----AACGGGAATGGGGAAAAAAA-------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | |
| rat | ggggAACGGGAATGGGGAAAAAaatgtccaacatggagaatagctttgatgatggatctcacctctctccccagaacctgggctcc | ||||||||
| ************************************************************************************** | |||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>> | ENSRNOT00000004729 ENSRNOG00000003492 Gas7 | ||||||||
| rat | ((((..((((..((((((.......(((((.(((.(((......))).))).)))))..........))))))...))))..)))) | 0.990 -30.83 | |||||||
| rat | chromosome:10:54370273:54370358:1 | Same_strand|Intronic_coding|ENSRNOT00000004729|ENSRNOG00000003492 ## ENSRNOG00000003492|protein_coding|Gas7|Growth arrest-specific protein 7 (GAS-7). [Source:UniProtKB/Swiss-Prot;Acc:O55148] |
novel_lenNOK_cloningOK_multiarm_DicerOK_5varHIGH (1 loci)
sblock6203 [novel_lenNOK_cloningOK_multiarm_DicerOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.057 | no | no | 0.45/0.53 | 18/26/0.17 | 1.0 0.0 2.2 0.0 | 0.7 0.0 0.5 0.0 | 3 2 6 1 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 10 17 23 24 | 19 15 1 4 | 5arm 5arm 5arm 3arm | 4 4 4 4 | nd nd nd nd | 0.32 0.33 0.41 0.26 | 2 4 4 2 | 12 | 2 | 1 | 3 |
| reads | miRBase family seed | |||
| seed | --------------ACAUGGU--------------------------------------------------------------------------------- | 2 | novel | |
| seed | ------------------GGUUGCC----------------------------------------------------------------------------- | 2 | novel | |
| seed | -----------------------------GGAAUGU------------------------------------------------------------------ | 2 | miR-1/206 | |
| seed | ------------------------------------------------------------CUGGUGG----------------------------------- | 1 | novel | |
| seed | ------------------------CUUCAGG----------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------UUCAGGA---------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------UCAGGAA--------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------GAAUGUA----------------------------------------------------------------- | 1 | novel | |
| seed | -----------GGAACAU------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| -----------------TGGTTGCCTTCAGGAATG------------------------------------------------------------------- | 18 | 2 | - | |
| -------------AACATGGTTGCCTTCAGG----------------------------------------------------------------------- | 18 | 2 | - | |
| ----------------------------AGGAATGTAGTCAACGGTC------------------------------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------ACTGGTGGGATAATGGCAG------------------------ | 19 | - | 1 | |
| -----------------------------GGAATGTAGTCAACGGTC------------------------------------------------------- | 18 | - | 1 | |
| ------------------------CTTCAGGAATGTAGTCAACGGTCA------------------------------------------------------ | 24 | 1 | - | |
| ----------AGGAACATGGTTGCCTTCA------------------------------------------------------------------------- | 19 | 1 | - | |
| -------------------------TTCAGGAATGTAGTCAACGGTC------------------------------------------------------- | 22 | - | 1 | |
| -----------------------CCTTCAGGAATGTAGTCAACGGTCAG----------------------------------------------------- | 26 | 1 | - | |
| rat | ctctgtttttAGGAACATGGTTGCCTTCAGGAATGTAGTCAACGGTCAGccttttgcaaACTGGTGGGATAATGGCAGcaaccaagtggcttttagcagagg | |||
| ****************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000051293 ENSRNOG00000030590 Amy2 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000022268 ENSRNOG00000030590 Amy2 | |||
| rat | (((((((...((..((.(((((((..(((....(((..(((.((((..((.....))..)))).))).))).)))..))))))).))..))...))))))). | 0.420 -31.30 | ||
