other hairpins
novel_lenNOK_gcHIGH_shortStem_mirtron_bulgeHIGH (1 loci)
novel_lenNOK_gcHIGH_shortStem_mirtron_randfoldOK_nonpairedHIGH (1 loci)
block563550 [novel_lenNOK_gcHIGH_shortStem_mirtron_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.94/0.94 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 41 | 5arm | 2 | 4 | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -GCCCCGC------------------------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| GGCCCCGCCCCCAGGGCG-------------------------------------------------------------------------------------------------- | 18 | 1 | |
| rat | GGCCCCGCCCCCAGGGCGttctctccgggttggcagcaggcttggctgtatccctgtgggtggccgtaggggccacactgtatccccctggagagcagaccatgggggtgctgccc | ||
| ******************************************************************************************************************** | |||
| +++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000025576 ENSRNOG00000018822 Slc5a5 | ||
| rat | (((..((((((((.((....(((((((((..((..((((...((((.....((((((((....))))))))))))..))))..)).)))))))))....)).))))))))..))). | 0.920 -61.60 |
| rat | chromosome:16:19050862:19050977:1 | Same_strand|Boundary_coding|ENSRNOT00000025576|ENSRNOG00000018822 ## ENSRNOG00000018822|protein_coding|Slc5a5|Sodium/iodide cotransporter (Na(+)/I(-) cotransporter) (Sodium-iodide symporter) (Na(+)/I(-)-symporter) (Solute carrier family 5 member 5). [Source:UniProtKB/Swiss-Prot;Acc:Q63008] |
novel_lenNOK_loopOverlap_mirtron_randfoldOK_bulgeHIGH (1 loci)
block1848834 [novel_lenNOK_loopOverlap_mirtron_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 38 | -3 | 5arm_loop | 1 | 2 | 0.22 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------UGGUUUU---------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| --------------------------------------CTGGTTTTTCTTGTTTCC------------------------------------------------------------ | 18 | 1 | |
| rat | tccttagtgtctctgtttaaaatacctgggaatgagttCTGGTTTTTCTTGTTTCCagacaagaaaaggctggtgttcccagcaggtctgtgaagaagaggagaaagaaatgggga | ||
| ******************************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++ | ENSRNOT00000034978 ENSRNOG00000024506 LOC500475 | ||
| rat | ((((((...(((((.(((.....((((((((((.....(((((((((((((((....))))))))))).)))).)))))))...))).....)))....)))))......)))))) | 0.440 -34.00 |
| rat | chromosome:5:79539649:79539764:1 | Same_strand|Intronic_coding|ENSRNOT00000034978|ENSRNOG00000024506 ## ENSRNOG00000024506|protein_coding|LOC500475|Putative uncharacterized protein LOC500475. [Source:UniProtKB/TrEMBL;Acc:Q6AYG4] |
novel_lenNOK_multiarm_5varHIGH_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH (1 loci)
block1966333 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.019 | no | no | 0.44/0.53 | 18/22/0.25 | 0.0 2.7 | 0.0 4.3 | 1 3 | 0 0 | 1 2 | 0 0 | 43 32 | -15 -3 | 5arm_loop_3arm 3arm | 1 1 | 1 6 | 0.42 0.41 | 6 6 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------GAGCGGA------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------GGUAGGA--------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------GAAUUUG-------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------AAUUUGG------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T2S2 | |||
| --------------------------------------------------AGAATTTGGAGCGGAATG---------------------------------------- | 18 | 1 | - | - | |
| -------------------------------------------AGGTAGGAGAATTTGGAGC---------------------------------------------- | 19 | - | 1 | - | |
| ---------------------------------------------------GAATTTGGAGCGGAATGTAGGT----------------------------------- | 22 | - | - | 1 | |
| ---------------------------------------------------------GGAGCGGAATGTAGGTGAT-------------------------------- | 19 | - | - | 1 | |
| rat | tttgcggatgcttctgactctgctgcagtagtactgggtcgtcAGGTAGGAGAATTTGGAGCGGAATGTAGGTGATggtattgcagtcgagtaagactctctgcaaaa | ||||
