other hairpins
novel_lenNOK_nonpairedHIGH_bulgeHIGH (37545 loci)
block88 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.332 | no | no | 0.33/0.33 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 8 | 21 | 5arm | 3 | nd | 0.33 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------GUCUCUU-------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| --------AGTCTCTTTTAAAAACGC---------------------------------------------------------------- | 18 | 1 | |
| rat | ctttctgtAGTCTCTTTTAAAAACGCtccttggaaattttgtccagcataggcttttcgaacagtgggtgttattttgagctattttaga | ||
| ****************************************************************************************** | |||
| ---------------------------------------------------------------------------------------------------- | ENSRNOT00000004346 ENSRNOG00000003198 RGD1305733 | ||
| rat | ((....((((.(((....((.(((((((.(((.....((((...(((....)))...))))))).))))))).))..)))))))...)). | 0.870 -16.90 |
| rat | chromosome:10:175948:176037:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000004346|ENSRNOG00000003198 ## ENSRNOG00000003198|protein_coding|RGD1305733|Uncharacterized protein C16orf45 homolog. [Source:UniProtKB/Swiss-Prot;Acc:Q5FVJ5] |
block103 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.037 | no | no | 0.32/0.32 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 22 | 15 | 5arm | 3 | nd | 0.37 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------UUUGUUC------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| ----------------------CTTTGTTCCTGTTTCAATA-------------------------------------------------------------------------- | 19 | 1 | |
| rat | gagaaaagccccaggagcagacCTTTGTTCCTGTTTCAATAtagctagctgcctgccttctctctgcaggacccagccagatggagcaggaacttgtgcaattggccaacagctc | ||
| ******************************************************************************************************************* | |||
| rat | (((.......((((..(((.......((((((((((((......((.(((((((((.........)))))...)))).)).))))))))))))...)))..)))).......))) | 0.800 -36.34 |
| rat | chromosome:10:200458:200572:-1 | intergenic |
block162 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.362 | no | no | 0.61/0.61 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 9 | 4 | 5arm | 2 | nd | 0.50 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------UUCCCUG-------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| ---------CTTCCCTGCGGCGGAAAT---------------------------------------- | 18 | 1 | |
| rat | tggaaaccaCTTCCCTGCGGCGGAAATttccagaatggatgtcaacgcagaataaaagctgtgccac | ||
| ******************************************************************* | |||
| rat | (((....(((((..(((((...((....(((.....)))..))..))))).....))).))..))). | 0.660 -14.20 |
| rat | chromosome:10:329525:329591:-1 | intergenic |
block288 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.366 | no | no | 0.26/0.26 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 20 | 5 | 5arm | 2 | nd | 0.32 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------GGAGAAA---------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| --------------------TGGAGAAATTTTGTAAAAG----------------------------------------------------------- | 19 | 1 | |
| rat | gggtttgcatgctgaaaattTGGAGAAATTTTGTAAAAGtactagttttagttcagttatcccaggggttctcagacattttctgttgtaaaaatccc | ||
| ************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061841 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061840 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061838 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061835 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061834 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044108 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046607 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061831 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000041358 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061830 ENSRNOG00000032748 LOC688339 | ||
| rat | (((((((((.((.((((((...(((((.((((((((....((((....))))....)))...))))).)))))....)))))).))))))))...))) | 0.750 -19.30 |
| rat | chromosome:10:455055:455152:-1 | Same_strand|Intronic_coding|ENSRNOT00000061841|ENSRNOG00000032748 ## ENSRNOG00000032748|protein_coding|LOC688339|Multidrug resistance-associated protein 1 (ATP-binding cassette sub- family C member 1) (Leukotriene C(4) transporter) (LTC4 transporter). [Source:UniProtKB/Swiss-Prot;Acc:Q8CG09] |
block458 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.013 | no | no | 0.67/0.67 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 8 | 6 | 3arm | 1 | nd | 0.44 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------CUCUGCU------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| --------------------------------------------GCTCTGCTGTGCACCAGG-------- | 18 | 1 | |
| rat | tttcaggcattgctatcatacttggcttataccatcatgggtaaGCTCTGCTGTGCACCAGGgcctggaa | ||
| ********************************************************************** | |||
| -------------------------------------------------------------------------------- | ENSRNOT00000037611 ENSRNOG00000000029 MYH11_RAT | ||
| -------------------------------------------------------------------------------- | ENSRNOT00000044317 ENSRNOG00000000029 MYH11_RAT | ||
| -------------------------------------------------------------------------------- | ENSRNOT00000050218 ENSRNOG00000000029 MYH11_RAT | ||
| -------------------------------------------------------------------------------- | ENSRNOT00000030661 ENSRNOG00000000029 MYH11_RAT | ||
| rat | .(((((((.(((....((((...(((((((.((.....)))))))))....))))...))).))))))). | 0.890 -21.90 |