| rat | chromosome:2:209511763:209511864:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000051293|ENSRNOG00000030590 ## Same_strand|Intronic_coding|ENSRNOT00000022268|ENSRNOG00000030590 ## ENSRNOG00000030590|protein_coding|Amy2|Pancreatic alpha-amylase precursor (EC 3.2.1.1) (PA) (1,4-alpha-D- glucan glucanohydrolase). [Source:UniProtKB/Swiss-Prot;Acc:P00689] |
novel_lenNOK_cloningOK_multiarm_DicerOK_Multihit_nonpairedHIGH_bulgeHIGH (1 loci)
sblock1518 [novel_lenNOK_cloningOK_multiarm_DicerOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.086 | no | no | 0.37/0.58 | 19/20/0.18 | 0.0 3.0 0.0 | 0.5 2.7 0.0 | 2 3 12 | 0 0 0 | 1 2 1 | 0 0 0 | 2 8 17 | 29 17 17 | 5arm 5arm 3arm | 23 27 31 | nd nd nd | 0.37 0.53 0.58 | 4 10 10 | 17 | 2 | 1 | 1 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------CCAAAUU---------------------------- | 12 | novel | |
| seed | ---CUCCACA--------------------------------------------------------------------------------------------------- | 2 | novel | |
| seed | ---------------AGGACCA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------CAAAGGA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------AGUCAAA--------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------------------------------------------------------------------------TCCAAATTGCAAGACCTTT----------------- | 19 | - | 12 | |
| --------------AAGGACCAATATTGTGGTAG--------------------------------------------------------------------------- | 20 | - | 1 | |
| --CCTCCACAGTCAAAGGACC---------------------------------------------------------------------------------------- | 19 | - | 1 | |
| --------CAGTCAAAGGACCAATATTG--------------------------------------------------------------------------------- | 20 | 1 | - | |
| --CCTCCACAGTCAAAGGACCA--------------------------------------------------------------------------------------- | 20 | - | 1 | |
| -----------TCAAAGGACCAATATTGTG------------------------------------------------------------------------------- | 19 | - | 1 | |
| rat | gacctccacagtcaaaggaccaatattgtggtagggcgtctgtagtcaggcaactcgctctgtctcatgacccTCCAAATTGCAAGACCTTTatgggcactggaagtca | |||
| ************************************************************************************************************* | ||||
| ----------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040973 ENSRNOG00000033340 RGD1561446_predicted | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046337 ENSRNOG00000033340 RGD1561446_predicted | |||
| rat | (((.((((..((((((((..........(((.((((..((((.((.(((((.....)).))).)))).)))))))))..........)))))...)))..)))).))). | 0.920 -31.95 | ||
| rat | chromosome:1:51653498:51653606:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Same_strand|Boundary_non-coding|ENSRNOT00000048434|ENSRNOG00000033340 ## Same_strand|Intronic_non-coding|ENSRNOT00000046337|ENSRNOG00000033340 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| ## ENSRNOG00000033340|protein_coding|RGD1561446_predicted| |
novel_lenNOK_cloningOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)
block1821004 [novel_lenNOK_cloningOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.079 | no | no | 0.35/0.58 | 19/26/0.26 | 0.0 0.0 0.0 | 0.0 2.1 0.0 | 8 11 1 | 0 0 0 | 2 1 1 | 0 0 0 | 11 22 8 | 0 -18 2 | 5arm_loop_3arm 5arm_loop_3arm 3arm | 2 2 2 | nd nd nd | 0.37 0.36 0.42 | 2 4 4 | 23 | 2 | 2 | 2 |
| reads | miRBase family seed | |||
| seed | -----------------------GUAACUU--------------------------------- | 12 | novel | |
| seed | ------------CGCAUAG-------------------------------------------- | 9 | novel | |
| seed | -------------GCAUAGC------------------------------------------- | 1 | novel | |
| seed | -------------------------------------UCCAUGG------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------TCGCATAGCCATGTAACTT--------------------------------- | 19 | 1 | 8 | |
| ----------------------TGTAACTTAAAGGAGTCCATGG------------------- | 22 | - | 4 | |
| ----------------------TGTAACTTAAAGGAGTCCATGGAGG---------------- | 25 | - | 3 | |
