other hairpins
novel_lenNOK_multiarm_DicerOK_mirtron (1 loci)
novel_lenNOK_multiarm_DicerOK_randfoldOK_bulgeHIGH (1 loci)
sblock6824 [novel_lenNOK_multiarm_DicerOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.56/0.61 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 22 24 | 2 4 | 5arm 3arm | 1 1 | nd nd | 0.22 0.22 | 4 3 | 2 | 1 | 2 | 2 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------GGCCUCU---------------------------------- | 1 | novel |
| seed | -----------------------GACACAC--------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| ---------------------------------------------------CGGCCTCTGTGTGTTCTC------------------------ | 18 | 1 | |
| ----------------------GGACACACAGGGAACTTG----------------------------------------------------- | 18 | 1 | |
| rat | gtggagagagtcaaaggttagtGGACACACAGGGAACTTGgcaaaaggccaCGGCCTCTGTGTGTTCTCtgggagctgattttagaggtcaca | ||
| ********************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000001699 ENSRNOG00000001261 Ftcd | ||
| rat | ((((..(((((((....((((.((((((((((((....((((.....))))....)))))))))))).))))....))))))).....)))). | 1.000 -36.20 |
| rat | chromosome:20:12482387:12482479:-1 | Same_strand|Intronic_coding|ENSRNOT00000001699|ENSRNOG00000001261 ## ENSRNOG00000001261|protein_coding|Ftcd|Formimidoyltransferase-cyclodeaminase (Formiminotransferase- cyclodeaminase) (FTCD) (58 kDa microtubule-binding protein) [Includes: Glutamate formimidoyltransferase (EC 2.1.2.5) (Glutamate formiminotransferase) (Glutamate formyltransferase); Formimidoylte [Source:UniProtKB/Swiss-Prot;Acc:O88618] |
novel_lenNOK_multiarm_DicerOK_shortStem_bulgeHIGH (1 loci)
sblock7983 [novel_lenNOK_multiarm_DicerOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.012 | no | no | 0.53/0.58 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 2 2 | 12 16 | 5arm 3arm | 1 1 | nd nd | 0.37 0.21 | 5 4 | 2 | 2 | 3 | 1 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------GCACUGG------------- | 1 | novel | |
| seed | ---GAAAGCA------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| -------------------------------------------------------GGCACTGGCTTCCATTCAG-- | 19 | 1 | - | |
| --TGAAAGCATCGGTGCAGAC------------------------------------------------------- | 19 | - | 1 | |
| rat | gcTGAAAGCATCGGTGCAGACacttttccttggtctcttccacaggatgcagaatGGCACTGGCTTCCATTCAGca | |||
| **************************************************************************** | ||||
| rat | (((((((((..((((((.........(((((((......))).)))).........))))))))))....))))). | 0.990 -26.27 | ||
| rat | chromosome:3:76945240:76945315:1 | intergenic |
novel_lenNOK_multiarm_DicerOK_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)
sblock3690 [novel_lenNOK_multiarm_DicerOK_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.107 | no | no | 0.47/0.68 | 18/19/0.00 | 0.0 0.0 | 0.0 0.5 | 1 2 | 0 0 | 1 2 | 0 0 | 2 4 | -3 0 | 5arm_loop 3arm | 1 1 | nd nd | 0.32 0.33 | 4 3 | 3 | 2 | 3 | 1 |
| reads | miRBase family seed | |||
| seed | ------------------------------GGCAUCG--------------- | 2 | novel | |
| seed | ---GAGAUGU------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S2 | |||
| -----------------------------GGGCATCGAGGCATCTCG----- | 18 | 1 | - | |
| --AGAGATGTGTCAGCTTGAC------------------------------- | 19 | 1 | - | |
| -----------------------------GGGCATCGAGGCATCTCGC---- | 19 | - | 1 | |
| rat | ggAGAGATGTGTCAGCTTGACaaaccacaGGGCATCGAGGCATCTCGCaccg | |||
| **************************************************** | ||||
| rat | ((.(((((((.((.((((...........))))...)).)))))))...)). | 0.990 -16.30 | ||
| rat | chromosome:13:12127124:12127175:-1 | intergenic |
novel_lenNOK_multiarm_DicerOK_shortStem_randfoldOK (1 loci)
