other hairpins
novel_lenNOK_multiarm_DicerNOK_shortStem_mirtron_randfoldOK (1 loci)
novel_lenNOK_multiarm_DicerNOK_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
sblock2880 [novel_lenNOK_multiarm_DicerNOK_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.39/0.40 | 18/25/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 0 | 7 0 | 5arm 3arm | 1 1 | nd nd | 0.39 0.33 | 4 4 | 2 | 2 | -8 | -1 |
| reads | miRBase family seed | |||
| seed | --------------------------------CUGUGCC----------------- | 1 | novel | |
| seed | -UUGUGGA------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T3S2 | |||
| TTTGTGGAGACTGAAATG-------------------------------------- | 18 | - | 1 | |
| -------------------------------TCTGTGCCTAATTTTTCATCCACCA | 25 | 1 | - | |
| rat | TTTGTGGAGACTGAAATGggatagaactttcTCTGTGCCTAATTTTTCATCCACCA | |||
| ******************************************************** | ||||
| rat | ...(((((....(((.(((((((((......))))).)))).)))....))))).. | 1.000 -16.40 | ||
| rat | chromosome:10:99385110:99385165:1 | intergenic |
novel_lenNOK_multiarm_DicerOK_5varHIGH (1 loci)
sblock10899 [novel_lenNOK_multiarm_DicerOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.110 | no | no | 0.35/0.47 | 19/25/0.38 | 0.0 0.0 3.0 0.0 0.0 | 0.0 0.0 1.2 0.0 0.0 | 1 1 4 1 1 | 0 0 0 0 0 | 1 1 1 1 1 | 0 0 0 0 0 | 10 17 26 41 27 | 25 17 5 -4 6 | 5arm 5arm 5arm 5arm_loop 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.38 0.36 0.26 0.42 0.37 | 4 4 3 5 3 | 8 | 1 | 1 | 1 |
| reads | miRBase family seed | ||
| seed | ---------------------------GAGAAUU------------------------------------------------------------------------------- | 2 | novel |
| seed | ---------------------------------UUCUGUG------------------------------------------------------------------------- | 2 | novel |
| seed | ------------------------------------------GGUUGAU---------------------------------------------------------------- | 1 | novel |
| seed | ------------------UGGACAU---------------------------------------------------------------------------------------- | 1 | novel |
| seed | --------------------------------------------------------------------GUGUGCC-------------------------------------- | 1 | novel |
| seed | -----------GGAAAUG----------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------TTTCTGTGTTGGTTGATGT-------------------------------------------------------------- | 19 | 2 | |
| --------------------------TGAGAATTTCTGTGTTGGTT------------------------------------------------------------------- | 20 | 1 | |
| -----------------GTGGACATCTGAGAATTTCTGT-------------------------------------------------------------------------- | 22 | 1 | |
| -----------------------------------------TGGTTGATGTATCAGAGTG----------------------------------------------------- | 19 | 1 | |
| ----------TGGAAATGTGGACATCTGAGA---------------------------------------------------------------------------------- | 21 | 1 | |
| --------------------------TGAGAATTTCTGTGTTGGTTGATGT-------------------------------------------------------------- | 25 | 1 | |
| -------------------------------------------------------------------TGTGTGCCAAACTGGAAAG--------------------------- | 19 | 1 | |
| rat | gtctgtgtgcTGGAAATGTGGACATCTGAGAATTTCTGTGTTGGTTGATGTATCAGAGTGgctgttaTGTGTGCCAAACTGGAAAGcacggagagtccatcttcagttgtggg | ||
| ***************************************************************************************************************** | |||
| rat | .((..((.((((((...((((((.((((....(((((...(((((..(((((.(((.....))).)))))..)))))...)))))...))))..)))))).))))))))..)) | 0.980 -32.50 |
| rat | chromosome:7:96049710:96049822:-1 | intergenic |
novel_lenNOK_multiarm_DicerOK_5varHIGH_loopOverlap_nonpairedHIGH (1 loci)
sblock6572 [novel_lenNOK_multiarm_DicerOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.578 | no | no | 0.63/0.80 | 18/20/0.20 | 0.0 1.3 0.0 | 0.0 1.7 0.0 | 1 3 1 | 0 0 0 | 1 2 1 | 0 0 0 | 9 11 2 | -1 1 13 | 5arm_loop 3arm 3arm | 1 1 1 | nd nd nd | 0.35 0.37 0.39 | 2 4 4 | 5 | 4 | 2 | 1 |
