other hairpins
novel_lenNOK_multiarm_shortStem_bulgeHIGH (1 loci)
novel_lenNOK_multiarm_shortStem_nonpairedHIGH_bulgeHIGH (1 loci)
sblock3636 [novel_lenNOK_multiarm_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.033 | no | no | 0.21/0.58 | 19/24/0.44 | 0.8 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 | 5 1 1 1 1 | 0 0 0 0 0 | 4 1 1 1 1 | 0 0 0 0 0 | 0 11 23 28 0 | 30 23 6 3 33 | 5arm 5arm 5arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.42 0.47 0.42 0.38 0.57 | 6 6 5 4 6 | 9 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----GACUUCU---------------------------------------------------------------------------------------------------- | 4 | novel | |||
| seed | -------------------------------------------------------------------------------------------UUCCCAA-------------- | 1 | novel | |||
| seed | -------------------------------------------------------------UCUCCUA-------------------------------------------- | 1 | novel | |||
| seed | ------------UUACCUU--------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ------------------------AGUAAUA--------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -CACUGAC-------------------------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S1 | T5S1 | |||
| ----TGACTTCTTTACCTTTGAA----------------------------------------------------------------------------------------- | 19 | 1 | 1 | - | 2 | |
| ------------------------------------------------------------TTCTCCTACCCAAGACCCTGCAGG---------------------------- | 24 | - | - | - | 1 | |
| -----------TTTACCTTTGAATAGTAAT---------------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| -----------------------TAGTAATAGGGTTGAGGGTGAAAA----------------------------------------------------------------- | 24 | - | - | - | 1 | |
| ------------------------------------------------------------------------------------------TTTCCCAAGAGACACATCAGGG | 22 | - | - | - | 1 | |
| TCACTGACTTCTTTACCTTTGAA----------------------------------------------------------------------------------------- | 23 | - | - | 1 | - | |
| rat | TCACTGACTTCTTTACCTTTGAATAGTAATAGGGTTGAGGGTGAAAAtgagggaagtcccTTCTCCTACCCAAGACCCTGCAGGcggttcTTTCCCAAGAGACACATCAGGG | |||||
| **************************************************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | |||||
| rat | ...((((..(((((......((((.((..(((((((..(((((.....(((((....)))))....)))))..)))))))...)).)))).......)))))....)))).. | 0.900 -34.82 | ||||
| rat | chromosome:12:43061645:43061756:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
novel_lenNOK_shortStem_5varHIGH_randfoldOK_nonpairedHIGH (1 loci)
block714638 [novel_lenNOK_shortStem_5varHIGH_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.58/0.58 | 19/19/0.00 | 1.5 | 1.5 | 2 | 0 | 2 | 0 | 0 | 22 | 5arm | 1 | nd | 0.32 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----GGGUGGU----------------------------------------------------------------------------- | 1 | novel | |
| seed | -AGUGGGU-------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S2 | |||
| GAGTGGGTGGTTCAGTGGT--------------------------------------------------------------------- | 19 | - | 1 | |
| ---TGGGTGGTTCAGTGGTCTG------------------------------------------------------------------ | 19 | 1 | - | |
| rat | GAGTGGGTGGTTCAGTGGTCTGttcaggagcagggcaggtgtcctgtgggagattggccttgctaaggttagatgccaccgtctactt | |||
| **************************************************************************************** | ||||
| rat | ((((((..(((...((.(((((.((...((((((((..((.(((....))).))..))))))))..)).))))))).)))..)))))) | 0.980 -36.60 | ||
| rat | chromosome:18:66378539:66378626:-1 | intergenic |
novel_lenNOK_shortStem_loopOverlap_mirtron_nonpairedHIGH (1 loci)
block1197689 [novel_lenNOK_shortStem_loopOverlap_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.258 | no | no | 0.58/0.58 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | -3 | 3arm_loop | 1 | 1 | 0.32 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------UCCAACC------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| ------------------------------ATCCAACCCCCTCCATCCA-- | 19 | 1 | |
| rat | cctggttatgaagaggcctgtaataaatgtATCCAACCCCCTCCATCCAgg | ||
| *************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>> | ENSRNOT00000050476 ENSRNOG00000028765 Ttc24 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>> | ENSRNOT00000056919 ENSRNOG00000028765 Ttc24 | ||