sblock5871 [novel_lenNOK_multiarm_DicerOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.84/0.89 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 3 3 | 38 27 | 5arm 3arm | 2 2 | nd nd | 0.21 0.26 | 2 3 | 2 | 1 | 2 | 2 |
| reads | miRBase family seed | ||
| seed | ----AGGGGCG------------------------------------------------------------------------------------------------------ | 1 | novel |
| seed | --------------------------------------------------------------------------------------------CCCAACC-------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| -------------------------------------------------------------------------------------------CCCCAACCCCGCCCCCAGG--- | 19 | 1 | |
| ---AAGGGGCGGGGCGGGGGGG------------------------------------------------------------------------------------------- | 19 | 1 | |
| rat | gccAAGGGGCGGGGCGGGGGGGcacctgcctggcgtggggtgctgagatagaagtggaggaaagccccaccctagccccgccttcgcaccgCCCCAACCCCGCCCCCAGGgcg | ||
| ***************************************************************************************************************** | |||
| rat | (((..(((((((((..((((((....(((..((.(((((((.......(((..((((.((....)))))).))))))))))))..))))).))))..)))))))))...))). | 0.720 -65.71 |
| rat | chromosome:19:35336198:35336310:1 | intergenic ## {Repeats: dust 35336203 35336219 0 class=dust,dust 35336261 35336277 0 class=dust} |
novel_lenNOK_multiarm_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH (1 loci)
sblock11247 [novel_lenNOK_multiarm_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.403 | no | no | 0.39/0.58 | 18/23/0.60 | 1.2 0.0 | 0.8 0.0 | 4 1 | 0 0 | 2 1 | 0 0 | 20 42 | 11 -8 | 5arm 3arm_loop | 14 14 | nd nd | 0.43 0.42 | 4 7 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------CCCGUAC------------------------------------------------------------------------------------------ | 3 | novel | |
| seed | ----------------------------------------------------------GCCUUGU----------------------------------------------------- | 1 | novel | |
| seed | --------------------------ACUUGCC------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------------------TCCCGTACTTGCCTAGAAACTCA--------------------------------------------------------------------------- | 23 | - | 2 | |
| ---------------------------------------------------------TGCCTTGTCAGAGGACCCA------------------------------------------ | 19 | - | 1 | |
| --------------------TCCCGTACTTGCCTAGAAAC------------------------------------------------------------------------------ | 20 | - | 1 | |
| -------------------------TACTTGCCTAGAAACTCA--------------------------------------------------------------------------- | 18 | 1 | - | |
| rat | ggtcaagaagtgatgcaccaTCCCGTACTTGCCTAGAAACTCAtgggttctgtgtccTGCCTTGTCAGAGGACCCAtattcttgagagatatgtagtagggttttgtctcagagactc | |||
| ********************************************************************************************************************** | ||||
| rat | ((((..((..(((.((.((((..(((((((....((((....(((((((((.((...........)).))))))))).))))...))).))))..)).)))).)))..))...)))). | 0.460 -28.70 | ||
| rat | chromosome:7:19447878:19447995:1 | intergenic |
novel_lenNOK_multiarm_Multihit_loopOverlap_randfoldOK_nonpairedHIGH (1 loci)
block842897 [novel_lenNOK_multiarm_Multihit_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.37/0.50 | 19/22/0.33 | 1.0 0.0 | 1.0 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 2 11 | -3 -13 | 5arm_loop 5arm_loop_3arm | 25 25 | nd nd | 0.32 0.50 | 2 4 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------ACCUCUA-------------------------- | 1 | novel | |
| seed | ---AUAACAA----------------------------------- | 1 | novel | |
| seed | -----AACAAGG--------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ----TAACAAGGACCTCTACTAT---------------------- | 19 | - | 1 | |