| reads | miRBase family seed | |||||
| seed | ------------------------------------CCAGCGU---------------------- | 2 | novel | |||
| seed | ----------------------------------AGCCAGC------------------------ | 1 | novel | |||
| seed | ----------GGGUGUG------------------------------------------------ | 1 | novel | |||
| seed | ----------------------------------------------CAGUGUG------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T3S1 | T3S2 | T5S2 | |||
| ---------------------------------------------ACAGTGTGTGGGGACCGG-- | 18 | - | - | - | 1 | |
| ---------------------------------GAGCCAGCGTGGACAGTG-------------- | 18 | 1 | - | - | - | |
| ---------CGGGTGTGGGTGGGCCTCCG------------------------------------ | 20 | - | 1 | - | - | |
| -----------------------------------GCCAGCGTGGACAGTGTG------------ | 18 | - | - | 1 | - | |
| -----------------------------------GCCAGCGTGGACAGTGTGT----------- | 19 | - | - | 1 | - | |
| rat | ggccggccgCGGGTGTGGGTGGGCCTCCGttggGAGCCAGCGTGGACAGTGTGTGGGGACCGGtt | |||||
| ***************************************************************** | ||||||
| rat | .((((((((((.((.((.((.((.((((....)))))).)).)).))....)))))...))))). | 0.990 -25.40 | ||||
| rat | chromosome:2:199014970:199015034:1 | intergenic |
novel_lenNOK_multiarm_DicerOK_5varHIGH_nonpairedHIGH_bulgeHIGH (1 loci)
sblock9421 [novel_lenNOK_multiarm_DicerOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.407 | no | no | 0.42/0.47 | 19/21/0.33 | 2.0 0.0 | 1.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 2 5 | 2 4 | 5arm 3arm | 1 1 | nd nd | 0.32 0.37 | 4 3 | 3 | 2 | 2 | 2 |
| reads | miRBase family seed | |||
| seed | ---GAGAAGC-------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------CCCUGUA---------------- | 1 | novel | |
| seed | -------AGCAACA---------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| --TGAGAAGCAACATTGCAGTCA------------------------------------- | 21 | - | 1 | |
| ------AAGCAACATTGCAGTCATG----------------------------------- | 19 | - | 1 | |
| ------------------------------------TCCCTGTATTCTGTCTCCT----- | 19 | 1 | - | |
| rat | ccTGAGAAGCAACATTGCAGTCATGgcctagagttgTCCCTGTATTCTGTCTCCTttggg | |||
| ************************************************************ | ||||
| rat | ((.(((.((((....(((((..(((((.....)))))..)))))...)).)).))).)). | 1.000 -12.50 | ||
| rat | chromosome:5:114554075:114554134:-1 | intergenic |
novel_lenNOK_multiarm_DicerOK_Multihit_loopOverlap_nonpairedHIGH (1 loci)
sblock1571 [novel_lenNOK_multiarm_DicerOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.674 | no | no | 0.40/0.53 | 19/20/0.67 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 14 12 | -4 -2 | 5arm_loop 3arm_loop | 1 20 | nd nd | 0.47 0.35 | 5 2 | 3 | 1 | 2 | 3 |
| reads | miRBase family seed | ||
| seed | ------------------------------------CCUUGGU------------------------ | 2 | novel |
| seed | ---------------AGACGUG--------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------------TCCTTGGTGAAGCAATATGA------------ | 20 | 2 | |
| --------------TAGACGTGTCTCAGGCTCA---------------------------------- | 19 | 1 | |
| rat | tccatgagaaggtaTAGACGTGTCTCAGGCTCAatTCCTTGGTGAAGCAATATGAatttggggtgga | ||
| ******************************************************************* | |||
| ----------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | ||
| rat | (((((..(((..((((...((.(((((((........))))).)).))..))))..)))...))))) | 0.430 -12.40 |
| rat | chromosome:1:52002590:52002656:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
novel_lenNOK_multiarm_DicerOK_loopOverlap_bulgeHIGH (1 loci)
sblock2595 [novel_lenNOK_multiarm_DicerOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.138 | no | no | 0.44/0.56 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 12 14 | -1 0 | 5arm_loop 3arm | 1 1 | nd nd | 0.39 0.28 | 5 4 | 2 | 2 | 1 | 2 |
| reads | miRBase family seed | |||
