other hairpins
novel_multiarm_DicerOK_loopOverlap_randfoldOK_nonpairedHIGH (1 loci)
novel_multiarm_DicerOK_shortStem (1 loci)
sblock4629 [novel_multiarm_DicerOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.337 | no | no | 0.68/0.80 | 20/23/1.00 | 0.0 0.0 | 0.6 0.0 | 7 1 | 0 0 | 4 1 | 0 0 | 4 3 | 9 13 | 5arm 3arm | 1 1 | nd nd | 0.30 0.25 | 3 3 | 8 | 4 | 1 | 2 |
| reads | miRBase family seed | |||||
| seed | -----AGCGCGC---------------------------------------------------------------- | 7 | novel | |||
| seed | ------------------------------------------------------UGAGGCU--------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S1 | T3S2 | |||
| ----GAGCGCGCCTTTCGCGCCCTTTC------------------------------------------------- | 23 | 1 | 1 | 2 | 1 | |
| ----GAGCGCGCCTTTCGCGCCCTTT-------------------------------------------------- | 22 | - | - | - | 1 | |
| -----------------------------------------------------CTGAGGCTGGCAGCGGCCCC--- | 20 | - | - | - | 1 | |
| ----GAGCGCGCCTTTCGCGCCCT---------------------------------------------------- | 20 | 1 | - | - | - | |
| rat | ctggGAGCGCGCCTTTCGCGCCCTTTCtgtgtgccccggcgggcgagcagggaCTGAGGCTGGCAGCGGCCCCaga | |||||
| **************************************************************************** | ||||||
| ................................................................................>>>>>> | ENSRNOT00000058944 ENSRNOG00000038619 | |||||
| rat | (((((.((.(((...(((.(((.(((((((.(((((....))))).)))))))....))))))..)))))))))). | 0.550 -36.00 | ||||
| rat | chromosome:15:46414045:46414120:1 | intergenic |
novel_multiarm_DicerOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH (1 loci)
sblock7164 [novel_multiarm_DicerOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.241 | no | no | 0.52/0.65 | 21/24/1.00 | 1.5 0.0 | 3.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 1 4 | 1 5 | 5arm 3arm | 1 1 | nd nd | 0.38 0.57 | 5 6 | 3 | 1 | 3 | 1 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------GAGCAUG------------------- | 1 | novel |
| seed | --GAGGACU-------------------------------------------------------- | 1 | novel |
| seed | -----GACUUCU----------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -TGAGGACTTCTGGTTGAGGGA------------------------------------------- | 21 | 1 | |
| --------------------------------------TGAGCATGTCGGGGAGGAGGGAG---- | 23 | 1 | |
| ----GGACTTCTGGTTGAGGGAGCAGTG------------------------------------- | 24 | 1 | |
| rat | cTGAGGACTTCTGGTTGAGGGAGCAGTGgggacccatcTGAGCATGTCGGGGAGGAGGGAGgcag | ||
| ***************************************************************** | |||
| rat | (((....(((((..((((.....((((((....))).)))......))))..))))).....))) | 0.960 -16.00 |
| rat | chromosome:20:5547690:5547754:1 | intergenic |
novel_multiarm_DicerOK_shortStem_loopOverlap (1 loci)
sblock7912 [novel_multiarm_DicerOK_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.012 | no | no | 0.30/0.39 | 20/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 2 | -4 -2 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.35 0.10 | 5 1 | 2 | 2 | 2 | 2 |
| reads | miRBase family seed | |||
| seed | -----GCAUUCU--------------------------------------- | 1 | novel | |
| seed | ------------------------------UGCAAUA-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| -----------------------------GTGCAATATAACAATGTAAC-- | 20 | 1 | - | |
| ----TGCATTCTGTTGTCATTGTTCTC------------------------ | 23 | - | 1 | |
| rat | tcctTGCATTCTGTTGTCATTGTTCTCaaGTGCAATATAACAATGTAACga | |||
| *************************************************** | ||||
| rat | ((.((((((..((((((.(((((........))))))))))))))))).)) | 1.000 -11.50 | ||
| rat | chromosome:3:67032300:67032350:1 | intergenic |