| rat | chromosome:10:690139:690208:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000050218|ENSRNOG00000000029 ## ENSRNOG00000000029|protein_coding|MYH11_RAT|Myosin-11 (Myosin heavy chain 11) (Myosin heavy chain, smooth muscle isoform) (SMMHC) (Fragments). [Source:UniProtKB/Swiss-Prot;Acc:Q63862] |
block503 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.403 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 5 | 22 | 5arm | 1 | nd | 0.44 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------AGGUCAC---------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| -----TAGGTCACTTACAGCATG------------------------------------------------------------ | 18 | 1 | |
| rat | gagcaTAGGTCACTTACAGCATGttggtgcttctcccccaaaaggccacacctggaaagcacacccagtagggatgaaggctt | ||
| *********************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000000029 ENSRNOG00000000028 Nde1 | ||
| rat | ((((....(((.(((((....((...((((((.(((......(((.....))))))))))))...))))))))))....)))) | 0.730 -20.50 |
| rat | chromosome:10:808417:808499:-1 | Same_strand|Intronic_coding|ENSRNOT00000000029|ENSRNOG00000000028 ## ENSRNOG00000000028|protein_coding|Nde1|Nuclear distribution protein nudE homolog 1 (NudE) (rNudE). [Source:UniProtKB/Swiss-Prot;Acc:Q9ES39] |
block535 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.414 | no | no | 0.28/0.28 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 13 | 27 | 5arm | 1 | nd | 0.39 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------UGCUAUG------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| -------------TTGCTATGTTAAGAAATC--------------------------------------------------------------------------------------- | 18 | 1 | |
| rat | ggctaaccttaagTTGCTATGTTAAGAAATCagcatttaattccagcattcaggaggcagaggcatatggatctctgtgagttagaggctagcctggtctacaaagcaagtttcagtc | ||
| ********************************************************************************************************************** | |||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000003193 ENSRNOG00000002314 Lkap | ||
| rat | ((((......((.(((((.(((..(((....(((.(((((((((((.(((((....((....))...)))))..))).)))))))).))).......)))))).))))).))..)))) | 0.640 -27.40 |
| rat | chromosome:10:867502:867619:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000003193|ENSRNOG00000002314 ## ENSRNOG00000002314|protein_coding|Lkap|Limkain-b1. [Source:UniProtKB/Swiss-Prot;Acc:Q8VIG2] |
block615 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.022 | no | no | 0.54/0.54 | 26/26/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 10 | 19 | 3arm | 1 | nd | 0.46 | 5 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------CUGCCCA---------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| -------------------------------------------------------------TCTGCCCAACTTTCCATCCAGCAACC---------- | 26 | 1 | |
| rat | ctgcaaagcagcttcatctggaaagtcagcaaccctgaatactcaggctcaacttcccaccTCTGCCCAACTTTCCATCCAGCAACCcctgagcagg | ||
| ************************************************************************************************* | |||
| rat | ((((..((..(((.....((((((((..(((..(((((....)))))................)))...))))))))...))).....))..)))). | 0.410 -21.47 |
| rat | chromosome:10:1063200:1063296:-1 | intergenic |
block817 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.012 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0 | 0.0 | 3 | 0 | 1 | 0 | 7 | 22 | 3arm | 1 | nd | 0.32 | 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------------UCUUCCC------------------ | 3 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------------------------------------------------------------------------CTCTTCCCTCTGTCTTCAC------- | 19 | 3 | |
| rat | ggcaggtgtgacagtgacagctaacataaagagagggctgactgctccccactccggttcttttactctgttcccatgtgttctcagccagcttCTCTTCCCTCTGTCTTCACttttgcc | ||
| ************************************************************************************************************************ | |||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000047367 ENSRNOG00000003326 RGD1305001_predicted | ||
| rat | ((((((.((((....(((((........((((((.(((((.(((.....(((...((...............))...)))....))).)))))))))))....))))).)))).)))))) | 0.930 -33.76 |
| rat | chromosome:10:1529083:1529202:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000004429|ENSRNOG00000003326 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000047367|ENSRNOG00000003326 ## ENSRNOG00000003326|protein_coding|RGD1305001_predicted| |
block862 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.153 | no | no | 0.22/0.22 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 26 | 13 | 5arm | 3 | nd | 0.56 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------UUUUGUU--------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| --------------------------ATTTTGTTATTTGGGTTT----------------------------------------------------------------------- | 18 | 1 | |
| rat | tcacaattatttattgaagctattggATTTTGTTATTTGGGTTTttacattgttttatttttgttaatatgttacttctaagctacttcaatagctacatgaaatactacatgaa | ||
| ******************************************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000003284 ENSRNOG00000002407 RGD1562597_predicted | ||
| rat | (((....(((((..((.((((((((((....((..((((((.....((((....(((.......))).))))....))))))..)))))))))))).))..))))).....))). | 0.680 -18.20 |
| rat | chromosome:10:1599434:1599548:-1 | Same_strand|Intronic_coding|ENSRNOT00000003284|ENSRNOG00000002407 ## Same_strand|Boundary_non-coding|ENSRNOT00000040132|ENSRNOG00000002407 ## ENSRNOG00000002407|protein_coding|RGD1562597_predicted| ## {Repeats: dust 1599505 1599521 0 class=dust} |
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