| ************************************************************************************************************ | |||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000012327 ENSRNOG00000008781 NP_001100219.1 | ||||
| rat | ((((((((....(((.((((.(((((((((.((((...(((((((((......)))))..))))......))))....))))))))).)))).)))...)))))))). | 0.980 -34.70 | |||
| rat | chromosome:6:109945440:109945547:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000012327|ENSRNOG00000008781 ## ENSRNOG00000008781|protein_coding|NP_001100219.1|similar to HSPC288 (predicted) (RGD1310769_predicted), mRNA [Source:RefSeq_dna;Acc:NM_001106749] |
novel_lenNOK_multiarm_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH (1 loci)
block1224576 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.63/0.71 | 19/21/0.67 | 1.5 0.0 | 1.5 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 40 51 | -3 -9 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.33 0.37 | 3 5 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------CCGCCCU---------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------CCCUGUG------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------CCGCUCA----------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S2 | |||
| ---------------------------------------------------GCCGCTCAAGTGTCACTGG------------------------------------------------ | 19 | 1 | - | - | |
| -------------------------------------------GCCCTGTGGCCGCTCAAGTGT------------------------------------------------------ | 21 | - | - | 1 | |
| ----------------------------------------ACCGCCCTGTGGCCGCTCAAG--------------------------------------------------------- | 21 | - | 1 | - | |
| rat | tcttcggggtgccagtcagtcccgcgggcctgcagcctccACCGCCCTGTGGCCGCTCAAGTGTCACTGGagtgggcagagaggagggaggctgggctgggagtagggccccggagga | ||||
| ********************************************************************************************************************** | |||||
| rat | (((((.(((.(((......((((...((((..((((((((....((((.((.((((((.((.....)).)))))).)).)).))..))))))))))))))))....)))))).))))) | 0.980 -65.80 | |||
| rat | chromosome:2:234129349:234129466:-1 | intergenic ## {SimpF: oe = 0.81 -1 CpG} |
novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_mirtron_randfoldOK_nonpairedHIGH (1 loci)
sblock2614 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_mirtron_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.37/0.53 | 18/23/0.56 | 4.0 0.0 0.3 | 4.0 1.0 0.0 | 3 3 3 | 0 0 0 | 2 2 2 | 0 0 0 | 30 45 21 | -3 -10 12 | 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 | 6 2 31 | 0.35 0.45 0.53 | 3 5 5 | 9 | 5 | 15 | 0 |
| reads | miRBase family seed | ||||||
| seed | ----------------------------------------------CAACCAA------------------------------------------------------------- | 3 | novel | ||||
| seed | ----------------------------------------------------------------------------GUCCUGC------------------------------- | 2 | novel | ||||
| seed | ---------------------------------------------------------------------------UGUCCUG-------------------------------- | 1 | novel | ||||
| seed | --------------------------------------GACAUUG--------------------------------------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------GAGACAU----------------------------------------------------------------------- | 1 | novel | ||||
| seed | -------------------------------ACAAGGA---------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S1 | T3S1 | T3S2 | T5S2 | |||
| ---------------------------------------------------------------------------TGTCCTGCAATTCTGAAT--------------------- | 18 | 2 | - | - | - | - | |
| ---------------------------------------------TCAACCAATCCCCACAAGGGAA----------------------------------------------- | 22 | - | - | 2 | - | - | |
| ---------------------------------------------TCAACCAATCCCCACAAGG-------------------------------------------------- | 19 | - | - | - | - | 1 | |