novel_multiarm_DicerOK_shortStem_nonpairedHIGH (1 loci)
sblock12591 [novel_multiarm_DicerOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.428 | no | no | 0.29/0.55 | 22/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 3 | 2 4 | 5arm 3arm | 1 1 | nd nd | 0.32 0.42 | 2 4 | 2 | 1 | 2 | 2 |
| reads | miRBase family seed | ||
| seed | -----GGGGACC------------------------------------------------------- | 1 | novel |
| seed | -----------------------------------------GUCUGAA------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----TGGGGACCTCAGTGCAGATACA----------------------------------------- | 22 | 1 | |
| ----------------------------------------TGTCTGAATTCAAAGGAATCAAAA--- | 24 | 1 | |
| rat | ccaaTGGGGACCTCAGTGCAGATACAgatctcattttcctTGTCTGAATTCAAAGGAATCAAAAtgg | ||
| ******************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000047326 ENSRNOG00000037286 LOC367336 | ||
| rat | (((...((..(((.(((.((((((..((........))..)))))).)))...)))..))....))) | 0.500 -11.20 |
| rat | chromosome:9:105251012:105251078:1 | Same_strand|Intronic_coding|ENSRNOT00000047326|ENSRNOG00000037286 ## ENSRNOG00000037286|protein_coding|LOC367336| |
novel_multiarm_Multihit_5varHIGH_loopOverlap_mirtron (1 loci)
block615077 [novel_multiarm_Multihit_5varHIGH_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.609 | no | no | 0.48/0.75 | 20/24/1.00 | 1.5 2.3 | 3.0 1.0 | 2 3 | 0 0 | 2 2 | 0 0 | 26 12 | -16 -7 | 5arm_loop_3arm 3arm_loop | 11 11 | 1 16 | 0.52 0.20 | 8 2 | 5 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------AACGAAC------------------------ | 2 | novel | |||
| seed | ---------------------------CGUCUCC------------------------------------------ | 1 | novel | |||
| seed | --------------------------------------GUUGCAG------------------------------- | 1 | novel | |||
| seed | ------------------------------CUCCUCA--------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S1 | T5S1 | T5S2 | |||
| --------------------------------------------GAACGAACGCGGGGGCCGTG------------ | 20 | 2 | - | - | - | |
| --------------------------GCGTCTCCTCAAGTTGCAGA------------------------------ | 20 | - | 1 | - | - | |
| -----------------------------TCTCCTCAAGTTGCAGAACGAAC------------------------ | 23 | - | - | 1 | - | |
| -------------------------------------AGTTGCAGAACGAACGCGGGGGCC--------------- | 24 | - | - | - | 1 | |
| rat | gccgaggagaagcgcgagggcgcctaGCGTCTCCTCAAGTTGCAGAACGAACGCGGGGGCCGTGcactcttccagg | |||||
| **************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000048298 ENSRNOG00000018804 RGD1306939 | |||||
| rat | .((..(((..((.(((..(((.(((.((((.((.((........))..))))))))).))).))).))..))).)) | 0.910 -27.20 | ||||
| rat | chromosome:17:47394681:47394756:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000025440|ENSRNOG00000018804 ## Same_strand|Boundary_coding|ENSRNOT00000048298|ENSRNOG00000018804 ## ENSRNOG00000018804|protein_coding|RGD1306939|similar to mKIAA0386 protein (RGD1306939), mRNA [Source:RefSeq_dna;Acc:NM_001014009] |
novel_multiarm_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)
block1291024 [novel_multiarm_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.158 | no | no | 0.45/0.59 | 19/25/0.71 | 0.0 2.8 | 0.0 3.0 | 1 6 | 0 0 | 1 4 | 0 0 | 26 13 | -8 -20 | 5arm_loop_3arm 3arm | 22 22 | nd nd | 0.47 0.36 | 5 4 | 7 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------------------------AUCAAGC--------------------------------- | 2 | novel | |||
| seed | ---------------------------UGACUGU-------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------GCGCAAU---------------------------- | 1 | novel | |||
| seed | --------------------------------------------CGCAAUA--------------------------- | 1 | novel | |||