| rat | (((((..(((.((.((..((.............))..)).)).)))))))) | 1.000 -9.32 |
| rat | chromosome:2:180139375:180139425:-1 | Same_strand|Intronic_coding|ENSRNOT00000050476|ENSRNOG00000028765 ## ENSRNOG00000028765|protein_coding|Ttc24|tetratricopeptide repeat domain 24 Gene [Source:MGI Symbol;Acc:MGI:2443841] |
novel_lenNOK_shortStem_loopOverlap_mirtron_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
block220836 [novel_lenNOK_shortStem_loopOverlap_mirtron_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.61/0.61 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | -3 | 3arm_loop | 1 | 1 | 0.33 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------CCCCACC------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| ----------------------------------TCCCCACCTTCCTCCACA--- | 18 | 1 | |
| rat | tactgtggagattcctacctcactgtggtctctcTCCCCACCTTCCTCCACAgtg | ||
| ******************************************************* | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000030497 ENSRNOG00000001448 Hip1 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000001967 ENSRNOG00000001448 Hip1 | ||
| rat | ((((((((((..............((((.........))))....)))))))))) | 0.810 -15.07 |
| rat | chromosome:12:22380454:22380508:1 | Same_strand|Intronic_coding|ENSRNOT00000001967|ENSRNOG00000001448 ## ENSRNOG00000001448|protein_coding|Hip1|HIP1 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q8VHU1] |
novel_lenNOK_shortStem_mirtron_randfoldOK_nonpairedHIGH (1 loci)
block383587 [novel_lenNOK_shortStem_mirtron_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 22 | 5arm | 1 | 1 | 0.32 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----CACUUGC----------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ----TCACTTGCTTACGGCTCCA------------------------------------------------------------------------ | 19 | 1 | |
| rat | tccgTCACTTGCTTACGGCTCCAgacccgcggcaccagctccggtctgcaccgagggcggctgtcgcagggactctgggccgttgtcatggagga | ||
| *********************************************************************************************** | |||
| +++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000031633 ENSRNOG00000002181 LOC360912 | ||
| rat | (((..((...((..(((((.((((((((((((((((.((((((((....)))).)))))).)))))).)))..)))))))))).))..))..))) | 1.000 -49.10 |
| rat | chromosome:14:10102613:10102707:1 | Same_strand|Boundary_non-coding|ENSRNOT00000002974|ENSRNOG00000002181 ## Same_strand|Intronic_non-coding|ENSRNOT00000031633|ENSRNOG00000002181 ## ENSRNOG00000002181|protein_coding|LOC360912| |
novel_multiarm_5varHIGH_nonpairedHIGH (1 loci)
sblock165 [novel_multiarm_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.082 | no | no | 0.41/0.58 | 20/24/1.00 | 1.1 0.0 0.0 | 0.0 0.0 0.0 | 8 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 5 15 35 | 27 16 -4 | 5arm 5arm 3arm_loop | 3 3 17 | nd nd nd | 0.39 0.50 0.41 | 3 6 6 | 10 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------CACUGAU------------------------------------------------------------------------------------------------ | 5 | novel |
| seed | ------AGCCACU--------------------------------------------------------------------------------------------------- | 3 | novel |
| seed | --------------------------------------------------------AGGUUGU------------------------------------------------- | 1 | novel |
| seed | ----------------GGAAACA----------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------CCACTGATGGAAACAGACTC------------------------------------------------------------------------------------ | 20 | 5 | |
| -----CAGCCACTGATGGAAACAGACTC------------------------------------------------------------------------------------ | 23 | 3 | |
| ---------------TGGAAACAGACTCGCCCTCTCCTC------------------------------------------------------------------------- | 24 | 1 | |
| -------------------------------------------------------TAGGTTGTCTTCTGTGTTCTCA----------------------------------- | 22 | 1 | |
| rat | ttagcCAGCCACTGATGGAAACAGACTCgccctctcctcatgcacagagagataataggttgtcttctgtgttctcattgatgcttctgttctgcctgaagctgcttgttga | ||
| **************************************************************************************************************** | |||