| -----------GACCTCTACTATTGTACAGCCC------------ | 22 | - | 1 | |
| --TATAACAAGGACCTCTACT------------------------ | 19 | 1 | - | |
| rat | gcTATAACAAGGACCTCTACTATTGTACAGCCCccttgtcatagc | |||
| ********************************************* | ||||
| rat | (((((.((((((..((.(((....))).))...)))))).))))) | 1.000 -14.80 | ||
| rat | chromosome:1:49004562:49004606:-1 | intergenic |
novel_lenNOK_multiarm_Multihit_mirtron_bulgeHIGH (1 loci)
sblock2636 [novel_lenNOK_multiarm_Multihit_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.045 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 13 22 | 30 9 | 5arm 3arm | 12 30 | 62 1 | 0.61 0.28 | 11 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------GGCCAAG--------------------------------------------------------------------------------------------- | 1 | novel |
| seed | ---------------------------------------------------------------------------CACACUG-------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| -------------TGGCCAAGCTTTCGATCG----------------------------------------------------------------------------------- | 18 | 1 | |
| --------------------------------------------------------------------------CCACACTGTGCCATGCAA---------------------- | 18 | 1 | |
| rat | ggggccatcatcaTGGCCAAGCTTTCGATCGtcccattgcggagaggctactgggggaacaagattggcaaaccCCACACTGTGCCATGCAAggtgacgggccgatgtggctcc | ||
| ****************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000035575 ENSRNOG00000027662 | ||
| rat | (((((((.((((..((((...........((((((.(((((....(((.(((((((...((....)).....)))))....))))).))))))).))))))))))))))))))) | 0.790 -45.70 |
| rat | chromosome:10:38752109:38752222:1 | Same_strand|Intronic_coding|ENSRNOT00000035575|ENSRNOG00000027662 ## ENSRNOG00000027662|protein_coding|| |
novel_lenNOK_multiarm_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
sblock1440 [novel_lenNOK_multiarm_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.35/0.50 | 19/20/0.38 | 0.7 0.0 0.0 0.0 | 0.3 0.0 0.0 0.0 | 3 2 2 1 | 0 0 0 0 | 2 2 1 1 | 0 0 0 0 | 2 11 27 10 | 33 26 8 24 | 5arm 5arm 3arm 3arm | 33 33 45 45 | nd nd nd nd | 0.45 0.42 0.32 0.35 | 5 3 5 4 | 8 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------CCAGUAA--------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---GUGCUAG------------------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -------------------------------------------------------------------------GGUGUUU-------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------------------------------------GAUAAAC---------------------- | 1 | novel | ||
| seed | -----GCUAGGA---------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ------------------------------------------------------------------------TGGTGTTTTTAGAGTGTGA--------------------------- | 19 | - | - | 2 | |
| -----------ACCAGTAACCTATGGAAGA---------------------------------------------------------------------------------------- | 19 | 1 | - | 1 | |
| --TGTGCTAGGACCAGTAACCT------------------------------------------------------------------------------------------------ | 20 | - | - | 2 | |
| ----TGCTAGGACCAGTAACCTA----------------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| ----------------------------------------------------------------------------------------TGATAAACTTCAGGTGAATG---------- | 20 | - | - | 1 | |
| rat | tgTGTGCTAGGACCAGTAACCTATGGAAGActtcatgagctcataccactctccacctcactttgtggaaggTGGTGTTTTTAGAGTGTGATAAACTTCAGGTGAATGgatgcattca | ||||
| ********************************************************************************************************************** | |||||
| rat | ((.((((.....(((...((((...((((...((((..(((((((((((..(((((........)))))..))))))).....))))))))....))))))))...)))..)))).)) | 1.000 -38.00 | |||