| seed | ---------------------------------------UCAAGCG-------------------------------- | 1 | novel | |||
| seed | ---------------------------------UCCUCAU-------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S2 | T4S1 | T5S1 | T5S2 | |||
| -------------------------------------CATCAAGCGCAATACCACCA--------------------- | 20 | - | 2 | - | - | |
| ------------------------------------------AGCGCAATACCACCATTCCCAC-------------- | 22 | 1 | - | - | - | |
| --------------------------------------ATCAAGCGCAATACCACCATTC------------------ | 22 | - | - | - | 1 | |
| -------------------------------------------GCGCAATACCACCATTCCCACC------------- | 22 | - | - | 1 | - | |
| --------------------------------GTCCTCATCAAGCGCAATACCACCA--------------------- | 25 | - | 1 | - | - | |
| --------------------------ATGACTGTCCTCATCAAGC--------------------------------- | 19 | - | - | - | 1 | |
| rat | ttgggattgaaactgctgatggagtcATGACTGTCCTCATCAAGCGCAATACCACCATTCCCACCaggcagacccaaa | |||||
| ****************************************************************************** | ||||||
| rat | (((((.(((...(((.((..(((((..((..(((.((.....)).)))....))..))))))).))).))).))))). | 0.610 -17.20 | ||||
| rat | chromosome:2:133403563:133403640:1 | intergenic |
novel_multiarm_Multihit_loopOverlap_bulgeHIGH (1 loci)
block1091265 [novel_multiarm_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.077 | no | no | 0.53/0.68 | 19/22/0.75 | 0.0 0.3 | 0.0 0.7 | 1 3 | 0 0 | 1 1 | 0 0 | 44 21 | -19 3 | 5arm_loop_3arm 3arm | 23 26 | nd nd | 0.36 0.26 | 4 4 | 4 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------UCUACCC----------------------------------- | 2 | novel |
| seed | ---------------------------------------------CCCUGGG-------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------------CUACCCU---------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| -----------------------------------------------------TTCTACCCTGCTGACATCACCC--------------------- | 22 | 2 | |
| --------------------------------------------GCCCTGGGCTTCTACCCTGCTG------------------------------ | 22 | 1 | |
| ------------------------------------------------------TCTACCCTGCTGACATCAC----------------------- | 19 | 1 | |
| rat | cccttcaccccagacctgaaggtgatgtcaccctgaggtgctggGCCCTGGGCTTCTACCCTGCTGACATCACCCtgacctggcagttgaatgggg | ||
| ************************************************************************************************ | |||
| rat | (((((((..((((.......((((((((((......((((..(((((...))))).))))....)))))))))).....))))....)))).))). | 0.660 -33.80 |
| rat | chromosome:20:3444076:3444171:1 | intergenic |
novel_multiarm_Multihit_nonpairedHIGH_bulgeHIGH (1 loci)
sblock11748 [novel_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.040 | no | no | 0.53/0.65 | 19/20/0.75 | 0.0 0.0 | 0.0 0.0 | 1 3 | 0 0 | 1 1 | 0 0 | 19 32 | 17 1 | 5arm 3arm | 20 20 | nd nd | 0.42 0.40 | 5 4 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------UGUGUGC-------------------------------------------- | 3 | novel | |
| seed | --------------------UCCGCAA------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T3S2 | |||
| ------------------------------------------------------------------GTGTGTGCCATTCCGGCGGT-------------------------------- | 20 | 3 | - | |
| -------------------ATCCGCAAAGCCACCAAGT-------------------------------------------------------------------------------- | 19 | - | 1 | |
| rat | ggccatcaagggcatgcatATCCGCAAAGCCACCAAGTatcagaaggctgtcactttaaagaagcaGTGTGTGCCATTCCGGCGGTaaaatggtggagtcggtaggtgcgcccaggcc | |||
| ********************************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000023372 ENSRNOG00000017332 Dapk2 | |||
