other hairpins
novel_lenNOK_cloningOK_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)
novel_lenNOK_cloningOK_multiarm_Multihit_shortStem (1 loci)
sblock6789 [novel_lenNOK_cloningOK_multiarm_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.098 | no | no | 0.36/0.58 | 18/24/0.23 | 0.0 2.0 0.5 0.5 0.0 | 0.0 4.7 0.0 2.5 0.0 | 1 3 4 6 21 | 0 0 0 0 0 | 1 1 1 1 4 | 0 0 0 0 0 | 25 30 31 17 3 | 8 -8 -3 8 27 | 5arm 5arm_loop_3arm 3arm 3arm 3arm | 17 17 17 17 17 | nd nd nd nd nd | 0.50 0.26 0.32 0.21 0.47 | 6 3 3 2 6 | 40 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------------------------------------------GACAUGA-------------- | 26 | novel | ||||
| seed | ----------------------------------------------------------------GUCCCAU--------------------------------- | 5 | novel | ||||
| seed | -----------------------------------------------------GUGACCU-------------------------------------------- | 3 | novel | ||||
| seed | -------------------------------GGGAAGA------------------------------------------------------------------ | 2 | novel | ||||
| seed | --------------------------ACACUGG----------------------------------------------------------------------- | 1 | novel | ||||
| seed | -------------------------------------AGGAACC------------------------------------------------------------ | 1 | novel | ||||
| seed | -------------------------------------------------------------------CCAUCUU------------------------------ | 1 | novel | ||||
| seed | -------------------------------------------------------GACCUUC------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S1 | T4S1 | T5S1 | |||
| ----------------------------------------------------------------------------------TGACATGAGGTTTGGGTTT--- | 19 | 1 | 2 | 1 | - | 21 | |
| ----------------------------------------------------TGTGACCTTCATGTCCCATCT------------------------------- | 21 | - | - | - | - | 3 | |
| ---------------------------------------------------------------TGTCCCATCTTCCAGGCCA---------------------- | 19 | - | - | - | - | 3 | |
| ---------------------------------------------------------------TGTCCCATCTTCCAGGCCATGACA----------------- | 24 | - | - | - | - | 2 | |
| ------------------------------------GAGGAACCGGAGATCTTGTGACC--------------------------------------------- | 23 | - | - | - | - | 1 | |
| ------------------------------TGGGAAGAGGAACCGGAGA------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| ----------------------------------------------------------------------------------TGACATGAGGTTTGGGTTTAAA | 22 | - | - | - | - | 1 | |
| ------------------------------------------------------TGACCTTCATGTCCCATCT------------------------------- | 19 | - | - | - | - | 1 | |
| -------------------------CACACTGGGAAGAGGAAC------------------------------------------------------------- | 18 | - | - | - | 1 | - | |
| ------------------------------------------------------------------CCCATCTTCCAGGCCATGACA----------------- | 21 | - | - | - | - | 1 | |
| ------------------------------TGGGAAGAGGAACCGGAGATCTT--------------------------------------------------- | 23 | - | - | - | - | 1 | |
| rat | aaaatgaagatttattcaatgtggccacactgggaagaggaaccggagatcttgtgaccttcatgtcccatcttccaggccaTGACATGAGGTTTGGGTTTaaa | ||||||
| ******************************************************************************************************** | |||||||
| rat | .((((..((((((.......((((((......(((((((((...((((.((....)).))))...)))..)))))).))))))......))))))..))))... | 0.930 -27.82 | |||||
| rat | chromosome:20:5531794:5531897:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_loopOverlap_mirtron_bulgeHIGH (1 loci)