| -------------------------------------AGACATTGTCAACCAATCCCCAC------------------------------------------------------ | 23 | - | - | - | - | 1 | |
| --------------------------------------------------------------------------ATGTCCTGCAATTCTGAAT--------------------- | 19 | - | 1 | - | - | - | |
| -----------------------------------GGAGACATTGTCAACCAATCCCC-------------------------------------------------------- | 23 | - | - | - | - | 1 | |
| ------------------------------GACAAGGAGACATTGTCAACCAA------------------------------------------------------------- | 23 | - | - | - | 1 | - | |
| rat | ttggcagatgtaatagaggatcctagtgatGACAAGGAGACATTGTCAACCAATCCCCACAAGGGAAtgaggacATGTCCTGCAATTCTGAATgggttctctggtacatatcag | ||||||
| ****************************************************************************************************************** | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000003334 ENSRNOG00000002390 Gnb2l1 | ||||||
| rat | .(((...(((((.((((((((((....((......((.((((.((((...((.((((.....)))).))..)))))))))).....)).....)))))))))).))))).))). | 0.970 -36.80 | |||||
| rat | chromosome:10:34068855:34068968:1 | Same_strand|Boundary_coding|ENSRNOT00000003334|ENSRNOG00000002390 ## Same_strand|Intronic_coding|ENSRNOT00000003334|ENSRNOG00000002390 ## ENSRNOG00000002390|protein_coding|Gnb2l1|Guanine nucleotide-binding protein subunit beta-2-like 1 (Receptor of activated protein kinase C 1) (RACK1) (Receptor for activated C kinase). [Source:UniProtKB/Swiss-Prot;Acc:P63245] |
novel_lenNOK_multiarm_DicerNOK_5varHIGH_mirtron_randfoldOK (1 loci)
sblock6580 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.40/0.50 | 18/24/0.60 | 2.0 0.0 0.0 | 1.0 0.5 0.0 | 2 2 1 | 0 0 0 | 2 2 1 | 0 0 0 | 16 20 10 | 9 7 19 | 5arm 3arm 3arm | 1 1 1 | 39 0 11 | 0.21 0.05 0.28 | 3 1 3 | 5 | 5 | -1 | 2 |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------------------------------------UUUGGUU-------------------------------- | 2 | novel | ||||
| seed | ---------------------GUGAAGG-------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------CUCUGUG------------------------------------------------------------------------------ | 1 | novel | ||||
| seed | ---------------------------------------------------------------------------UCACAGU-------------------- | 1 | miR-27a/27b | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S2 | T5S1 | |||
| --------------------------------------------------------------CTTTGGTTTCTCTTCACAG--------------------- | 19 | - | 1 | - | - | - | |
| --------------------TGTGAAGGATTGAGACCATCAA------------------------------------------------------------ | 22 | - | - | 1 | - | - | |
| ----------------GCTCTGTGAAGGATTGAGACCATC-------------------------------------------------------------- | 24 | - | - | - | - | 1 | |
| --------------------------------------------------------------------------TTCACAGTGCAGCCTTCA---------- | 18 | - | - | - | 1 | - | |
| --------------------------------------------------------------CTTTGGTTTCTCTTCACAGT-------------------- | 20 | 1 | - | - | - | - | |
| rat | gcagtcttattgggagGCTCTGTGAAGGATTGAGACCATCAAgcctttggttttaatctgggCTTTGGTTTCTCTTCACAGTGCAGCCTTCAtatccatgct | ||||||
| ****************************************************************************************************** | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000042377 ENSRNOG00000031814 Sort1 | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000049127 ENSRNOG00000031814 Sort1 | ||||||
| rat | (((.........((((((((((((((((...(((((((..((((((..(((....))).))))))))))))))))))))))...))))))).......))). | 1.000 -41.39 | |||||
| rat | chromosome:2:203914570:203914671:1 | Same_strand|Intronic_coding|ENSRNOT00000049127|ENSRNOG00000031814 ## Same_strand|Boundary_coding|ENSRNOT00000042377|ENSRNOG00000031814 ## ENSRNOG00000031814|protein_coding|Sort1|Sortilin precursor (Neurotensin receptor 3) (NTR3) (Glycoprotein 110) (Gp110). [Source:UniProtKB/Swiss-Prot;Acc:O54861] |
novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_bulgeHIGH (1 loci)
sblock12841 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.358 | no | no | 0.43/0.67 | 18/23/0.67 | 1.5 0.0 0.0 0.0 0.0 | 0.5 0.0 0.0 0.0 0.0 | 2 1 1 1 1 | 0 0 0 0 0 | 2 1 1 1 1 | 0 0 0 0 0 | 20 40 50 23 14 | 10 -11 -20 1 11 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm 3arm | 6 6 8 12 12 | nd nd nd nd nd | 0.44 0.43 0.23 0.30 0.32 | 4 4 4 5 6 | 6 | 5 | 0 | -2 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------CAAAGAU---------------------------------------------------- | 1 | novel | ||||
| seed | ------------------------CGUGGUG--------------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------CCAUUGC----------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------------------------------CAUCAAG------------------------- | 1 | novel | ||||
| seed | ---------------------------------------------------AAUGCUG------------------------------------------ | 1 | novel | ||||
| seed | ---------------------UACCGUG------------------------------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S1 | T2S2 | T3S1 | T5S1 | |||
| --------------------------------------------------CAATGCTGCCATTGCCACCATC---------------------------- | 22 | - | - | 1 | - | - | |
| -----------------------CCGTGGTGATGTGGTCCC----------------------------------------------------------- | 18 | 1 | - | - | - | - | |
| --------------------GTACCGTGGTGATGTGGTCCCC---------------------------------------------------------- | 22 | - | - | - | - | 1 | |
| -------------------------------------------------------------------CCATCAAGACCAAGCGCAG-------------- | 19 | - | 1 | - | - | - | |
| ----------------------------------------CCAAAGATGTCAATGCTGCCATT------------------------------------- | 23 | - | - | - | - | 1 | |
| ---------------------------------------------------------GCCATTGCCACCATCAAGAC----------------------- | 20 | - | - | - | 1 | - | |
| rat | tacatggcttgctgcctgctGTACCGTGGTGATGTGGTCCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGCAGcatccagtttgtgg | ||||||
| **************************************************************************************************** | |||||||
| rat | (((((((..((((((..(((......(((((..(((((.......((((.((....)).))))))))))))))......))))))))).)))...)))). | 0.930 -28.51 | |||||
| rat | chromosome:X:157580961:157581060:1 | intergenic |
sblock12713 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.829 | no | no | 0.68/0.78 | 18/24/0.29 | 2.2 0.0 | 4.2 0.0 | 5 2 | 0 0 | 3 2 | 0 0 | 23 12 | -8 8 | 5arm_loop_3arm 3arm | 12 15 | 10 4 | 0.46 0.47 | 5 4 | 7 | 5 | 10 | 10 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------------CCUUCGG----------------------- | 2 | novel | ||||
| seed | ------------------------UCGCAGC---------------------------------------------------- | 2 | novel | ||||
| seed | ------------------------------CCUCCGG---------------------------------------------- | 1 | novel | ||||
| seed | ---------------------------CAGCCUC------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------GCAGCCU-------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T2S1 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------GCCTTCGGCTCCTAGGACC------------ | 19 | - | - | - | 1 | 1 | |
| -----------------------------GCCTCCGGGACCATCTCC------------------------------------ | 18 | 1 | - | - | - | - | |
| -----------------------GTCGCAGCCTCCGGGACC------------------------------------------ | 18 | - | - | 1 | - | - | |
| --------------------------GCAGCCTCCGGGACCATCT-------------------------------------- | 19 | 1 | - | - | - | - | |
| -------------------------CGCAGCCTCCGGGACCATCTC------------------------------------- | 21 | - | 1 | - | - | - | |
| -----------------------GTCGCAGCCTCCGGGACCATCTCC------------------------------------ | 24 | - | - | 1 | - | - | |
| rat | cagccgccttacaagtctctccaGTCGCAGCCTCCGGGACCATCTCCttgtcGCCTTCGGCTCCTAGGACCagccagccctgt | ||||||
