other hairpins
novel_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
novel_multiarm_DicerNOK_mirtron_bulgeHIGH (1 loci)
sblock10834 [novel_multiarm_DicerNOK_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.031 | no | no | 0.50/0.55 | 21/24/1.00 | 0.7 0.8 | 1.3 0.5 | 3 4 | 0 0 | 3 2 | 0 0 | 26 24 | 5 3 | 5arm 3arm | 1 1 | 41 0 | 0.27 0.24 | 4 4 | 7 | 4 | -2 | -1 |
| reads | miRBase family seed | |||||
| seed | ---------------------------UGGUGGU--------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ---------------------------------------------------------------------ACUGAUU--------------------------------------- | 2 | novel | |||
| seed | -----------------------------------------------------------------------UGAUUGU------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------------------CACUGAU---------------------------------------- | 1 | novel | |||
| seed | -----------------------------GUGGUGA------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------CACTGATTGTCCTCTTGCCAC-------------------------- | 21 | 2 | - | - | - | |
| ----------------------------GGTGGTGAAGGGGAAAAGCAGT----------------------------------------------------------------- | 22 | - | - | 1 | - | |
| -------------------------------------------------------------------ACACTGATTGTCCTCTTGCCAC-------------------------- | 22 | 1 | - | - | - | |
| ----------------------------------------------------------------------CTGATTGTCCTCTTGCCACAG------------------------ | 21 | - | - | - | 1 | |
| --------------------------TTGGTGGTGAAGGGGAAAAGCAGT----------------------------------------------------------------- | 24 | - | 1 | - | - | |
| --------------------------TTGGTGGTGAAGGGGAAAAGCA------------------------------------------------------------------- | 22 | 1 | - | - | - | |
| rat | gcaggcattctttggatgggcctcccTTGGTGGTGAAGGGGAAAAGCAGTaggagaaccaagaactcACACTGATTGTCCTCTTGCCACAGttgaccatcaatgaggctgctgcc | |||||
| ******************************************************************************************************************* | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000057745 ENSRNOG00000008415 Nab2 | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000011435 ENSRNOG00000008415 Nab2 | |||||
| rat | (((.(((..(((..(((((..........(((((.(((((((....((((..(((.........)))..))))....))))))))))))......)))))...)))..)))))). | 0.740 -41.69 | ||||
| rat | chromosome:7:67646107:67646221:-1 | Same_strand|Intronic_coding|ENSRNOT00000057745|ENSRNOG00000008415 ## ENSRNOG00000008415|protein_coding|Nab2| |
novel_multiarm_DicerNOK_mirtron_randfoldOK_bulgeHIGH (1 loci)
sblock3676 [novel_multiarm_DicerNOK_mirtron_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.50/0.62 | 21/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 8 13 | 6 5 | 5arm 3arm | 1 1 | 40 2 | 0.29 0.45 | 4 8 | 2 | 2 | -1 | -4 |
| reads | miRBase family seed | |||
| seed | ---------GUGGGGA---------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------CUCCUCU--------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S2 | |||
| ---------------------------------------------TCTCCTCTGTGTTCTCTATCCC------------- | 22 | 1 | - | |
| --------AGTGGGGAACCAGCAGACGAG--------------------------------------------------- | 21 | - | 1 | |
| rat | tgcatggtAGTGGGGAACCAGCAGACGAGaggctcccactgaaacTCTCCTCTGTGTTCTCTATCCCagctgcctctgca | |||
| ******************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>> | ENSRNOT00000000901 ENSRNOG00000000711 RGD1560125_predicted | |||
| rat | .(((.((((((.((((....(((((.(((((..((.....))..))))).)))))........)))).))))))..))). | 1.000 -33.60 | ||
| rat | chromosome:12:44467892:44467971:1 | Same_strand|Intronic_coding|ENSRNOT00000000901|ENSRNOG00000000711 ## ENSRNOG00000000711|protein_coding|RGD1560125_predicted| |
novel_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap (1 loci)
sblock10096 [novel_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.145 | no | no | 0.41/0.58 | 19/24/0.73 | 1.0 5.1 | 0.5 6.9 | 2 9 | 0 0 | 1 1 | 0 0 | 14 4 | -4 -18 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.33 0.25 | 4 3 | 11 | 1 | 0 | 2 |