| rat | (((((.(((..((...((.((((((...((..((.......(((((((.((((((....))))))))))))).......)).)).))))))...))...))..))).))))) | 0.970 -30.54 |
| rat | chromosome:1:49000601:49000712:-1 | intergenic |
novel_multiarm_5varHIGH_randfoldOK (1 loci)
sblock8047 [novel_multiarm_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.22/0.61 | 18/23/0.71 | 2.0 0.0 0.0 1.0 | 2.0 0.0 0.0 0.5 | 2 1 2 2 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 25 34 7 1 | 4 3 27 33 | 5arm 3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.30 0.22 0.48 0.37 | 6 3 6 6 | 7 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------------GCCAUUG-------------------- | 2 | novel |
| seed | ------------------------------------------------------------------------------------------------GUGCGCU-------------- | 1 | novel |
| seed | --------------------------------------------------------------------------------------------------GCGCUCU------------ | 1 | novel |
| seed | ------------------------------------------------------------------GAGUUGC-------------------------------------------- | 1 | miR-219 |
| seed | --------------------------GGUUAUC------------------------------------------------------------------------------------ | 1 | novel |
| seed | ------------------------------AUCUAUU-------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------------------------------------------------------------------TGCCATTGTGCGCTCTCTCTG------- | 21 | 2 | |
| -----------------------------TATCTATTCTTTAAGAACATTTC----------------------------------------------------------------- | 23 | 1 | |
| -----------------------------------------------------------------------------------------------TGTGCGCTCTCTCTGCTTCA-- | 20 | 1 | |
| -------------------------TGGTTATCTATTCTTTAAGAACA--------------------------------------------------------------------- | 23 | 1 | |
| -----------------------------------------------------------------TGAGTTGCCCGAGGATGG---------------------------------- | 18 | 1 | |
| -------------------------------------------------------------------------------------------------TGCGCTCTCTCTGCTTCAG- | 19 | 1 | |
| rat | tctgaagtcagtgctggcttctttgTGGTTATCTATTCTTTAAGAACATTTCaaacccctcagttTGAGTTGCCCGAGGATGGatggccTGCCATTGTGCGCTCTCTCTGCTTCAGg | ||
| ********************************************************************************************************************* | |||
| rat | .(((((((.(((((((((........((((((((((((((......((.(((((((......))))))).))...)))))))))))))).))))....)))))......))))))). | 0.990 -39.20 |
| rat | chromosome:3:76965834:76965950:1 | intergenic |
novel_multiarm_DicerNOK_5varHIGH_bulgeHIGH (1 loci)
sblock3648 [novel_multiarm_DicerNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.133 | no | no | 0.58/0.65 | 19/22/0.83 | 0.0 0.0 2.5 | 0.0 0.0 2.0 | 1 1 4 | 0 0 0 | 1 1 3 | 0 0 0 | 32 33 12 | 2 -11 1 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.47 0.62 0.27 | 5 10 4 | 6 | 3 | 5 | 13 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------------GCUAGCC----------------------------- | 2 | novel | ||
| seed | ------------------------------------------------------------------GCCAUGC---------------------------------- | 1 | novel | ||
| seed | ---------------------------------AGACUGG------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------------------CCCUCCA------------------------ | 1 | novel | ||
| seed | ------------------------------------------------------ACCCCUC---------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T4S1 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------------TGCTAGCCCTCCACACTTACCC--------------- | 22 | - | 2 | - | |
| -----------------------------------------------------TACCCCTCACTGCGCCATGCT--------------------------------- | 21 | - | 1 | - | |
| --------------------------------GAGACTGGCTGGCTAAAGC-------------------------------------------------------- | 19 | - | 1 | - | |
| -----------------------------------------------------------------CGCCATGCTAGCCCTCCACACT-------------------- | 22 | 1 | - | - | |
| ---------------------------------------------------------------------------GCCCTCCACACTTACCCCGT------------ | 20 | - | - | 1 | |
| rat | catctccaccacagagtagggggcagacaagaGAGACTGGCTGGCTAAAGCgcTACCCCTCACTGCGCCATGCTAGCCCTCCACACTTACCCCGTagaagcgagatg | ||||
| *********************************************************************************************************** | |||||