sblock4793 [novel_lenNOK_cloningOK_multiarm_loopOverlap_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.122 | no | no | 0.42/0.59 | 18/23/0.58 | 0.3 0.0 | 1.9 1.0 | 12 7 | 0 0 | 7 5 | 0 0 | 32 12 | -9 16 | 5arm_loop_3arm 3arm | 1 1 | 33 0 | 0.25 0.26 | 4 3 | 19 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | ---------------------------------CUGAGAA------------------------------------------------------------ | 9 | novel | |||||||
| seed | -------------------------------------------------------------------GAGCCCU-------------------------- | 7 | novel | |||||||
| seed | ----------------------------------UGAGAAG----------------------------------------------------------- | 2 | novel | |||||||
| seed | -----------------------------------GAGAAGU---------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------TGAGCCCTCTCCTTCTCCACAG------------ | 22 | 3 | - | - | - | - | - | - | 1 | |
| --------------------------------TCTGAGAAGTGTGAAGAC-------------------------------------------------- | 18 | - | 1 | - | - | - | - | 2 | - | |
| --------------------------------TCTGAGAAGTGTGAAGACTC------------------------------------------------ | 20 | - | 1 | - | 1 | - | - | 1 | - | |
| --------------------------------TCTGAGAAGTGTGAAGACT------------------------------------------------- | 19 | - | 1 | - | - | - | 1 | - | - | |
| ------------------------------------------------------------------TGAGCCCTCTCCTTCTCCA--------------- | 19 | - | 1 | - | 1 | - | - | - | - | |
| ---------------------------------CTGAGAAGTGTGAAGACTCGGC--------------------------------------------- | 22 | - | - | - | - | - | - | - | 1 | |
| ----------------------------------TGAGAAGTGTGAAGACTCGG---------------------------------------------- | 20 | - | - | - | 1 | - | - | - | - | |
| --------------------------------TCTGAGAAGTGTGAAGACTCGGC--------------------------------------------- | 23 | - | - | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------TGAGCCCTCTCCTTCTCCACA------------- | 21 | - | - | - | - | 1 | - | - | - | |
| ---------------------------------CTGAGAAGTGTGAAGACT------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | |
| rat | atatgtctgggtcccacgagaactgagaaggtTCTGAGAAGTGTGAAGACTCGGCttttcttatgcTGAGCCCTCTCCTTCTCCACAGtgtatgatatag | |||||||||
| **************************************************************************************************** | ||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>> | ENSRNOT00000018973 ENSRNOG00000013763 NP_001099558.1 | |||||||||
| rat | .((((((..........(((((..((((.(((((.(((((((.(((....)))))))))).......))))).)))).)))))..........)))))). | 0.490 -25.95 | ||||||||
| rat | chromosome:16:69355473:69355572:-1 | Same_strand|Intronic_coding|ENSRNOT00000018973|ENSRNOG00000013763 ## ENSRNOG00000013763|protein_coding|NP_001099558.1|ER lipid raft associated 2 [Source:RefSeq_peptide;Acc:NP_001099558] |
novel_lenNOK_cloningOK_multiarm_loopOverlap_randfoldOK_bulgeHIGH (1 loci)
block1766942 [novel_lenNOK_cloningOK_multiarm_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.37/0.45 | 19/20/0.17 | 0.0 0.0 | 0.0 0.0 | 13 1 | 0 0 | 3 1 | 0 0 | 16 0 | -15 3 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.32 0.26 | 3 4 | 18 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------AAGACAC---------------------- | 15 | novel | ||
| seed | --------------------ACACUCU------------------- | 2 | novel | ||
| seed | ---------------------------AGAUACC------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S1 | |||
| ----------------TAAGACACTCTAGATACCT----------- | 19 | 1 | 1 | 13 | |
| -------------------GACACTCTAGATACCTAGGA------- | 20 | - | - | 2 | |
| --------------------------TAGATACCTAGGATCCATGA | 20 | - | - | 1 | |
| rat | cattgtctaggtgtctTAAGACACTCTAGATACCTaggatccatga | ||||
| ********************************************** | |||||
| rat | (((..(((((((((((..((...))..)))))))))))....))). | 1.000 -15.30 | |||