| reads | miRBase family seed | ||
| seed | ---------------------------------GACCAUG-------------------------------- | 3 | novel |
| seed | ------------------------------------CAUGGUC----------------------------- | 2 | novel |
| seed | ---------------------------------------GGUCGGC-------------------------- | 2 | novel |
| seed | ---------------GUACUCU-------------------------------------------------- | 1 | novel |
| seed | -----------------ACUCUUG------------------------------------------------ | 1 | novel |
| seed | -------------------------------------------------GAUCAGA---------------- | 1 | miR-383 |
| seed | ---------------------------------------------CAGUGAU-------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------TGACCATGGTCGGCAGTGA--------------------- | 19 | 3 | |
| -----------------------------------CCATGGTCGGCAGTGATCAGA---------------- | 21 | 2 | |
| --------------------------------------TGGTCGGCAGTGATCAGAAGGTCC---------- | 24 | 2 | |
| ------------------------------------------------TGATCAGAAGGTCCAGGATG---- | 20 | 1 | |
| --------------------------------------------GCAGTGATCAGAAGGTCCAG-------- | 20 | 1 | |
| ----------------TACTCTTGCTGATACATGACC----------------------------------- | 21 | 1 | |
| --------------TGTACTCTTGCTGATACATGAC------------------------------------ | 22 | 1 | |
| rat | ggcatcgtgatcaaTGTACTCTTGCTGATACATGACCATGGTCGGCAGTGATCAGAAGGTCCAGGATGgccc | ||
| ************************************************************************ | |||
| rat | ((((((.(((((..((...((((((((((.(((....))))))))))).)).))...))).)).)))).)). | 0.810 -22.00 |
| rat | chromosome:6:122563194:122563265:-1 | intergenic |
novel_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)
sblock5577 [novel_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.033 | no | no | 0.36/0.58 | 19/23/0.71 | 3.0 3.0 | 3.2 0.3 | 4 3 | 0 0 | 1 3 | 0 0 | 0 3 | 6 -6 | 5arm 3arm | 1 2 | nd nd | 0.48 0.37 | 4 4 | 7 | 3 | 0 | -9 |
| reads | miRBase family seed | ||||
| seed | -------AACCAGC------------------------------------------------- | 2 | novel | ||
| seed | -CAAAAUA------------------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------UUCCCAC--------------- | 1 | novel | ||
| seed | -------------------------------------UCUUUUC------------------- | 1 | novel | ||
| seed | ------------------------------------------UCCCACA-------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ------TAACCAGCTCTTTGTGCAGTGTC---------------------------------- | 23 | - | - | 2 | |
| TCAAAATAACCAGCTCTTTGTG----------------------------------------- | 22 | - | - | 1 | |
| -----------------------------------------TTCCCACACTGGACACACC--- | 19 | 1 | - | - | |
| ----------------------------------------TTTCCCACACTGGACACAC---- | 19 | - | 1 | - | |
| ------------------------------------TTCTTTTCCCACACTGGACACAC---- | 23 | - | - | 1 | |
| TCAAAATAACCAGCTCTTTGTGC---------------------------------------- | 23 | - | - | 1 | |
| rat | TCAAAATAACCAGCTCTTTGTGCAGTGTCctttgatTTCTTTTCCCACACTGGACACACCgct | ||||
| *************************************************************** | |||||
| rat | ...........(((....(((.((((((.....((.......))..)))))).)))....))) | 0.930 -11.50 | |||
| rat | chromosome:18:63582843:63582905:-1 | intergenic |
novel_multiarm_DicerNOK_shortStem_loopOverlap (1 loci)
sblock3189 [novel_multiarm_DicerNOK_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.025 | no | no | 0.52/0.52 | 23/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 0 | 14 -1 | 5arm 3arm | 1 1 | nd nd | 0.61 0.27 | 11 3 | 2 | 2 | 0 | -11 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------GAGUACC--------------- | 1 | novel | |
| seed | -GCACAUA-------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------------------------TGAGTACCAGCATCTGCTCAGCA | 23 | - | 1 | |
| TGCACATACCCAGCTGTCTTGGA----------------------------------------- | 23 | 1 | - | |
| rat | TGCACATACCCAGCTGTCTTGGAtgctacagcagctctcacTGAGTACCAGCATCTGCTCAGCA | |||