| rat | ((((((............((((..((....(((.....(((((((....((((...........))))...))))))))))....))..))))........)))))) | 0.430 -32.95 | |||
| rat | chromosome:12:44301253:44301359:1 | intergenic |
novel_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
sblock688 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.29/0.62 | 21/23/1.00 | 2.0 0.0 0.0 | 2.5 0.0 0.0 | 2 1 1 | 0 0 0 | 2 1 1 | 0 0 0 | 0 37 17 | 31 -5 15 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.43 0.33 0.48 | 6 4 4 | 4 | 2 | 0 | 19 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------------------UACAUGC------------------------------ | 1 | novel | |
| seed | -----GUUCUUA----------------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -GUAUGUU--------------------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------CUCUGGA-------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| ---------------------------------------------------------------------------------TTACATGCTTTTAAAGGATCT----------------- | 21 | 1 | - | |
| ----TGTTCTTAGGTGAAGAGTTTTCC-------------------------------------------------------------------------------------------- | 23 | - | 1 | |
| -------------------------------------------------------------TCTCTGGACCAGGCTGCCACT------------------------------------- | 21 | 1 | - | |
| TGTATGTTCTTAGGTGAAGAGT------------------------------------------------------------------------------------------------- | 22 | 1 | - | |
| rat | TGTATGTTCTTAGGTGAAGAGTTTTCCagaaaggcttctgagtgggccacctaagtcctctTCTCTGGACCAGGCTGCCACTTACATGCTTTTAAAGGATCTtaatttcttctgaacat | |||
| *********************************************************************************************************************** | ||||
| rat | ...((((((......((((((...(((..((((((...(((((.(((..(((..((((........)))).)))..))))))))...))))))...))).......)))))).)))))) | 1.000 -35.70 | ||
| rat | chromosome:1:124842689:124842807:-1 | intergenic |
novel_multiarm_DicerNOK_5varHIGH_nonpairedHIGH (1 loci)
sblock5518 [novel_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.325 | no | no | 0.39/0.58 | 18/22/0.75 | 2.0 0.0 0.5 0.0 | 3.0 0.0 0.0 0.0 | 2 1 4 1 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 17 40 27 0 | 4 -12 0 31 | 5arm 5arm_loop_3arm 3arm 3arm | 8 8 8 8 | nd nd nd nd | 0.35 0.47 0.32 0.65 | 3 5 3 6 | 8 | 4 | -1 | 0 |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------GCAAUGC---------------------------------------- | 2 | novel | |||
| seed | -----------------------------------------------------GGCAAUG----------------------------------------- | 2 | novel | |||
| seed | -----------------------------------------UGGCCUC----------------------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------------------------------------UUGACAG---------- | 1 | novel | |||
| seed | ----------------------UGCUUCA------------------------------------------------------------------------ | 1 | novel | |||
| seed | ------------------CCCGUGC---------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S2 | T4S1 | T5S1 | T5S2 | |||
| ----------------------------------------------------AGGCAATGCTAAACACCAGGAC--------------------------- | 22 | 2 | - | - | - | |
| -----------------------------------------------------GGCAATGCTAAACACCAGGAC--------------------------- | 21 | - | 2 | - | - | |
| ---------------------GTGCTTCAGTGTGTGTAAACTG---------------------------------------------------------- | 22 | - | - | 1 | - | |
| -----------------------------------------------------------------------------------CTTGACAGTGCTGTTTTA | 18 | - | 1 | - | - | |
| ----------------------------------------CTGGCCTCTGACAGGCAAT------------------------------------------ | 19 | - | - | - | 1 | |
| -----------------ACCCGTGCTTCAGTGTGTGT---------------------------------------------------------------- | 20 | - | - | 1 | - | |
| rat | cagaaacaagaagactcACCCGTGCTTCAGTGTGTGTAAACTGGCCTCTGACAGGCAATGCTAAACACCAGGACggaactattCTTGACAGTGCTGTTTTA | |||||
| ***************************************************************************************************** | ||||||
| rat | (((...((((((.......((((.((...((((..(((.....((((.....))))..)))...)))).)).)))).....))))))......)))..... | 0.910 -23.50 | ||||
| rat | chromosome:18:63216453:63216553:-1 | intergenic |
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