other hairpins
novel_lenNOK_multiarm_loopOverlap_mirtron_bulgeHIGH (1 loci)
novel_lenNOK_multiarm_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH (1 loci)
sblock2553 [novel_lenNOK_multiarm_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.078 | no | no | 0.53/0.55 | 19/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 2 10 | 0 -11 | 5arm 3arm_loop | 1 1 | 21 2 | 0.41 0.58 | 4 10 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---CCCAGUA------------------------------------------- | 1 | novel | |
| seed | -------------------------UUAUACC--------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S2 | |||
| --TCCCAGTATTGGAGAGGACCAG----------------------------- | 22 | 1 | - | |
| ------------------------CTTATACCTGTCTGGCCTC---------- | 19 | - | 1 | |
| rat | acTCCCAGTATTGGAGAGGACCAGCTTATACCTGTCTGGCCTCaggttggagt | |||
| ***************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000054970 ENSRNOG00000036697 Mafg | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>> | ENSRNOT00000054952 ENSRNOG00000036684 Pcyt2 | |||
| rat | (((((....(((...((((.((((...........)))))))).))).))))) | 0.470 -14.60 | ||
| rat | chromosome:10:110002703:110002755:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000054970|ENSRNOG00000036697 ## Same_strand|Intronic_coding|ENSRNOT00000054952|ENSRNOG00000036684 ## Same_strand|Boundary_non-coding|ENSRNOT00000051462|ENSRNOG00000036697 ## ENSRNOG00000036697|protein_coding|Mafg|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G [Source:RefSeq_peptide;Acc:NP_071781] ## ENSRNOG00000036684|protein_coding|Pcyt2|Ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14) (Phosphorylethanolamine transferase) (CTP:phosphoethanolamine cytidylyltransferase). [Source:UniProtKB/Swiss-Prot;Acc:O88637] |
novel_lenNOK_multiarm_mirtron_nonpairedHIGH_bulgeHIGH (1 loci)
sblock7454 [novel_lenNOK_multiarm_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.262 | no | no | 0.53/0.58 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 8 27 | 18 1 | 5arm 3arm | 1 1 | 43 1 | 0.47 0.42 | 4 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------AAAGCCC---------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------UCGGCAU-------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| ----------------------------------------------------CTCGGCATTAACTTGGAGC--------------------------- | 19 | - | 1 | |
| --------AAAAGCCCCGATGGTGACC----------------------------------------------------------------------- | 19 | 1 | - | |
| rat | cgggagatAAAAGCCCCGATGGTGACCgtgagtgatggcaagaggatttagcCTCGGCATTAACTTGGAGCggagtgcaggggggcggtgaggcgccc | |||
| ************************************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000018554 ENSRNOG00000013694 NP_001101295.1 | |||
| rat | .(((........(((((..((....((((((((....((..((((......)))).))....))))...))))....))..))))).........))) | 0.930 -32.33 | ||
| rat | chromosome:3:8229761:8229858:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000018554|ENSRNOG00000013694 ## Same_strand|Boundary_non-coding|ENSRNOT00000018554|ENSRNOG00000013694 ## ENSRNOG00000013694|protein_coding|NP_001101295.1|netrin G2 [Source:RefSeq_peptide;Acc:NP_001101295] ## {SimpF: oe = 0.75 -1 CpG} |
novel_lenNOK_multiarm_randfoldOK_bulgeHIGH (1 loci)
sblock5909 [novel_lenNOK_multiarm_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.47/0.67 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 31 6 | 4 26 | 5arm 3arm | 1 1 | nd nd | 0.28 0.37 | 4 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------GGCGGGA------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------------------------GAAGCUC----------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S2 | |||
| ---------------------------------------------------------------------------------------AGAAGCTCTAAGTCCGCAA------ | 19 | 1 | - | |
| -------------------------------AGGCGGGATCTCACCGGA--------------------------------------------------------------- | 18 | - | 1 | |
| rat | tgtgagaggctggactgactgggcggggaggAGGCGGGATCTCACCGGAgggcagagcttcgtcccaagagtgggatcttgcaaaatAGAAGCTCTAAGTCCGCAAtttacg | |||