| rat | chromosome:5:114553402:114553447:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_shortStem_5varHIGH_loopOverlap_nonpairedHIGH (1 loci)
block1487685 [novel_lenNOK_cloningOK_multiarm_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.515 | no | no | 0.42/0.52 | 19/26/0.60 | 0.0 2.4 | 0.0 4.4 | 1 14 | 0 0 | 1 2 | 0 0 | 28 0 | -17 -1 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.57 0.37 | 4 3 | 15 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------------------------GGUCAUC--------------------------- | 5 | novel | ||
| seed | ---------------------------------------CAUCAAG------------------------ | 5 | novel | ||
| seed | ------------------------------------------CAAGAUG--------------------- | 3 | novel | ||
| seed | ------------------------------------------------GUCAGUC--------------- | 1 | novel | ||
| seed | -----------------------------CCCACCU---------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S1 | |||
| --------------------------------------TCATCAAGATGTCAGTCTCCCACCTC------ | 26 | - | - | 3 | |
| -----------------------------------TGGTCATCAAGATGTCAGTCTCCC----------- | 24 | - | - | 2 | |
| -----------------------------------TGGTCATCAAGATGTCAGTC--------------- | 20 | - | - | 1 | |
| -----------------------------------------TCAAGATGTCAGTCTCCCACC-------- | 21 | 1 | - | - | |
| -----------------------------------TGGTCATCAAGATGTCAGTCT-------------- | 21 | - | - | 1 | |
| -----------------------------------------TCAAGATGTCAGTCTCCCACCTCAA---- | 25 | - | - | 1 | |
| --------------------------------------TCATCAAGATGTCAGTCTC------------- | 19 | - | - | 1 | |
| --------------------------------------TCATCAAGATGTCAGTCTCCC----------- | 21 | - | - | 1 | |
| -----------------------------------------TCAAGATGTCAGTCTCCCAC--------- | 20 | - | - | 1 | |
| -----------------------------------TGGTCATCAAGATGTCAGT---------------- | 19 | - | - | 1 | |
| ----------------------------TCCCACCTGGTCATCAAGATG--------------------- | 21 | - | 1 | - | |
| -----------------------------------------------TGTCAGTCTCCCACCTCAAGAGT | 23 | - | - | 1 | |
| rat | ctctgtcacagaaggagctggtccacatTCCCACCTGGTCATCAAGATGTCAGTCTCCCACCTCAAGAGT | ||||
| ********************************************************************** | |||||
| rat | ((((.........((((((((((...((..((....))..))...)))..))).)))).......)))). | 0.690 -12.69 | |||
| rat | chromosome:3:115214069:115214138:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_shortStem_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH (1 loci)
block2540575 [novel_lenNOK_cloningOK_multiarm_shortStem_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.39/0.50 | 18/22/0.25 | 0.0 3.9 | 0.0 4.6 | 1 19 | 0 0 | 1 8 | 0 0 | 13 0 | -16 -7 | 5arm_loop_3arm 3arm | 2 3 | nd nd | 0.47 0.39 | 8 3 | 20 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | ---------------------------AGUACAA-------------- | 4 | novel | |||||||
| seed | ------------------------GAGAGUA----------------- | 3 | novel | |||||||
| seed | -----------------------------UACAAGC------------ | 3 | novel | |||||||
| seed | --------------------AGCUGAG--------------------- | 2 | novel | |||||||
| seed | -------------------------AGAGUAC---------------- | 2 | novel | |||||||
| seed | ---------------------GCUGAGA-------------------- | 2 | novel | |||||||
| seed | ------------------AAAGCUG----------------------- | 1 | miR-320 | |||||||
| seed | -------------------AAGCUGA---------------------- | 1 | novel | |||||||
| seed | -----------------------UGAGAGU------------------ | 1 | novel | |||||||
| seed | --------------UCUGAAA--------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------GTACAAGCAGTTAGGATGC- | 19 | 1 | 1 | - | 1 | - | - | - | - | |
| ------------------------GAGAGTACAAGCAGTTAGGA---- | 20 | - | - | - | - | - | - | 2 | - | |