| ----------------------TGTAACTTAAAGGAGTCCA---------------------- | 19 | - | 2 | |
| ----------------------TGTAACTTAAAGGAGTCCATGGAGGA--------------- | 26 | - | 2 | |
| ----------------------TGTAACTTAAAGGAGTCCAT--------------------- | 20 | - | 1 | |
| ------------------------------------GTCCATGGAGGATGAAGGG-------- | 19 | - | 1 | |
| ------------CGCATAGCCATGTAACTTAAAGGA--------------------------- | 24 | - | 1 | |
| rat | tgttcttggcaTCGCATAGCCATGTAACTTAAAGGAGTCCATGGAGGatgaagggcctcaaca | |||
| *************************************************************** | ||||
| rat | .(((...(((....(((..(((((..((((....)))).)))))...)))....)))..))). | 1.000 -17.40 | ||
| rat | chromosome:5:25627888:25627950:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerOK_nonpairedHIGH_bulgeHIGH (1 loci)
sblock6495 [novel_lenNOK_cloningOK_multiarm_DicerOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.183 | no | no | 0.22/0.39 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 8 | 0 0 | 1 3 | 0 0 | 26 28 | -2 1 | 5arm_loop 3arm | 1 1 | nd nd | 0.33 0.33 | 3 4 | 10 | 4 | 3 | 2 |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------GUAUGAA-------------------------------------- | 9 | novel | |||
| seed | ---------------------------GUGUUUC------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S1 | T4S2 | |||
| -------------------------------------------------AGTATGAAGAAATATATG---------------------------- | 18 | - | 1 | 2 | 6 | |
| --------------------------TGTGTTTCTGTAGCTTGT--------------------------------------------------- | 18 | 1 | - | - | - | |
| rat | gagcatcaaataccagtgtaacccaatgtgtttctgtagcttgttggaaAGTATGAAGAAATATATGttagagatgttcttgtgtttatagctcc | |||||
| *********************************************************************************************** | ||||||
| rat | ((((...((((((.((.........((((((((((...((((......))))....))))))))))............)).))))))...)))). | 0.560 -20.40 | ||||
| rat | chromosome:2:152380039:152380133:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerOK_shortStem (1 loci)
sblock1922 [novel_lenNOK_cloningOK_multiarm_DicerOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.526 | no | no | 0.28/0.48 | 18/26/0.41 | 0.0 0.2 | 0.0 2.1 | 2 15 | 0 0 | 1 5 | 0 0 | 2 0 | 1 4 | 5arm 3arm | 1 1 | nd nd | 0.26 0.28 | 2 2 | 17 | 5 | 3 | 2 |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------UUCAACA----------------- | 13 | novel | ||||
| seed | ---AUGAAGC---------------------------------------------------- | 2 | novel | ||||
| seed | -------------------------------------AUUCAAC------------------ | 1 | novel | ||||
| seed | ----------------------------------------CAACAAG--------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T4S1 | T5S1 | |||
| -------------------------------------ATTCAACAAGCTTTTTAGGGGGG-- | 23 | - | 1 | 1 | - | 3 | |
| -------------------------------------ATTCAACAAGCTTTTTAGG------ | 19 | 1 | 1 | - | - | 1 | |
| -------------------------------------ATTCAACAAGCTTTTTAG------- | 18 | - | - | - | 1 | 1 | |
| --TATGAAGCTTTGTCTGTCC----------------------------------------- | 19 | - | - | - | - | 2 | |
| -------------------------------------ATTCAACAAGCTTTTTAGGGGGGTC | 25 | - | - | - | - | 2 | |
| -------------------------------------ATTCAACAAGCTTTTTAGGGGG--- | 22 | 1 | - | - | - | - | |
| ---------------------------------------TCAACAAGCTTTTTAGGGGGGTC | 23 | - | - | - | - | 1 | |
| ------------------------------------CATTCAACAAGCTTTTTAGGGGGGTC | 26 | - | - | - | - | 1 | |
| rat | ctTATGAAGCTTTGTCTGTCCgtccatccatctgttCATTCAACAAGCTTTTTAGGGGGGTC | ||||||
| ************************************************************** | |||||||
| rat | ((((.(((((((((..((..((..........))..))..)))..)))))).))))...... | 0.970 -9.80 | |||||
| rat | chromosome:1:128271043:128271104:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_Multihit_5varHIGH (1 loci)
