miR-Intess: classification

other hairpins

novel_rep_shortStem_mirtron_randfoldOK (1 loci)

novel_shortStem_5varHIGH_mirtron_nonpairedHIGH_bulgeHIGH (1 loci)

block2252272 [novel_shortStem_5varHIGH_mirtron_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.027	no	no	0.40/0.45	20/20/1.00	2.0	2.0	2	0	2	0	3	32	3arm	1	2	0.35	4	2	2	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------UGACUAA-------------------	1	novel
seed	------------------------------------------------------------------------------------------UAACUGU---------------	1	novel
		len	cloning frequencies
			T2S2	T4S2
	-----------------------------------------------------------------------------------------CTAACTGTCCTTTCGTATCT---	20	1	-
	-------------------------------------------------------------------------------------CTGACTAACTGTCCTTTCGT-------	20	-	1
rat	cctgagagctgggcagggaggggctgtggtcacactggtctgtgacctgccaggtaggtcacagcacccgagctgctatgaaggcCTGACTAACTGTCCTTTCGTATCTagg
	****************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>	ENSRNOT00000036357 ENSRNOG00000026212 RGD1305415_predicted
rat	(((.(((((.((((((..((((((((((((......((((((((((((((...))))))))))).)))......)))))...)))))..))..))))))....)).))))))	0.840 -46.00

rat

chromosome:7:117102928:117103039:1

novel_shortStem_loopOverlap_mirtron_nonpairedHIGH (1 loci)

block2633863 [novel_shortStem_loopOverlap_mirtron_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.189	no	no	0.50/0.50	22/22/1.00	0.0	0.0	2	0	1	0	4	-3	3arm_loop	1	1	0.41	3	2	1	na	na

		reads	miRBase family seed
seed	-------------------------UUGUCAC------------------	2	novel
		len	cloning frequencies
			T2S2
	------------------------GTTGTCACACTGTCTTCCCAGT----	22	2
rat	tgagaggctgaagagaggcggcagGTTGTCACACTGTCTTCCCAGTatca
	**************************************************
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++	ENSRNOT00000024261 ENSRNOG00000017952 Sept2
rat	...((.((((((((.((..(((.....)))...)).)))))..))).)).	1.000 -13.20

rat

chromosome:9:92782530:92782579:1

novel_shortStem_loopOverlap_mirtron_randfoldOK_nonpairedHIGH (1 loci)

block1149667 [novel_shortStem_loopOverlap_mirtron_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.48/0.48	23/23/1.00	0.0	0.0	1	0	1	0	1	-4	3arm_loop	1	2	0.39	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------CACUGAU----------------	1	novel
		len	cloning frequencies
			T5S2
	------------------TCACTGATCAGCACTTGCTTTGC-	23	1
rat	gttgagaatgtctgatcaTCACTGATCAGCACTTGCTTTGCa
	******************************************
	++++++++++++++++++++++++++++++++++++++++++++++++>>>>	ENSRNOT00000025804 ENSRNOG00000019023 Tars
	++++++++++++++++++++++++++++++++++++++++++++++++>>>>	ENSRNOT00000051910 ENSRNOG00000019023 Tars
rat	((.(((...(((((((((....))))))).))...))).)).	1.000 -13.40

rat

chromosome:2:60772067:60772108:-1

novel_shortStem_mirtron_randfoldOK_bulgeHIGH (1 loci)

block861469 [novel_shortStem_mirtron_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.67/0.67	21/21/1.00	0.0	0.0	1	0	1	0	2	24	3arm	1	0	0.29	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------------GCAGCCC---------------	1	novel
		len	cloning frequencies
			T5S2
	------------------------------------------------------------------------------------TGCAGCCCCTGTCTGCCTCAG--	21	1
rat	ggccctgcgagcagggagcagagccctgcggctcagtggagcccgcgtgtctgaaggcagtcaggtaggtgggctcctctgaccTGCAGCCCCTGTCTGCCTCAGgt
	***********************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000026839 ENSRNOG00000019831 NP_001100968.1
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>	ENSRNOT00000026966 ENSRNOG00000019883 NP_001099708.1
rat	.(((..(((..(((((.((.......(((((.((((.(((((((((.(((((((......))))))).))))))))).)))).))))))))))))..)))....)))	0.530 -57.51

rat

chromosome:1:83672858:83672964:-1

novel_shortStem_mirtron_randfoldOK_nonpairedHIGH (1 loci)

block1797211 [novel_shortStem_mirtron_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.004	no	no	0.60/0.60	20/20/1.00	0.0	0.0	2	0	1	0	3	32	3arm	1	1	0.40	3	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------------------CUCUUCC---------------	2	novel
		len	cloning frequencies
			T4S1
	----------------------------------------------------------------------------------------------ACTCTTCCCTGCTCCTCCCA---	20	2
rat	cctggggtgctggtgtagccggtgagtgcagggcagtgcaggccagtgcagggcagtgcagggcagtgcggggctgctgctgtcctgcctcaccACTCTTCCCTGCTCCTCCCAggt
	*********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>	ENSRNOT00000011394 ENSRNOG00000008427 Necap2
rat	(((((((.((.((...((..((((((.((((((((((((((.((...(((..((........))..))).)).)))).))))))))))))))))...))..)).))...))))))).	0.970 -63.90

rat

chromosome:5:159930945:159931061:-1

novel_shortStem_mirtron_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)

block780321 [novel_shortStem_mirtron_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	4	28	3arm	1	3	0.36	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------------UUCCUUA------------------	1	novel
		len	cloning frequencies
			T5S1
	-------------------------------------------------------------------------------------------CTTCCTTAATGCAGTCCAGACT----	22	1
rat	tctgaggtctgcaggtcaaggctatggctgtgaagaccactagggtgctgggtgggaaatgagttggagctacagtctggtgggattctagCTTCCTTAATGCAGTCCAGACTtcag
	*********************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>	ENSRNOT00000026730 ENSRNOG00000019651 Slc12a4
rat	.((((((((((...((.((((....(((((.(((..((((((((.((...(((....((....))...))).)).))))))))..)))))))).))))...))....))))))))))	0.490 -42.40

rat

chromosome:19:35792524:35792640:-1

Same_strand|Boundary_coding|ENSRNOT00000026730|ENSRNOG00000019651 ## ENSRNOG00000019651|protein_coding|Slc12a4|Solute carrier family 12 member 4 (Electroneutral potassium-chloride cotransporter 1) (Erythroid K-Cl cotransporter 1) (rKCC1) (Furosemide- sensitive K-Cl cotransporter). [Source:UniProtKB/Swiss-Prot;Acc:Q63632]