| *********************************************************************************** | |||||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000049856 ENSRNOG00000034150 | ||||||
| rat | (((..((.......((((....(((((..((....((((.....))))....))...)))))....))))......)).))). | 0.660 -14.42 | |||||
| rat | chromosome:X:139088479:139088561:-1 | Same_strand|Boundary_coding|ENSRNOT00000049856|ENSRNOG00000034150 ## ENSRNOG00000034150|protein_coding|| |
novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_randfoldOK (1 loci)
sblock3208 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.00/0.26 | 19/23/0.25 | 0.0 2.0 0.0 | 0.0 0.0 0.0 | 1 2 1 | 0 0 0 | 1 2 1 | 0 0 0 | 3 15 12 | 2 -14 -1 | 5arm 5arm_loop_3arm 3arm | 3 26 26 | nd nd nd | 0.16 0.22 0.32 | 1 4 6 | 4 | 4 | -3 | -8 |
| reads | miRBase family seed | |||||
| seed | ----UGACUGA----------------------------------------------- | 1 | novel | |||
| seed | ----------------------------AAAAAAA----------------------- | 1 | novel | |||
| seed | ----------------UUUUUUU----------------------------------- | 1 | novel | |||
| seed | --------------------UUUUAAA------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S2 | |||
| -------------------TTTTTAAATAAAAAAAAAA-------------------- | 19 | - | - | 1 | - | |
| ---------------------------TAAAAAAAAAATTTTTTGG------------ | 19 | 1 | - | - | - | |
| ---------------TTTTTTTTTAAATAAAAAAAAAA-------------------- | 23 | - | 1 | - | - | |
| ---CTGACTGACTTTTTTTTTT------------------------------------ | 19 | - | - | - | 1 | |
| rat | ggaCTGACTGACTTTTTTTTTTTTAAATAAAAAAAAAATTTTTTGGtcacttctgtcc | |||||
| ********************************************************** | ||||||
| rat | ((((.((.(((((.((((((((((....))))))))))......)))))..)).)))) | 1.000 -13.30 | ||||
| rat | chromosome:12:8849838:8849895:-1 | intergenic ## {Repeats: AT_rich 1 32 -1 class=Low_complexity,dust 8849858 8849869 0 class=dust,dust 8849858 8849881 0 class=dust,AT_rich 7 30 -1 class=Low_complexity,dust 8849874 8849883 0 class=dust,AT_rich 1 18 -1 class=Low_complexity,AT_rich 23 32 -1 class=Low_complexity} |
novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH (1 loci)
sblock191 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.47/0.48 | 19/23/0.50 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 5 19 35 25 | 28 18 -1 13 | 5arm 5arm 3arm 3arm | 22 23 23 23 | nd nd nd nd | 0.35 0.32 0.39 0.53 | 5 3 4 4 | 4 | 3 | -20 | -16 |
| reads | miRBase family seed | ||||
| seed | --------------------UUGCUUG------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------CCUAAUU-------------------------------------------------- | 1 | novel | ||
| seed | ------CCAGGAG--------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------------CCACCCU------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T4S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------------------------TCCACCCTGTAAAGCATCT------------------------- | 19 | - | 1 | - | |
| -------------------CTTGCTTGATTGAGCACAG-------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| -----CCCAGGAGAGTTTTCTTGCTTGA------------------------------------------------------------------------------------------ | 23 | - | - | 1 | |
| ------------------------------------------------------------TCCTAATTTCTTGGTCCACCCTG----------------------------------- | 23 | 1 | - | - | |
| rat | gctgtCCCAGGAGAGTTTTCTTGCTTGATTGAGCACAGgaatactgcttgatttggatatTCCTAATTTCTTGGTCCACCCTGTAAAGCATCTgagcatgctcctgcttgggacagtc | ||||
| ********************************************************************************************************************** | |||||
| rat | (((((((((((.((((.....((((((..((...(((((...(((....((((.((.....)).))))....)))....)))))....))..)))))).))))...))))))))))). | 0.820 -40.20 | |||
| rat | chromosome:1:49040648:49040765:-1 | intergenic |
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