| **************************************************************** | ||||
| rat | ............((((...((((((((......((((.....))))...))))))))..)))). | 0.980 -18.20 | ||
| rat | chromosome:11:84969100:84969163:1 | intergenic |
novel_multiarm_DicerNOK_shortStem_loopOverlap_bulgeHIGH (1 loci)
sblock10276 [novel_multiarm_DicerNOK_shortStem_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.434 | no | no | 0.29/0.40 | 20/24/1.00 | 0.0 0.0 | 0.0 1.0 | 1 2 | 0 0 | 1 1 | 0 0 | 4 0 | -1 7 | 5arm_loop 3arm | 1 1 | nd nd | 0.38 0.25 | 4 4 | 3 | 2 | 3 | 4 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------ACAGUGU-------------- | 2 | novel | |
| seed | -----CUUUAUA-------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T4S2 | |||
| ----------------------------------------TACAGTGTTAGATGAAGCAG-- | 20 | 1 | - | |
| ----CCTTTATAAACTATTCATGTACCA---------------------------------- | 24 | - | 1 | |
| ----------------------------------------TACAGTGTTAGATGAAGCAGAA | 22 | 1 | - | |
| rat | atctCCTTTATAAACTATTCATGTACCAtttgagggaagaTACAGTGTTAGATGAAGCAGAA | |||
| ************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000060274 ENSRNOG00000023176 C330002I19Rik | |||
| rat | .(((.((((((...(((....((((((......)).....))))....))))))))).))). | 0.760 -8.70 | ||
| rat | chromosome:6:42738728:42738789:1 | Same_strand|Boundary_non-coding|ENSRNOT00000060275|ENSRNOG00000023176 ## Same_strand|Intronic_coding|ENSRNOT00000060274|ENSRNOG00000023176 ## ENSRNOG00000023176|protein_coding|C330002I19Rik|RIKEN cDNA C330002I19 gene Gene [Source:MGI Symbol;Acc:MGI:1924730] |
novel_multiarm_DicerNOK_shortStem_loopOverlap_nonpairedHIGH (1 loci)
sblock39 [novel_multiarm_DicerNOK_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.029 | no | no | 0.30/0.42 | 19/21/0.75 | 0.0 0.0 | 0.3 0.0 | 3 1 | 0 0 | 1 1 | 0 0 | 2 0 | -3 6 | 5arm_loop 3arm | 1 1 | nd nd | 0.40 0.44 | 3 7 | 4 | 2 | 9 | 0 |
| reads | miRBase family seed | |||
| seed | ---AUGUAUA--------------------------------------- | 3 | novel | |
| seed | -------------------------------UUGUGCA----------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --TATGTATATAGTTTCAGGAGC-------------------------- | 21 | - | 2 | |
| ------------------------------CTTGTGCATATATTGTGGG | 19 | 1 | - | |
| --TATGTATATAGTTTCAGGAG--------------------------- | 20 | - | 1 | |
| rat | taTATGTATATAGTTTCAGGAGCtccttgcCTTGTGCATATATTGTGGG | |||
| ************************************************* | ||||
| ----------------------------------------------------------- | ENSRNOT00000044049 ENSRNOG00000040148 | |||
| rat | ((((((((((..((...(((....))).))..))))))))))....... | 1.000 -13.10 | ||
| rat | chromosome:1:13907965:13908013:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000044049|ENSRNOG00000040148 ## ENSRNOG00000040148|protein_coding|| |
novel_multiarm_DicerOK_loopOverlap (1 loci)
sblock2467 [novel_multiarm_DicerOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.155 | no | no | 0.78/0.90 | 18/20/0.75 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 34 46 31 19 | 4 -6 7 19 | 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.20 0.44 0.20 0.30 | 2 4 2 2 | 4 | 3 | 3 | 3 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------------------------GGGUCCC------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------GGCGAGC------------------------------------------------------------------ | 1 | novel | ||
| seed | -----------------------------------CGCGGGC------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ----------------------------------------------------------------------GCCCCUU------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T4S1 | T4S2 | |||
| ---------------------------------------------------------------------------------CGGGTCCCGCCGGGCCTTCA------------------- | 20 | 1 | - | - | |
| ----------------------------------GCGCGGGCAGCGGGGCGAGC------------------------------------------------------------------ | 20 | - | 1 | - | |
| ---------------------------------------------------------------------CGCCCCTTTGCCCGGGTCCC------------------------------- | 20 | - | - | 1 | |
