other hairpins
novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH (1 loci)
sblock8686 [novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.551 | no | no | 0.50/0.67 | 20/26/0.67 | 0.0 5.7 | 0.0 6.7 | 3 3 | 0 0 | 1 2 | 0 0 | 3 0 | -1 1 | 5arm_loop 3arm | 22 26 | nd nd | 0.50 0.50 | 4 7 | 6 | 3 | 2 | 9 |
| reads | miRBase family seed | ||||
| seed | ----ACUCAUG-------------------------------------------------- | 3 | novel | ||
| seed | -------------------------------------GGCUCCU----------------- | 1 | novel | ||
| seed | ------------------------------------AGGCUCC------------------ | 1 | novel | ||
| seed | ----------------------------CUCCCUG-------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T3S2 | T5S1 | |||
| ---GACTCATGAAGACTCGGCAA-------------------------------------- | 20 | 3 | - | - | |
| ------------------------------------AGGCTCCTGACACACCTAGATCACC | 25 | - | 1 | - | |
| -----------------------------------GAGGCTCCTGACACACCTAGATCACC | 26 | - | - | 1 | |
| ---------------------------GCTCCCTGGAGGCTCCTGACACAC---------- | 24 | - | - | 1 | |
| rat | cagGACTCATGAAGACTCGGCAAtcctGCTCCCTGGAGGCTCCTGACACACCTAGATCACC | ||||
| ************************************************************* | |||||
| rat | ((((((((....((....((((....))))..)).)))..)))))................ | 0.750 -11.30 | |||
| rat | chromosome:4:150761559:150761619:-1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem_bulgeHIGH (1 loci)
sblock1363 [novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.191 | no | no | 0.58/0.60 | 19/20/0.33 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 1 0 | 21 33 | 5arm 3arm | 52 52 | nd nd | 0.25 0.61 | 4 5 | 3 | 2 | 12 | 1 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------------------ACCCUCU----------- | 2 | novel | |
| seed | --GCAGGAC------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------------------------------------------------------------------------------GACCCTCTCAGCAGCTAGA | 19 | - | 2 | |
| -TGCAGGACCTCTACTGGCAC------------------------------------------------------------------------------ | 20 | 1 | - | |
| rat | tTGCAGGACCTCTACTGGCACaggatatccactgtagctggtcttacactgttgcagtatgtcaactgttgctggacatgGACCCTCTCAGCAGCTAGA | |||
| *************************************************************************************************** | ||||
| rat | (((((((.((....((((((((((((((..((((((((.(((.....))))))))))))))))..)))).)))))....))..)))....))))..... | 0.750 -27.60 | ||
| rat | chromosome:1:49162581:49162679:1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_mirtron_bulgeHIGH (1 loci)
sblock11545 [novel_lenNOK_multiarm_DicerNOK_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.114 | no | no | 0.48/0.55 | 19/21/0.50 | 0.3 0.0 | 0.7 0.0 | 3 1 | 0 0 | 3 1 | 0 0 | 23 25 | 10 3 | 5arm 3arm | 1 1 | 37 0 | 0.26 0.29 | 4 4 | 4 | 4 | 0 | -1 |
| reads | miRBase family seed | |||||
| seed | ------------------------CUCAGGA--------------------------------------------------------------------------- | 2 | novel | |||
| seed | -------------------------UCAGGAG-------------------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------------UUGCACA-------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S1 | T5S1 | T5S2 | |||
| -----------------------ACTCAGGAGAACAGGTGCA---------------------------------------------------------------- | 19 | - | 1 | - | 1 | |
| ------------------------CTCAGGAGAACAGGTGCATG-------------------------------------------------------------- | 20 | 1 | - | - | - | |
| ------------------------------------------------------------CTTGCACATTCTCTCCTGTAG------------------------- | 21 | - | - | 1 | - | |
| rat | agactagatgtgtacgtgaacacACTCAGGAGAACAGGTGCATGcagttggtgctcagtaCTTGCACATTCTCTCCTGTAGgatgactcccagcactgttctggct | |||||