| seed | -------------GGCAGUG---------------------------------------------- | 1 | miR-34a/34c/449a | |
| seed | -----------------------------------AGACACA------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S2 | |||
| ------------TGGCAGTGTTCAAACTTG------------------------------------ | 18 | 1 | - | |
| ----------------------------------AAGACACATGCTGCCCCT-------------- | 18 | - | 1 | |
| rat | ctaggcactcagTGGCAGTGTTCAAACTTGcctgAAGACACATGCTGCCCCTggagcccctgcctg | |||
| ****************************************************************** | ||||
| rat | .(((((((((((.((((((((.....(((.....)))....)))))))).))).))....)))))) | 0.990 -20.80 | ||
| rat | chromosome:10:16613032:16613097:1 | intergenic |
novel_lenNOK_multiarm_DicerOK_loopOverlap_mirtron (1 loci)
sblock11103 [novel_lenNOK_multiarm_DicerOK_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.333 | no | no | 0.58/0.74 | 19/25/0.60 | 1.0 1.0 | 0.0 0.0 | 2 3 | 0 0 | 1 2 | 0 0 | 5 4 | -1 2 | 5arm_loop 3arm | 1 1 | 32 1 | 0.35 0.26 | 4 3 | 5 | 2 | 3 | 2 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------GCUUACC------------------ | 2 | novel | |
| seed | ------GCCAGGG---------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------UACCUGG--------------- | 1 | novel | |
| seed | --------CAGGGGU-------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| ---------------------------------------TGCTTACCTGGGCCTCTCCTCA---- | 22 | - | 2 | |
| ------------------------------------------TTACCTGGGCCTCTCCTCA---- | 19 | 1 | - | |
| -----AGCCAGGGGTGTGACCAGCGCAGCC----------------------------------- | 25 | 1 | - | |
| -------CCAGGGGTGTGACCAGCGCAGCC----------------------------------- | 23 | 1 | - | |
| rat | tgatgAGCCAGGGGTGTGACCAGCGCAGCCgcacactgcTGCTTACCTGGGCCTCTCCTCAgcag | |||
| ***************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>> | ENSRNOT00000046048 ENSRNOG00000028816 Baz2a | |||
| rat | ((.((((..((((((....((((.(((((........)))))....)))))))))).)))).)). | 0.930 -22.40 | ||
| rat | chromosome:7:1419825:1419889:1 | Same_strand|Intronic_coding|ENSRNOT00000046048|ENSRNOG00000028816 ## ENSRNOG00000028816|protein_coding|Baz2a|bromodomain adjacent to zinc finger domain, 2A Gene [Source:MGI Symbol;Acc:MGI:2151152] |
novel_lenNOK_multiarm_DicerOK_loopOverlap_mirtron_nonpairedHIGH (1 loci)
sblock3793 [novel_lenNOK_multiarm_DicerOK_loopOverlap_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.147 | no | no | 0.52/0.53 | 19/25/0.33 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 12 18 10 | -2 -14 0 | 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 | 8 2 13 | 0.37 0.36 0.33 | 3 4 3 | 3 | 3 | 2 | 2 |
| reads | miRBase family seed | ||||
| seed | -------------------GGGUGAG-------------------------------------- | 1 | novel | ||
| seed | ----------------------------------GUCCUUC----------------------- | 1 | novel | ||
| seed | -------------CAGCAAG-------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S2 | T5S1 | |||
| ------------------AGGGTGAGACTTCACAGTCCTTCAG--------------------- | 25 | - | - | 1 | |
| ---------------------------------AGTCCTTCAGCTTGCCTCTTC---------- | 21 | - | 1 | - | |
| ------------ACAGCAAGGGTGAGACTTC--------------------------------- | 19 | 1 | - | - | |
| rat | atgtgcttctgaACAGCAAGGGTGAGACTTCACAGTCCTTCAGCTTGCCTCTTCctaggctcat | ||||
| **************************************************************** | |||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000005194 ENSRNOG00000003881 Nit1 | ||||
| rat | (((.((((..(((..(((((..(((((((....))))..))).)))))...)))..)))).))) | 1.000 -15.50 | |||
| rat | chromosome:13:87244411:87244474:-1 | Same_strand|Intronic_coding|ENSRNOT00000005194|ENSRNOG00000003881 ## Same_strand|Boundary_coding|ENSRNOT00000005194|ENSRNOG00000003881 ## ENSRNOG00000003881|protein_coding|Nit1|Nitrilase homolog 1 (EC 3.5.-.-). [Source:UniProtKB/Swiss-Prot;Acc:Q7TQ94] |
novel_lenNOK_multiarm_DicerOK_loopOverlap_randfoldOK (1 loci)