| ----------------------------------------------GGGCGAGCCTGGTACCCC-------------------------------------------------------- | 18 | 1 | - | - | |
| rat | ggcgggagggcggcgcttccggggctggcagaagGCGCGGGCAGCGGGGCGAGCCTGGTACCCCtccttCGCCCCTTTGCCCGGGTCCCGCCGGGCCTTCAgcctgcgcccgagtttgct | ||||
| ************************************************************************************************************************ | |||||
| rat | ((((((.(((((..(((...(((.(((((....(((.(((((((.((((((((...((....))...)))))))).))))))).)))..))))).)))..)))...)))))...)))))) | 0.980 -67.90 | |||
| rat | chromosome:10:85700231:85700350:-1 | intergenic |
novel_multiarm_DicerOK_loopOverlap_mirtron (1 loci)
sblock2550 [novel_multiarm_DicerOK_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.288 | no | no | 0.55/0.63 | 19/24/0.75 | 0.0 0.0 0.0 | 0.5 0.0 0.0 | 2 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 22 35 25 | -1 -18 0 | 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 | 21 4 1 | 0.26 0.29 0.25 | 3 3 3 | 4 | 3 | 1 | 1 |
| reads | miRBase family seed | ||||
| seed | -----------------------UGGGUGA----------------------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------------------GGUGGCU------------------------------------- | 1 | novel | ||
| seed | ------------------------------------CGCUGAU---------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T3S1 | T3S2 | |||
| ----------------------CTGGGTGAGGACTACGCTG------------------------------------------------ | 19 | - | - | 1 | |
| --------------------------------------------CGGTGGCTTCCTTGCATAGA------------------------- | 20 | - | 1 | - | |
| ----------------------CTGGGTGAGGACTACGCTGA----------------------------------------------- | 20 | - | - | 1 | |
| -----------------------------------ACGCTGATTCGGTGGCTTCCTTGC------------------------------ | 24 | 1 | - | - | |
| rat | agcggaggactcctttttggggCTGGGTGAGGACTACGCTGATTCGGTGGCTTCCTTGCATAGAtcgcaatggaagaagaaatcgccgc | ||||
| ***************************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000054976 ENSRNOG00000036701 Actg1 | ||||
| rat | .((((.((.((.(((((((.(((((.(((((((...(((((...)))))...))))))).))).)).)))..)))).))...)).)))) | 0.410 -27.30 | |||
| rat | chromosome:10:109775883:109775971:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000054976|ENSRNOG00000036701 ## Same_strand|Intronic_non-coding|ENSRNOT00000054976|ENSRNOG00000036701 ## ENSRNOG00000036701|protein_coding|Actg1|Actin, cytoplasmic 2 (Gamma-actin). [Source:UniProtKB/Swiss-Prot;Acc:P63259] |
novel_multiarm_DicerOK_loopOverlap_randfoldOK_nonpairedHIGH (1 loci)
sblock10998 [novel_multiarm_DicerOK_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.50/0.57 | 20/23/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 31 27 20 | -1 0 9 | 5arm_loop 3arm 3arm | 1 1 1 | nd nd nd | 0.43 0.32 0.40 | 3 3 5 | 3 | 2 | 1 | 3 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------GAGUACA-------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------GAGACUC----------------------------------------- | 1 | novel | |
| seed | --------------------------------CCCGACU------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| ---------------------------------------------------------TGAGACTCCTGAGTACAGAGCC--------------------------- | 22 | - | 1 | |
| ------------------------------------------------------------------TGAGTACAGAGCCTATGCAG-------------------- | 20 | - | 1 | |
| -------------------------------TCCCGACTCCAGTGTCCCTTCAA---------------------------------------------------- | 23 | 1 | - | |
| rat | cctggaccaggttcttgagtctctggaaagtTCCCGACTCCAGTGTCCCTTCAAttcTGAGACTCCTGAGTACAGAGCCTATGCAGggctggagggcctgtctagg | |||
| ********************************************************************************************************** | ||||
| rat | ((((((.((((..(((.((((.(((....((((...(((.(((.(((...(((....))))))..))))))...)))).....))))))).)))..)))))))))) | 0.820 -41.60 | ||
| rat | chromosome:7:116628215:116628320:-1 | intergenic |
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