| --------------------AGCTGAGAGTACAAGCAG---------- | 18 | - | - | - | - | - | - | - | 2 | |
| -----------------------TGAGAGTACAAGCAGTTA------- | 18 | - | - | - | 2 | - | - | - | - | |
| --------------------------GAGTACAAGCAGTTAGGATGCC | 22 | - | - | - | - | - | - | 2 | - | |
| --------------------------GAGTACAAGCAGTTAGGA---- | 18 | - | - | - | - | 1 | 1 | - | - | |
| -------------------AAGCTGAGAGTACAAGCAG---------- | 19 | - | - | - | - | - | - | 1 | - | |
| -----------------------TGAGAGTACAAGCAGTTAG------ | 19 | - | - | 1 | - | - | - | - | - | |
| -----------------GAAAGCTGAGAGTACAAGCAGT--------- | 22 | 1 | - | - | - | - | - | - | - | |
| -------------CTCTGAAAGCTGAGAGTAC---------------- | 19 | 1 | - | - | - | - | - | - | - | |
| ------------------AAAGCTGAGAGTACAAGC------------ | 18 | - | - | 1 | - | - | - | - | - | |
| -------------------AAGCTGAGAGTACAAGCA----------- | 18 | - | 1 | - | - | - | - | - | - | |
| ----------------------CTGAGAGTACAAGCAGTT-------- | 18 | 1 | - | - | - | - | - | - | - | |
| rat | ggcagtttgtggtCTCTGAAAGCTGAGAGTACAAGCAGTTAGGATGCC | |||||||||
| ************************************************ | ||||||||||
| ................................................>>>>>>>>>> | ENSRNOT00000049395 ENSRNOG00000029780 LOC684279 | |||||||||
| rat | (((((((((((.((((........)))).)))))))........)))) | 0.970 -16.60 | ||||||||
| rat | chromosome:9:93254565:93254612:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000049395|ENSRNOG00000029780 ## ENSRNOG00000029780|protein_coding|LOC684279|coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:RefSeq_peptide;Acc:NP_001015019] |
novel_lenNOK_cloningOK_multiarm_shortStem_bulgeHIGH (1 loci)
sblock8018 [novel_lenNOK_cloningOK_multiarm_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.458 | no | no | 0.37/0.60 | 18/25/0.47 | 0.0 0.0 0.0 | 0.0 0.0 2.0 | 1 1 7 | 0 0 0 | 1 1 4 | 0 0 0 | 7 29 3 | 24 0 32 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.25 0.27 0.48 | 4 3 4 | 15 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------------------------------------------------GGGCAAU-------------------- | 13 | novel | |||
| seed | --------GUCUCUG---------------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ------------------------------GAAGAUU------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S2 | T4S2 | T5S1 | |||
| ---------------------------------------------------------------------------------------GGGGCAATCATACTTTATACACACT--- | 25 | - | - | - | 5 | |
| ---------------------------------------------------------------------------------------GGGGCAATCATACTTTATACACA----- | 23 | 1 | - | - | 1 | |
| ---------------------------------------------------------------------------------------GGGGCAATCATACTTTATACACAC---- | 24 | - | 1 | - | 1 | |
| ---------------------------------------------------------------------------------------GGGGCAATCATACTTTAT---------- | 18 | - | - | - | 2 | |
| -----------------------------TGAAGATTGCTCTTTGAGTCTC---------------------------------------------------------------- | 22 | - | - | - | 1 | |
| ---------------------------------------------------------------------------------------GGGGCAATCATACTTTATACAC------ | 22 | - | - | - | 1 | |
| -------TGTCTCTGGTGGAACCCTGG---------------------------------------------------------------------------------------- | 20 | - | - | - | 1 | |
| ---------------------------------------------------------------------------------------GGGGCAATCATACTTTATA--------- | 19 | - | - | 1 | - | |
| rat | ggaaagctgtctctggtggaaccctggtttgaagattgctctttgagtctcacttgaggaagaggtggcttcatcttgggacctgtgGGGGCAATCATACTTTATACACACTtct | |||||
| ******************************************************************************************************************* | ||||||