| ********************************************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000014987 ENSRNOG00000010652 Dock6 | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000049585 ENSRNOG00000010652 Dock6 | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000060860 ENSRNOG00000010652 Dock6 | |||||
| rat | ((.(((((.((((.......((..(((((((((....(((((.......(((((...))))))))))....))))))).))..)).......))))...))))))) | 0.530 -31.75 | ||||
| rat | chromosome:8:20957407:20957512:-1 | Same_strand|Intronic_coding|ENSRNOT00000049585|ENSRNOG00000010652 ## Same_strand|Intronic_non-coding|ENSRNOT00000014987|ENSRNOG00000010652 ## ENSRNOG00000010652|protein_coding|Dock6|dedicator of cytokinesis 6 Gene [Source:MGI Symbol;Acc:MGI:1914789] |
novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH (1 loci)
sblock5772 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.128 | no | no | 0.56/0.72 | 18/19/0.00 | 1.4 0.0 | 1.5 0.0 | 8 1 | 0 0 | 5 1 | 0 0 | 3 3 | -8 -4 | 5arm_loop_3arm 3arm_loop | 3 3 | nd nd | 0.44 0.33 | 3 3 | 9 | 5 | 0 | 0 |
| reads | miRBase family seed | ||||||
| seed | ------GCAUUGC------------------------------- | 2 | novel | ||||
| seed | --------AUUGCAG----------------------------- | 2 | novel | ||||
| seed | ---------UUGCAGG---------------------------- | 1 | novel | ||||
| seed | -------CAUUGCA------------------------------ | 1 | novel | ||||
| seed | ----CAGCAUU--------------------------------- | 1 | novel | ||||
| seed | -----AGCAUUG-------------------------------- | 1 | novel | ||||
| seed | ------------------------GGCGUCC------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S2 | T3S1 | T3S2 | T4S1 | |||
| -------CATTGCAGGGACACAGAG------------------- | 18 | - | - | 1 | - | 1 | |
| -----AGCATTGCAGGGACACAG--------------------- | 18 | - | - | 2 | - | - | |
| ---GCAGCATTGCAGGGACAC----------------------- | 18 | - | - | - | 1 | - | |
| --------ATTGCAGGGACACAGAGGC----------------- | 19 | - | - | 1 | - | - | |
| ------GCATTGCAGGGACACAGA-------------------- | 18 | - | 1 | - | - | - | |
| ----CAGCATTGCAGGGACACA---------------------- | 18 | 1 | - | - | - | - | |
| -----------------------AGGCGTCCGTCCAGTGGC--- | 18 | - | - | - | 1 | - | |
| rat | gttGCAGCATTGCAGGGACACAGAGGCGTCCGTCCAGTGGCagc | ||||||
| ******************************************** | |||||||
| rat | (((((..(((((...((((........))))...)))))))))) | 0.990 -13.80 | |||||
| rat | chromosome:19:35163125:35163168:-1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)
sblock2279 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.170 | no | no | 0.67/0.81 | 18/21/0.33 | 0.0 2.4 | 0.0 2.6 | 1 5 | 0 0 | 1 4 | 0 0 | 9 4 | -2 -2 | 5arm_loop 3arm | 1 1 | nd nd | 0.44 0.43 | 3 7 | 6 | 5 | 5 | 0 |
| reads | miRBase family seed | ||||||
| seed | ------------------------------CCCGGGG------------------ | 2 | novel | ||||
| seed | --------------------------------CGGGGUU---------------- | 2 | novel | ||||
| seed | ----------AGCCAAC-------------------------------------- | 1 | novel | ||||
| seed | ----------------------------AGCCCGG-------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S1 | T2S2 | T3S1 | T5S1 | |||
| -------------------------------CCGGGGTTGGGAGACCCGGA---- | 20 | - | - | - | 1 | - | |
| ---------------------------GAGCCCGGGGTTGGGAGAC--------- | 19 | - | - | - | - | 1 | |
| -----------------------------GCCCGGGGTTGGGAGACC-------- | 18 | - | - | - | - | 1 | |
| ---------GAGCCAACTTCGGAGCCG---------------------------- | 18 | - | - | 1 | - | - | |
| -------------------------------CCGGGGTTGGGAGACCCG------ | 18 | 1 | - | - | - | - | |
| -----------------------------GCCCGGGGTTGGGAGACCCGG----- | 21 | - | 1 | - | - | - | |
| rat | gcctcctacGAGCCAACTTCGGAGCCGGAGCCCGGGGTTGGGAGACCCGGAcgca | ||||||
| ******************************************************* | |||||||