sblock10785 [novel_lenNOK_multiarm_DicerOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.68/0.84 | 19/23/0.57 | 0.0 0.6 | 1.5 1.2 | 2 5 | 0 0 | 2 3 | 0 0 | 20 14 | -1 1 | 5arm_loop 3arm | 1 1 | nd nd | 0.16 0.16 | 2 2 | 7 | 4 | 2 | 3 |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------UCAAGGG---------------------------- | 3 | novel | |||
| seed | ---------------------GGGCUCG---------------------------------------------------------------- | 2 | novel | |||
| seed | --------------------------------------------------------CUCAAGG----------------------------- | 2 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T4S1 | T5S1 | |||
| -------------------------------------------------------CCTCAAGGGCGCAAAGCCCGGCA-------------- | 23 | - | 2 | - | - | |
| --------------------------------------------------------CTCAAGGGCGCAAAGCCCG----------------- | 19 | - | - | 2 | - | |
| --------------------CGGGCTCGGCGTCCCTGGGGAA-------------------------------------------------- | 22 | - | - | - | 1 | |
| --------------------------------------------------------CTCAAGGGCGCAAAGCCCGGCA-------------- | 22 | - | - | - | 1 | |
| --------------------CGGGCTCGGCGTCCCTGGG----------------------------------------------------- | 19 | 1 | - | - | - | |
| rat | gccttggccgtgggcctggcCGGGCTCGGCGTCCCTGGGGAAgaagctgtgacctCCTCAAGGGCGCAAAGCCCGGCAtgtctcgcggggct | |||||
| ******************************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000048575 ENSRNOG00000008289 Slc25a3 | |||||
| rat | (((....(((((((....((((((((..((((((.((((((.............)))))).))))))..))))))))....)))))))))). | 1.000 -54.02 | ||||
| rat | chromosome:7:28061860:28061951:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000011494|ENSRNOG00000008289 ## Same_strand|Intronic_non-coding|ENSRNOT00000048575|ENSRNOG00000008289 ## ENSRNOG00000008289|protein_coding|Slc25a3|Phosphate carrier protein, mitochondrial precursor (PTP) (Solute carrier family 25 member 3). [Source:UniProtKB/Swiss-Prot;Acc:P16036] |
novel_lenNOK_multiarm_DicerOK_mirtron (1 loci)
sblock2586 [novel_lenNOK_multiarm_DicerOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.358 | no | no | 0.52/0.54 | 19/24/0.60 | 0.0 0.5 | 0.0 1.5 | 1 4 | 0 0 | 1 3 | 0 0 | 17 17 | -3 0 | 5arm_loop 3arm | 1 1 | 37 0 | 0.29 0.16 | 4 2 | 5 | 3 | 3 | 1 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------CUGGGCC------------------------------ | 3 | novel | ||
| seed | ------------------CUGGGUU---------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------------GUCUGGG-------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T4S2 | |||
| ---------------------------------------------------------TCTGGGCCTTCTATCCTACAG----------------- | 21 | 2 | - | - | |
| -------------------------------------------------------AGTCTGGGCCTTCTATCCT--------------------- | 19 | - | - | 1 | |
| -----------------TCTGGGTTGGAAGGCTCCACTTTG------------------------------------------------------ | 24 | 1 | - | - | |
| ---------------------------------------------------------TCTGGGCCTTCTATCCTAC------------------- | 19 | - | 1 | - | |
| rat | cagggctgggcaggttcTCTGGGTTGGAAGGCTCCACTTTGctctgcccctccctAGTCTGGGCCTTCTATCCTACAGattttgattgggtatgg | ||||
| *********************************************************************************************** | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000020733 ENSRNOG00000015300 NP_001100458.1 | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000049336 ENSRNOG00000015300 NP_001100458.1 | ||||
| rat | ((..(((.((((((.(((.((((.((((((((((.(((.................)))..)))))))))).)))).))).)))).)).))).)). | 0.460 -29.23 | |||
| rat | chromosome:10:14139294:14139388:1 | Same_strand|Intronic_coding|ENSRNOT00000020733|ENSRNOG00000015300 ## ENSRNOG00000015300|protein_coding|NP_001100458.1|splA/ryanodine receptor domain and SOCS box containing 3 [Source:RefSeq_peptide;Acc:NP_001100458] |
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