| rat | ((((...(((....((((((.(((((((((.(((((.(((((((...((((....))))..)))).)))...))))).)))))...))))....)).))))....)))...)))) | 0.450 -30.30 | ||||
| rat | chromosome:3:76956966:76957080:1 | intergenic |
novel_lenNOK_cloningOK_shortStem_5varHIGH_bulgeHIGH (1 loci)
block2312147 [novel_lenNOK_cloningOK_shortStem_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.315 | no | no | 0.41/0.42 | 19/22/0.08 | 1.5 | 1.5 | 10 | 0 | 2 | 0 | 4 | 23 | 5arm | 1 | nd | 0.26 | 4 | 12 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----ACGAUGC------------------------------------------------------------------------------------------------------ | 9 | novel | |
| seed | ----------GCCAGCA------------------------------------------------------------------------------------------------- | 3 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| ----TACGATGCCAGCATACAAA------------------------------------------------------------------------------------------- | 19 | 1 | 7 | |
| ---------TGCCAGCATACAAATCTGT-------------------------------------------------------------------------------------- | 19 | - | 3 | |
| ----TACGATGCCAGCATACAAATCT---------------------------------------------------------------------------------------- | 22 | - | 1 | |
| rat | ggcaTACGATGCCAGCATACAAATCTGTtccataagctctttgccaggggatttgaacttagttggcaagagggcaagaagcagattcccaccccatgtttgtgagttgagcca | |||
| ****************************************************************************************************************** | ||||
| rat | (((...((((....(((.(((((((((((......((((((((((((..((.......))..)))))).))))))....)))))))).........))).)))..)))).))). | 0.730 -30.10 | ||
| rat | chromosome:8:57747145:57747258:-1 | intergenic |
novel_lenNOK_cloningOK_shortStem_5varHIGH_loopOverlap (1 loci)
block71227 [novel_lenNOK_cloningOK_shortStem_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.325 | no | no | 0.32/0.47 | 19/23/0.64 | 1.5 | 1.3 | 11 | 0 | 3 | 0 | 0 | -22 | 3arm | 1 | nd | 0.06 | 1 | 11 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------AACCUGA---------------- | 6 | novel | ||
| seed | ------------------------------GAACAUC----------- | 3 | novel | ||
| seed | --------------------------ACCUGAA--------------- | 2 | novel | ||
| len | cloning frequencies | ||||
| T4S1 | T5S1 | T5S2 | |||
| -----------------------------TGAACATCATTCTTGGGGC | 19 | - | 2 | 1 | |
| ------------------------AAACCTGAACATCATTCTTGGGG- | 23 | - | 2 | - | |
| ------------------------AAACCTGAACATCATTCTTGGG-- | 22 | - | 2 | - | |
| ------------------------AAACCTGAACATCATTCTT----- | 19 | - | 1 | - | |
| ------------------------AAACCTGAACATCATTCTTGG--- | 21 | - | 1 | - | |
| -------------------------AACCTGAACATCATTCTTGGGG- | 22 | - | 1 | - | |
| -------------------------AACCTGAACATCATTCTTGG--- | 20 | 1 | - | - | |
| rat | gttctaagtccaatggtcctgctcAAACCTGAACATCATTCTTGGGGC | ||||
| ************************************************ | |||||
| ---------------------------------------------------------- | ENSRNOT00000041563 ENSRNOG00000010370 NP_001102296.1 | ||||
| rat | ((((((((...(((((...((.(((....))).))))))))))))))) | 0.990 -8.70 | |||
| rat | chromosome:10:40318969:40319016:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000048600|ENSRNOG00000010370 ## Opposite_strand|Intronic_coding|ENSRNOT00000041563|ENSRNOG00000010370 ## ENSRNOG00000010370|protein_coding|NP_001102296.1|TNFAIP3 interacting protein 1 [Source:RefSeq_peptide;Acc:NP_001102296] |
novel_lenNOK_cloningOK_shortStem_5varHIGH_randfoldOK (1 loci)
block129682 [novel_lenNOK_cloningOK_shortStem_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.58/0.78 | 18/19/0.00 | 1.1 | 0.8 | 14 | 0 | 7 | 0 | 2 | 23 | 3arm | 3 | nd | 0.22 | 2 | 14 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | --------------------------------------------------------------------------------------------UUCCCGG------------ | 9 | novel | ||||||