| ----------------------------------------------------------------- | ENSRNOT00000006067 ENSRNOG00000004146 Coro7 | ||||||
| rat | ((.(((......(((((..(((.((....)))))..))))).......))).)). | 0.930 -23.02 | |||||
| rat | chromosome:10:11057563:11057617:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000006067|ENSRNOG00000004146 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000005816|ENSRNOG00000004146 ## ENSRNOG00000004146|protein_coding|Coro7|Coronin-7 (70 kDa WD repeat tumor rejection antigen) (Fragment). [Source:UniProtKB/Swiss-Prot;Acc:O35828] |
novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap_mirtron (1 loci)
sblock2221 [novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.158 | no | no | 0.58/0.67 | 18/24/0.67 | 0.0 0.0 | 2.0 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 0 0 | -1 9 | 5arm_loop 3arm | 1 1 | 34 3 | 0.25 0.53 | 2 8 | 3 | 2 | 10 | 0 |
| reads | miRBase family seed | |||
| seed | -CAGGGAG----------------------------------------------------- | 2 | novel | |
| seed | --------------------------------------------CCCUCUC---------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| ACAGGGAGTGGTGAGGCTGG----------------------------------------- | 20 | - | 1 | |
| -------------------------------------------TCCCTCTCCTGGCAGGGT | 18 | - | 1 | |
| ACAGGGAGTGGTGAGGCTGGATCT------------------------------------- | 24 | 1 | - | |
| rat | ACAGGGAGTGGTGAGGCTGGATCTctgacctcctgacctggctTCCCTCTCCTGGCAGGGT | |||
| ************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>> | ENSRNOT00000021553 ENSRNOG00000016058 Kazald1 | |||
| rat | ...(((((.((.((((((((.((...........)).)))))))))).)))))........ | 0.980 -22.60 | ||
| rat | chromosome:1:250190443:250190503:1 | Same_strand|Intronic_non-coding|ENSRNOT00000021553|ENSRNOG00000016058 ## Same_strand|Boundary_non-coding|ENSRNOT00000021553|ENSRNOG00000016058 ## ENSRNOG00000016058|protein_coding|Kazald1|Kazal-type serine peptidase inhibitor domain 1 [Source:RefSeq_peptide;Acc:NP_001028236] |
novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap_randfoldOK (1 loci)
sblock11007 [novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.74/0.74 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 1 | 0 -1 | 5arm 3arm | 1 1 | nd nd | 0.26 0.26 | 3 3 | 2 | 2 | -1 | -2 |
| reads | miRBase family seed | |||
| seed | ----------------------GGCCGAG------------ | 1 | novel | |
| seed | -CCGGACC--------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T4S1 | |||
| ACCGGACCAGGGCAGTGCC---------------------- | 19 | 1 | - | |
| ---------------------AGGCCGAGCCCTGGCACTG- | 19 | - | 1 | |
| rat | ACCGGACCAGGGCAGTGCCacAGGCCGAGCCCTGGCACTGg | |||
| ***************************************** | ||||
| rat | .((((.(((((((...(((...)))...)))))))..)))) | 1.000 -21.70 | ||
| rat | chromosome:7:117978442:117978482:-1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_shortStem_mirtron (1 loci)
sblock9685 [novel_lenNOK_multiarm_DicerNOK_shortStem_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.018 | no | no | 0.58/0.63 | 18/22/0.56 | 0.0 0.1 | 0.0 1.4 | 1 8 | 0 0 | 1 3 | 0 0 | 2 1 | 5 4 | 5arm 3arm | 1 1 | 39 0 | 0.21 0.22 | 2 2 | 9 | 4 | -2 | 0 |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------GGCCUGG--------------- | 7 | novel | |||
| seed | ---UGGGGUG---------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------UGGCCUG---------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T4S1 | |||
| ---------------------------------------TGGCCTGGCTCGGTATCACAG-- | 21 | 2 | - | - | - | |
| ---------------------------------------TGGCCTGGCTCGGTATCAC---- | 19 | 2 | - | - | - | |
| ---------------------------------------TGGCCTGGCTCGGTATCA----- | 18 | 1 | - | - | - | |
| --TTGGGGTGCTGAGCTAACC----------------------------------------- | 19 | - | - | 1 | - | |