| **************************************************************************************************************** | ||||
| rat | .(((((..((.(((((....((((.........((((((((((((....((((........)))).....)))))))))))).........))))..)))))))..))))). | 0.960 -43.47 | ||
| rat | chromosome:19:47102102:47102213:1 | intergenic |
novel_lenNOK_multiarm_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
sblock8281 [novel_lenNOK_multiarm_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 22 8 | 15 35 | 5arm 3arm | 3 3 | nd nd | 0.50 0.33 | 4 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------------------------------GGGAAUG------------------ | 1 | novel | |
| seed | -----------------------GGCUAAU------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S1 | |||
| ----------------------AGGCTAATGTGCAAGGAA-------------------------------------------------------------------------------- | 18 | 1 | - | |
| ----------------------------------------------------------------------------------------------AGGGAATGAAGGAATGGA-------- | 18 | - | 1 | |
| rat | ctacctgtccattgtttctttcAGGCTAATGTGCAAGGAAatcacattatgtcttgagaaagagagggggggttggtgaagggaaattagaatgAGGGAATGAAGGAATGGAggggaagg | |||
| ************************************************************************************************************************ | ||||
| rat | ((.(((.((((((.(((((((((..(((((...((....((((...((...((((....))))...))..))))..)).......)))))..)))))))....)).)))))).))).)). | 0.830 -29.60 | ||
| rat | chromosome:3:150460944:150461063:1 | intergenic ## {Repeats: GA-rich 2 89 1 class=Low_complexity,trf 21 37 0 class=trf,dust 150461093 150461111 0 class=dust,GA-rich 2 9 1 class=Low_complexity} |
novel_lenNOK_multiarm_shortStem_5varHIGH (1 loci)
sblock9154 [novel_lenNOK_multiarm_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.034 | no | no | 0.25/0.54 | 19/24/0.67 | 2.0 0.0 0.0 0.0 1.5 | 1.5 0.0 0.0 0.0 0.8 | 2 1 1 1 4 | 0 0 0 0 0 | 1 1 1 1 1 | 0 0 0 0 0 | 1 17 27 36 4 | 24 7 2 -12 14 | 5arm 5arm 5arm 5arm_loop_3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.21 0.42 0.42 0.38 0.32 | 2 5 5 5 3 | 9 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------GAGACUU--------------------- | 3 | novel |
| seed | ----------------------------GGCACAC------------------------------------------------------------ | 1 | novel |
| seed | ------------------ACAUUCC---------------------------------------------------------------------- | 1 | novel |
| seed | --UCCAACA-------------------------------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------------------------------UGUAAUU--------------- | 1 | novel |
| seed | ------ACAGUAA---------------------------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------CAGUUUU--------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------------------------------------TGAGACTTGTAATTGTTCACTG------- | 22 | 3 | |
| ---------------------------TGGCACACCTCAGTTTTCT------------------------------------------------- | 19 | 1 | |
| -----AACAGTAACATCTACATTC----------------------------------------------------------------------- | 19 | 1 | |
| ------------------------------------------------------------------------TTGTAATTGTTCACTGGCT---- | 19 | 1 | |
| -----------------TACATTCCGCTGGCACACCTCAGT------------------------------------------------------ | 24 | 1 | |
| -TTCCAACAGTAACATCTACA-------------------------------------------------------------------------- | 20 | 1 | |
| ------------------------------------TCAGTTTTCTGTTAATATAGAAAG----------------------------------- | 24 | 1 | |
| rat | gTTCCAACAGTAACATCTACATTCCGCTGGCACACCTCAGTTTTCTGTTAATATAGAAAGggccaaTGAGACTTGTAATTGTTCACTGGCTagca | ||
| *********************************************************************************************** | |||
| rat | (((....((((((((..((((.((((.((((...(((.....((((((....))))))))))))).)).))..))))..)))).))))...))). | 0.930 -23.50 |
| rat | chromosome:4:164284623:164284717:1 | intergenic |
novel_lenNOK_multiarm_shortStem_5varHIGH_loopOverlap_bulgeHIGH (1 loci)