sblock1401 [novel_lenNOK_cloningOK_multiarm_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.438 | no | no | 0.44/0.59 | 18/24/0.60 | 2.6 0.0 0.0 0.0 | 1.4 0.0 0.0 0.0 | 7 1 1 1 | 0 0 0 0 | 3 1 1 1 | 0 0 0 0 | 5 32 52 27 | 23 0 -17 14 | 5arm 5arm 5arm_loop_3arm 3arm | 21 21 21 21 | nd nd nd nd | 0.30 0.23 0.42 0.50 | 4 2 3 8 | 10 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------UCCAAUG------------------------------------------------------------------------------------------------------- | 4 | novel | ||
| seed | ------------GUGUCAA------------------------------------------------------------------------------------------------- | 3 | novel | ||
| seed | -----------------------------------------------------CCUAGAG-------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------------AAUCAUC------------------------------------- | 1 | novel | ||
| seed | ---------------------------------CCACUCC---------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -----GTCCAATGTGTCAATGGTGGGTTG--------------------------------------------------------------------------------------- | 24 | - | - | 2 | |
| -----------TGTGTCAATGGTGGGTTGG-------------------------------------------------------------------------------------- | 19 | 1 | - | 1 | |
| -----GTCCAATGTGTCAATGGTGG------------------------------------------------------------------------------------------- | 20 | - | 1 | - | |
| ----------------------------------------------------TCCTAGAGGGACAGCAGCA--------------------------------------------- | 19 | - | - | 1 | |
| -----------------------------------------------------------------------TAATCATCAAGGGTAGGG--------------------------- | 18 | - | - | 1 | |
| -----GTCCAATGTGTCAATGGTGGGT----------------------------------------------------------------------------------------- | 22 | - | - | 1 | |
| -----------TGTGTCAATGGTGGGTTGGT------------------------------------------------------------------------------------- | 20 | - | - | 1 | |
| --------------------------------TCCACTCCTCTGCAGTCCAGTC-------------------------------------------------------------- | 22 | - | 1 | - | |
| rat | gacaaGTCCAATGTGTCAATGGTGGGTTGGTtTCCACTCCTCTGCAGTCCAGTCCTAGAGGGACAGCAGCATAATCATCAAGGGTAGGGaatagagccattactagaatcactgtc | ||||
| ******************************************************************************************************************** | |||||
| rat | ((((........(((....((((.((((.((((((((.(((((((.((((..((...)).)))).))))...........))))).))))))..))))...))))....))))))) | 0.670 -29.50 | |||
| rat | chromosome:1:51028676:51028791:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)
block962390 [novel_lenNOK_cloningOK_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.137 | no | no | 0.30/0.47 | 19/22/0.43 | 0.0 1.0 | 0.0 0.0 | 5 6 | 0 0 | 4 1 | 0 0 | 23 7 | -18 -6 | 5arm_loop_3arm 3arm_loop | 23 23 | nd nd | 0.68 0.40 | 10 4 | 14 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------CCACUGU-------------------------- | 8 | novel | |||
| seed | -------------------------------CCAAGGA------------------- | 3 | novel | |||
| seed | -----------------------------GUCCAAG--------------------- | 3 | novel | |||
| len | cloning frequencies | |||||
| T3S2 | T4S1 | T4S2 | T5S1 | |||
| -----------------------TCCACTGTCCAAGGACTTT--------------- | 19 | 1 | 1 | 1 | 5 | |
| ----------------------------TGTCCAAGGACTTTTATATTGT------- | 22 | - | - | - | 3 | |
| ------------------------------TCCAAGGACTTTTATATTGT------- | 20 | - | - | - | 3 | |
| rat | aggacctccaatgcgtcagtaccTCCACTGTCCAAGGACTTTTATATTGTaggacct | |||||
| ********************************************************* | ||||||
| rat | (((.(((.(((((....(((.(((..........))))))....))))).))).))) | 0.550 -11.80 | ||||
| rat | chromosome:1:51423342:51423398:1 | intergenic |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 31189 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.