| seed | -----------------------------------------------------------------------------------------UUUUUCC--------------- | 2 | novel | ||||||
| seed | -------------------------------------------------------------------------------------------UUUCCCG------------- | 1 | novel | ||||||
| seed | ------------------------------------------------------------------------------------------UUUUCCC-------------- | 1 | novel | ||||||
| seed | --------------------------------------------------------------------------------------UGUUUUU------------------ | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T4S1 | T4S2 | |||
| -------------------------------------------------------------------------------------------TTTCCCGGGGGGGGGGGA-- | 18 | - | - | 3 | 3 | 1 | 1 | 1 | |
| ----------------------------------------------------------------------------------------TTTTTTCCCGGGGGGGGGG---- | 19 | 2 | - | - | - | - | - | - | |
| ------------------------------------------------------------------------------------------TTTTCCCGGGGGGGGGGG--- | 18 | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------------------------------------TTTTTCCCGGGGGGGGGGG--- | 19 | - | - | - | - | 1 | - | - | |
| -------------------------------------------------------------------------------------TTGTTTTTTCCCGGGGGGG------- | 19 | - | - | 1 | - | - | - | - | |
| rat | tctcctgcctttctgaggattgaactcaggttgccaggattcatcagcatcacctttatctactgagctatcttcttggcctgttTTGTTTTTTCCCGGGGGGGGGGGAgg | ||||||||
| *************************************************************************************************************** | |||||||||
| ------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000003985 ENSRNOG00000002976 RGD1305539_predicted | ||||||||
| ------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000040773 ENSRNOG00000002976 RGD1305539_predicted | ||||||||
| rat | .(((((.(((..(((.(((..((((.(((((((..(((((...((((...............))))...)))))..)))))))....))))..))))))..))).))))). | 1.000 -44.66 | |||||||
| rat | chromosome:11:64217261:64217371:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000040773|ENSRNOG00000002976 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000003985|ENSRNOG00000002976 ## ENSRNOG00000002976|protein_coding|RGD1305539_predicted| ## {Repeats: dust 64217264 64217274 0 class=dust} |
novel_lenNOK_cloningOK_shortStem_loopOverlap_bulgeHIGH (1 loci)
block2225107 [novel_lenNOK_cloningOK_shortStem_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.745 | no | no | 0.61/0.61 | 18/18/0.00 | 0.0 | 0.0 | 35 | 0 | 8 | 0 | 4 | -3 | 5arm_loop | 1 | nd | 0.28 | 4 | 41 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | -----ACCUUCC----------------------------------------------- | 41 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----GACCTTCCAGTGCCTTCC------------------------------------- | 18 | 1 | 3 | 8 | 4 | 11 | 2 | 8 | 4 | |
| rat | gccaGACCTTCCAGTGCCTTCCaaactcacccataggactaactgagaccagagtgggt | |||||||||
| *********************************************************** | ||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000014703 ENSRNOG00000010865 Cohh1_predicted | |||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000033021 ENSRNOG00000010865 Cohh1_predicted | |||||||||
| rat | (((..((((((((((.(((...............)))....)))).))..)).)).))) | 0.870 -9.46 | ||||||||
| rat | chromosome:7:71388323:71388381:1 | Same_strand|Intronic_coding|ENSRNOT00000033021|ENSRNOG00000010865 ## Same_strand|Boundary_non-coding|ENSRNOT00000014768|ENSRNOG00000010865 ## ENSRNOG00000010865|protein_coding|Cohh1_predicted| |
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