block934006 [novel_lenNOK_multiarm_shortStem_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.033 | no | no | 0.56/0.67 | 18/20/0.17 | 0.0 1.8 | 0.0 1.2 | 1 5 | 0 0 | 1 3 | 0 0 | 0 4 | 5 -5 | 5arm 5arm_loop_3arm | 2 8 | nd nd | 0.44 0.22 | 8 4 | 6 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------ACGCGGA-------------------------------- | 3 | novel | |||
| seed | -GUCUCAU------------------------------------------ | 1 | novel | |||
| seed | -----CAUUGAA-------------------------------------- | 1 | novel | |||
| seed | --------UGAACGC----------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S2 | T5S2 | |||
| ----------AACGCGGAGCCAGCTCTC---------------------- | 18 | - | 1 | 2 | - | |
| ----TCATTGAACGCGGAGCCAGC-------------------------- | 20 | 1 | - | - | - | |
| GGTCTCATTGAACGCGGA-------------------------------- | 18 | - | - | - | 1 | |
| -------TTGAACGCGGAGCCAGCTC------------------------ | 19 | 1 | - | - | - | |
| rat | GGTCTCATTGAACGCGGAGCCAGCTCTCtggtctctgtgtggtctcgcca | |||||
| ************************************************** | ||||||
| rat | (((........((((((((((((....)))).))))))))......))). | 0.940 -19.44 | ||||
| rat | chromosome:1:255312648:255312697:-1 | intergenic |
novel_lenNOK_multiarm_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)
block1060974 [novel_lenNOK_multiarm_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.029 | no | no | 0.58/0.63 | 19/22/0.33 | 0.0 2.0 | 0.0 1.6 | 1 5 | 0 0 | 1 2 | 0 0 | 22 3 | -14 -1 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.42 0.45 | 4 5 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------GCACACU--------------- | 3 | novel | |
| seed | ------------------------------GCUCUGC-------------------- | 2 | novel | |
| seed | -----------------------GAGCUCU--------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----------------------------------TGCACACTGGCACCCAAGA---- | 19 | - | 2 | |
| -----------------------------TGCTCTGCACACTGGCACC--------- | 19 | 1 | - | |
| ----------------------------------TGCACACTGGCACCCAAGAG--- | 20 | - | 1 | |
| -----------------------------TGCTCTGCACACTGGCACCCAA------ | 22 | - | 1 | |
| ----------------------TGAGCTCTGCTCTGCACAC---------------- | 19 | - | 1 | |
| rat | tgcctctcgccaaagaaccagtTGAGCTCTGCTCTGCACACTGGCACCCAAGAGgca | |||
| ********************************************************* | ||||
| rat | .((((((.((((........((.((((...)))).))....)))).....)))))). | 0.860 -17.30 | ||
| rat | chromosome:20:5523470:5523526:-1 | intergenic |
novel_lenNOK_multiarm_shortStem_5varHIGH_nonpairedHIGH (1 loci)
sblock6815 [novel_lenNOK_multiarm_shortStem_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.656 | no | no | 0.56/0.72 | 18/22/0.17 | 1.5 0.0 0.0 | 1.5 0.0 0.0 | 4 1 1 | 0 0 0 | 4 1 1 | 0 0 0 | 0 41 19 | 24 -15 1 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.39 0.44 0.45 | 3 6 4 | 6 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---CCGGCGA---------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | ----------------------------------------------------CCAACUG--------------------------------- | 1 | novel | ||||
| seed | -AACCGGC------------------------------------------------------------------------------------ | 1 | novel | ||||
| seed | ------------------------------------------AGCCGUA------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T5S1 | T5S2 | |||
| --ACCGGCGAGCGGATCCTG------------------------------------------------------------------------ | 18 | - | - | 1 | 1 | 1 | |
| GAACCGGCGAGCGGATCC-------------------------------------------------------------------------- | 18 | - | 1 | - | - | - | |
| -----------------------------------------GAGCCGTAACTCCAACTG--------------------------------- | 18 | - | - | - | - | 1 | |
| ---------------------------------------------------TCCAACTGTGTCCCCAGCAACC------------------- | 22 | 1 | - | - | - | - | |
| rat | GAACCGGCGAGCGGATCCTGagccagtgccctggacagccgGAGCCGTAACTCCAACTGTGTCCCCAGCAACCacggccagcccggcatgga | ||||||
| ******************************************************************************************** | |||||||
| ................................................................................>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000051678 ENSRNOG00000030153 | ||||||