| ---------------------------------------TGGCCTGGCTCGGTATCACAGA- | 22 | - | - | - | 1 | |
| --------------------------------------TTGGCCTGGCTCGGTATCACAG-- | 22 | - | 1 | - | - | |
| ---------------------------------------TGGCCTGGCTCGGTATCACA--- | 20 | 1 | - | - | - | |
| rat | gcTTGGGGTGCTGAGCTAACCtggagatattctgttccTTGGCCTGGCTCGGTATCACAGAg | |||||
| ************************************************************** | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000007970 ENSRNOG00000005673 NP_001102127.1 | |||||
| rat | .(((..((((((((((((.((.((((........))))..))..))))))))))))...))) | 1.000 -24.30 | ||||
| rat | chromosome:5:28328372:28328433:1 | Same_strand|Boundary_coding|ENSRNOT00000007970|ENSRNOG00000005673 ## Same_strand|Intronic_coding|ENSRNOT00000007970|ENSRNOG00000005673 ## ENSRNOG00000005673|protein_coding|NP_001102127.1|acute myelogenous leukemia 1 translocation 1 protein [Source:RefSeq_peptide;Acc:NP_001102127] |
novel_lenNOK_multiarm_DicerNOK_shortStem_mirtron_bulgeHIGH (1 loci)
sblock12131 [novel_lenNOK_multiarm_DicerNOK_shortStem_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.031 | no | no | 0.52/0.78 | 18/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 2 | 22 25 | 5arm 3arm | 1 1 | 74 0 | 0.39 0.29 | 5 4 | 2 | 1 | -9 | -1 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------CCUCUGA--------------- | 1 | novel |
| seed | -CUGGGGC-------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| GCTGGGGCCCCCTGCTTG---------------------------------------------------------------------------- | 18 | 1 | |
| -----------------------------------------------------------------------ACCTCTGACTTGTATCCCCAG-- | 21 | 1 | |
| rat | GCTGGGGCCCCCTGCTTGgtccgtgtggggggggctctgaatctcctcatccaccccgagtaccaccctccACCTCTGACTTGTATCCCCAGtg | ||
| ********************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000027762 ENSRNOG00000020450 Slc26a6 | ||
| rat | (((((((.....(((..((((...((((((((.(((((((......)))........))))....))))))))....)))).))).))))))). | 0.980 -35.00 |
| rat | chromosome:8:113931850:113931943:1 | Same_strand|Intronic_coding|ENSRNOT00000027762|ENSRNOG00000020450 ## ENSRNOG00000020450|protein_coding|Slc26a6|solute carrier family 26, member 6 Gene [Source:MGI Symbol;Acc:MGI:2159728] |
novel_lenNOK_multiarm_DicerNOK_shortStem_mirtron_randfoldOK (1 loci)
sblock11315 [novel_lenNOK_multiarm_DicerNOK_shortStem_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.53/0.58 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 0 | 10 8 | 5arm 3arm | 1 1 | 44 2 | 0.21 0.17 | 2 1 | 2 | 2 | -2 | -1 |
| reads | miRBase family seed | |||
| seed | -GGCUGAA----------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------CGCUCUG----------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S2 | |||
| ------------------------------------------CCGCTCTGTTTACTTCTCC | 19 | - | 1 | |
| AGGCTGAAGTGTGCAGAGC------------------------------------------ | 19 | 1 | - | |
| rat | AGGCTGAAGTGTGCAGAGCcatcaccacagtatatgaacataCCGCTCTGTTTACTTCTCC | |||
| ************************************************************* | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>> | ENSRNOT00000010856 ENSRNOG00000008019 Oxr1 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>> | ENSRNOT00000010858 ENSRNOG00000008019 Oxr1 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>> | ENSRNOT00000010754 ENSRNOG00000008019 Oxr1 | |||
| rat | .((..((((((.(((((((........((.....))........))))))).)))))).)) | 0.970 -18.09 | ||
| rat | chromosome:7:77491944:77492004:1 | Same_strand|Intronic_coding|ENSRNOT00000010856|ENSRNOG00000008019 ## ENSRNOG00000008019|protein_coding|Oxr1|OXR1_RAT Isoform 3 of Q4V8B0 - Rattus norvegicus (Rat) [Source:UniProtKB/SpliceVariant;Acc:Q4V8B0-3] |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 31195 | Next page | Page 31204 |
©2008 InteRNA Genomics B.V.