| rat | chromosome:1:51421170:51421287:1 | intergenic |
novel_lenNOK_multiarm_Multihit_shortStem_5varHIGH_nonpairedHIGH (1 loci)
sblock1707 [novel_lenNOK_multiarm_Multihit_shortStem_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.971 | no | no | 0.28/0.47 | 18/25/0.29 | 1.8 0.0 0.0 | 0.0 0.0 0.0 | 5 1 1 | 0 0 0 | 3 1 1 | 0 0 0 | 3 36 39 | 26 -1 -2 | 5arm 5arm_loop 3arm_loop | 14 21 21 | nd nd nd | 0.33 0.47 0.44 | 3 6 5 | 7 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----GCCUAGA--------------------------------------------------------------------------------------------------------- | 3 | novel | |||
| seed | -------------------------------------GGCAUUC------------------------------------------------------------------------ | 1 | novel | |||
| seed | ---------GACCUUC---------------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------------AGGUAUU------------------------------------------------- | 1 | novel | |||
| seed | --------AGACCUU----------------------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T3S2 | T4S2 | T5S1 | |||
| ---AGCCTAGACCTTCAGACTTAACTGT---------------------------------------------------------------------------------------- | 25 | 1 | - | - | 2 | |
| --------AGACCTTCAGACTTAACTGT---------------------------------------------------------------------------------------- | 20 | - | - | - | 1 | |
| -----------------------------------------------------------AAGGTATTATCTTGTCTA--------------------------------------- | 18 | - | 1 | - | - | |
| ------------------------------------TGGCATTCAAGTAGCACCA------------------------------------------------------------- | 19 | - | - | - | 1 | |
| -------TAGACCTTCAGACTTAACTGT---------------------------------------------------------------------------------------- | 21 | - | - | 1 | - | |
| rat | cacAGCCTAGACCTTCAGACTTAACTGTaaaacaagTGGCATTCAAGTAGCACCAtgaaAAGGTATTATCTTGTCTAagactcaattatttgcgtagtgaaatgaagttagagtgg | |||||
| ******************************************************************************************************************** | ||||||
| rat | (((...((((..(((((...(((..((((((...(((......(((((((.(((.......))).))).))))......)))......))))))...)))..))))))))).))). | 0.450 -16.00 | ||||
| rat | chromosome:1:52867489:52867604:1 | intergenic |
novel_lenNOK_multiarm_loopOverlap_mirtron_bulgeHIGH (1 loci)
sblock10056 [novel_lenNOK_multiarm_loopOverlap_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.154 | no | no | 0.53/0.68 | 19/20/0.33 | 0.0 0.0 | 0.5 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 20 22 | -5 -2 | 5arm_loop_3arm 3arm_loop | 1 1 | 0 17 | 0.30 0.37 | 4 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------GCUCUAA-------------------------------------------------- | 2 | novel |
| seed | --------------------------------------GCGGCAG--------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| -------------------------------------AGCGGCAGTTAGCGTGGCG---------------------- | 19 | 1 | |
| --------------------CGCTCTAAACTTCCGGAAGC-------------------------------------- | 20 | 1 | |
| --------------------CGCTCTAAACTTCCGGAAG--------------------------------------- | 19 | 1 | |
| rat | gggcagcgttggagaagctgCGCTCTAAACTTCCGGAAGCGGCAGTTAGCGTGGCGcgggcagttgatctaaaggtct | ||
| ****************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000009086 ENSRNOG00000006744 NP_001100216.1 | ||
| rat | ((((....(((((..((((((((.(((((((.(((....))).))))....))).))..))))))..)))))..)))) | 0.460 -26.90 |
| rat | chromosome:6:109327379:109327456:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000015574|ENSRNOG00000006744 ## ENSRNOG00000006744|protein_coding|NP_001100216.1|acylphosphatase 1, erythrocyte (common) type [Source:RefSeq_peptide;Acc:NP_001100216] |
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