| rat | ((((.....((((..((((..(((.....((((((..((((.((((((...((((..........))))...))).)))....))))...))))))...)))...)))))))).)))) | 0.420 -41.40 | ||
| rat | chromosome:8:70506237:70506354:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000023372|ENSRNOG00000017332 ## ENSRNOG00000017332|protein_coding|Dapk2|death-associated kinase 2 [Source:RefSeq_peptide;Acc:NP_001013127] |
novel_multiarm_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
sblock2999 [novel_multiarm_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.52/0.55 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 30 9 | 8 25 | 5arm 3arm | 455 455 | nd nd | 0.50 0.48 | 4 7 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------------------------GGGGUUG---------------------- | 2 | novel | |
| seed | -------------------------------AGCAGAC------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| ---------------------------------------------------------------------------------------TGGGGTTGGTAACAATGGAGC--------- | 21 | 2 | - | |
| ------------------------------GAGCAGACTGCAGGAGATGA------------------------------------------------------------------- | 20 | - | 1 | |
| rat | ctgcaggagatgagggggttggtaacaatgGAGCAGACTGCAGGAGATGAcggggttggtaacaatggagcagactgcaggaggtggTGGGGTTGGTAACAATGGAGCagactgcag | |||
| ********************************************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058274 ENSRNOG00000001764 RGD1309443_predicted | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000029255 ENSRNOG00000001764 RGD1309443_predicted | |||
| rat | ((((((....((.....((((.((((..((..((...((((((....((.....((((....))))....))..))))))...))..))..)))).)))).......))..)))))) | 0.990 -32.20 | ||
| rat | chromosome:11:81725136:81725252:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000058276|ENSRNOG00000001764 ## Same_strand|Intronic_coding|ENSRNOT00000029255|ENSRNOG00000001764 ## ENSRNOG00000001764|protein_coding|RGD1309443_predicted| ## {Repeats: trf 330 350 0 class=trf,trf 256 276 0 class=trf,trf 108 128 0 class=trf,trf 272 293 0 class=trf,trf 404 424 0 class=trf,trf 182 202 0 class=trf,trf 71 91 0 class=trf,trf 87 108 0 class=trf,trf 145 165 0 class=trf,trf 367 387 0 class=trf,trf 219 239 0 class=trf,trf 34 54 0 class=trf} |
novel_multiarm_loopOverlap_randfoldOK_nonpairedHIGH (1 loci)
sblock4336 [novel_multiarm_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.50/0.60 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 34 0 | -4 31 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.36 0.32 | 4 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------------GGACAGU------------ | 1 | novel |
| seed | -----------------------------------CCUGACU----------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------------TCCTGACTCTGTGTGGCATTTC--------------------------------------------------- | 22 | 1 | |
| ---------------------------------------------------------------------------------------TGGACAGTGATTGGGGCCAC | 20 | 1 | |
| rat | agcctcatgactgtttggaaaaacagactatgcaTCCTGACTCTGTGTGGCATTTCtgtacactgtctactccaaggagcagctttcTGGACAGTGATTGGGGCCAC | ||
| *********************************************************************************************************** | |||
| --------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000007828 ENSRNOG00000005783 NP_001100717.1 | ||
| rat | .(((((((.((((((..(((....((....(((.(((((((...((((.(((....))))))).))).......))))))).)))))..)))))).)).)))))... | 0.480 -36.31 |
| rat | chromosome:15:194546:194652:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000007828|ENSRNOG00000005783 ## ENSRNOG00000005783|protein_coding|NP_001100717.1|discs, large homolog 5 [Source:RefSeq_peptide;Acc:NP_001100717] |
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