| rat | ...(((((...(((...(((.(((.(((..((((((((..((((......))))..))))....))))....))))))))).))))).))). | 0.950 -29.90 | |||||
| rat | chromosome:20:10523740:10523831:-1 | intergenic |
novel_lenNOK_multiarm_shortStem_5varHIGH_randfoldOK_nonpairedHIGH (1 loci)
sblock8125 [novel_lenNOK_multiarm_shortStem_5varHIGH_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.45/0.56 | 18/20/0.12 | 0.0 1.1 | 0.0 0.7 | 1 7 | 0 0 | 1 4 | 0 0 | 22 2 | 13 37 | 5arm 3arm | 1 1 | nd nd | 0.55 0.37 | 5 3 | 8 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------------------------------------------------------------CCUCAGA------------- | 4 | novel | |||
| seed | --------------------------------------------------------------------------------------------------AACCUCA--------------- | 3 | novel | |||
| seed | -----------------------UGCCAAG------------------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T2S2 | T5S1 | |||
| ---------------------------------------------------------------------------------------------------ACCTCAGAAGCAGACCCA--- | 18 | 2 | 1 | - | - | |
| -------------------------------------------------------------------------------------------------TAACCTCAGAAGCAGACCC---- | 19 | - | - | - | 3 | |
| ----------------------TTGCCAAGCATGACTCATTC------------------------------------------------------------------------------ | 20 | 1 | - | - | - | |
| ---------------------------------------------------------------------------------------------------ACCTCAGAAGCAGACCCAT-- | 19 | - | - | 1 | - | |
| rat | agcaaggaatgcttactgtagcTTGCCAAGCATGACTCATTCcctggagcttgttaaaccagcatgctccaggctccagctcattctaactgtgttaTAACCTCAGAAGCAGACCCATgc | |||||
| ************************************************************************************************************************ | ||||||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000015556 ENSRNOG00000011649 NP_001102060.1 | |||||
| rat | .(((.((..(((((.(((((((......((.((((((.....((((((((.((((.....)))).))))))))....)).)))).))......))))......))))))))...)).))) | 0.430 -35.10 | ||||
| rat | chromosome:3:107815101:107815220:1 | Opposite_strand|Intronic_coding|ENSRNOT00000015556|ENSRNOG00000011649 ## ENSRNOG00000011649|protein_coding|NP_001102060.1|erythrocyte protein band 4.2 [Source:RefSeq_peptide;Acc:NP_001102060] |
novel_lenNOK_multiarm_shortStem_bulgeHIGH (1 loci)
sblock11268 [novel_lenNOK_multiarm_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.042 | no | no | 0.21/0.33 | 18/19/0.00 | 0.0 0.0 | 0.0 0.5 | 1 4 | 0 0 | 1 1 | 0 0 | 35 4 | -1 37 | 5arm_loop 3arm | 1 3 | nd nd | 0.26 0.26 | 2 4 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------------------------------CUUUUUG--------------- | 4 | novel | |
| seed | ------------------------------------CCUUAAU--------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S2 | |||
| -----------------------------------------------------------------------------------------------TCTTTTTGGCCTTTTTCA----- | 18 | 2 | - | |
| -----------------------------------------------------------------------------------------------TCTTTTTGGCCTTTTTCAA---- | 19 | 2 | - | |
| -----------------------------------TCCTTAATAAATAAAAGGT---------------------------------------------------------------- | 19 | - | 1 | |
| rat | gccatggaaccaaagggacagcataggatagttttTCCTTAATAAATAAAAGGTaattcctttatttctaagatgaggaccacaccagccatcttTCTTTTTGGCCTTTTTCAAggcg | |||
| ********************************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000011424 ENSRNOG00000008507 Cradd | |||
| rat | (((.((((((((((((((.((.((.((...((...((((((..((((.(((((.....)))))))))......))))))....))...)))))).)))))))))....))))).))). | 0.580 -28.60 | ||
| rat | chromosome:7:32460962:32461079:1 | Opposite_strand|Intronic_coding|ENSRNOT00000011424|ENSRNOG00000008507 ## ENSRNOG00000008507|protein_coding|Cradd|CASP2 and RIPK1 domain containing adaptor with death domain Gene [Source:MGI Symbol;Acc:MGI:1336168] |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 31198 | Next page | Page 31204 |
©2008 InteRNA Genomics B.V.