logoSmall RNA from different tissues of two rat strains.

miR-Intess™


Summary
Preprocessing
Mapping
Composition

miR classification
miR expression
Downloads
Table
Thresholds
Families

Clusters
Known and novel clustered miRNAs
clusterIDLocationDistance
cluster 2: 7 miRNAs hsa-mir-372chr1:64272841:64272928:-1
 mmu-mir-294chr1:64272941:64273058:-112
 mmu-mir-293chr1:64273309:64273420:-1250
 mmu-mir-291bchr1:64274052:64274159:-1631
 rno-mir-292chr1:64274340:64274421:-1180
 rno-mir-291achr1:64274628:64274709:-1206
 rno-mir-290chr1:64274926:64275006:-1216
 
cluster 7: 3 miRNAs rno-mir-99bchr1:56486969:56487038:1
 rno-let-7echr1:56487134:56487226:195
 rno-mir-125achr1:56487580:56487664:1353
 
cluster 8: 2 miRNAs block969943_candchr1:64273316:64273414:1
 rno-mir-292-aschr1:64274326:64274443:1911
 
cluster 9: 2 miRNAs rno-mir-194-2chr1:209040065:209040155:1
 rno-mir-192chr1:209040256:209040365:1100
 
cluster 12: 2 miRNAs rno-mir-497chr10:57073846:57073914:1
 rno-mir-195chr10:57074170:57074256:1255
 
cluster 13: 2 miRNAs rno-mir-212chr10:62480434:62480544:1
 rno-mir-132chr10:62480727:62480827:1182
 
cluster 14: 2 miRNAs rno-mir-144chr10:64129346:64129428:1
 rno-mir-451chr10:64129518:64129589:189
 
cluster 15: 2 miRNAs rno-mir-99achr11:16397544:16397624:1
 rno-let-7c-1chr11:16398264:16398357:1639
 
cluster 17: 2 miRNAs rno-mir-301bchr11:85885248:85885325:1
 rno-mir-130bchr11:85885595:85885676:1269
 
cluster 18: 2 miRNAs block182671_novelchr12:11178279:11178393:-1
 block182672_novelchr12:11178280:11178394:-1-114
 
cluster 19: 4 miRNAs rno-mir-25chr12:17607970:17608053:-1
 block187071_candchr12:17608087:17608164:-133
 rno-mir-93chr12:17608173:17608259:-18
 rno-mir-106bchr12:17608382:17608463:-1122
 
cluster 20: 2 miRNAs rno-mir-181a-1chr13:51132517:51132616:1
 rno-mir-181b-1chr13:51132703:51132782:186
 
cluster 21: 2 miRNAs rno-mir-194-1chr13:101312447:101312529:1
 rno-mir-215chr13:101312688:101312784:1158
 
cluster 22: 2 miRNAs rno-mir-29b-2chr13:110967520:110967600:1
 rno-mir-29cchr13:110968048:110968135:1447
 
cluster 26: 6 miRNAs rno-mir-17-1chr15:99853735:99853818:1
 rno-mir-18achr15:99853871:99853966:152
 rno-mir-19achr15:99854018:99854099:151
 rno-mir-20achr15:99854190:99854274:190
 rno-mir-19b-1chr15:99854320:99854406:145
 rno-mir-92a-1chr15:99854442:99854519:135
 
cluster 27: 3 miRNAs rno-mir-24-1chr17:7350971:7351038:-1
 rno-mir-27bchr17:7351449:7351545:-1410
 rno-mir-23bchr17:7351688:7351784:-1142
 
cluster 30: 2 miRNAs rno-let-7a-1-aschr17:22119796:22119903:-1
 rno-let-7f-1-aschr17:22120131:22120227:-1227
 
cluster 33: 2 miRNAs rno-let-7a-1chr17:22119767:22119872:1
 rno-let-7f-1chr17:22120135:22120223:1262
 
cluster 39: 3 miRNAs rno-mir-24-2chr19:25638430:25638537:-1
 rno-mir-27achr19:25638566:25638670:-128
 rno-mir-23achr19:25638744:25638818:-173
 
cluster 41: 2 miRNAs rno-mir-181cchr19:25667392:25667479:1
 rno-mir-181dchr19:25667567:25667649:187
 
cluster 44: 2 miRNAs rno-mir-15bchr2:158992234:158992331:1
 rno-mir-16chr2:158992383:158992477:151
 
cluster 45: 2 miRNAs rno-mir-137chr2:214802296:214802397:1
 block1327956_candchr2:214803178:214803293:1780
 
cluster 47: 2 miRNAs rno-mir-296chr3:165193820:165193897:-1
 rno-mir-298chr3:165194273:165194354:-1375
 
cluster 48: 2 miRNAs rno-mir-181a-2chr3:18650904:18651020:1
 rno-mir-181b-2chr3:18652007:18652094:1986
 
cluster 49: 2 miRNAs hsa-mir-653chr4:28517611:28517723:-1
 rno-mir-489chr4:28518260:28518365:-1536
 
cluster 50: 2 miRNAs rno-mir-96chr4:57074891:57074996:-1
 rno-mir-183chr4:57075094:57075203:-197
 
cluster 51: 2 miRNAs rno-mir-29achr4:58107760:58107847:-1
 rno-mir-29b-1chr4:58108139:58108219:-1291
 
cluster 54: 2 miRNAs rno-mir-141chr4:160840904:160840997:-1
 rno-mir-200cchr4:160841344:160841412:-1346
 
cluster 56: 2 miRNAs rno-mir-29a-aschr4:58107748:58107865:1
 rno-mir-29b-1-aschr4:58108112:58108174:1246
 
cluster 58: 2 miRNAs rno-mir-141-aschr4:160840903:160840998:1
 rno-mir-200c-aschr4:160841317:160841431:1318
 
cluster 61: 3 miRNAs rno-mir-429chr5:172897185:172897269:-1
 rno-mir-200achr5:172898220:172898308:-1950
 rno-mir-200bchr5:172899003:172899092:-1694
 
cluster 64: 4 miRNAs rno-mir-541-aschr6:134423733:134423836:-1
 rno-mir-409-aschr6:134424503:134424582:-1666
 rno-mir-412-aschr6:134424636:134424750:-153
 rno-mir-369-aschr6:134424757:134424873:-16
 
cluster 65: 3 miRNAs rno-mir-337chr6:134176751:134176847:1
 rno-mir-540chr6:134177033:134177116:1185
 hsa-mir-665chr6:134177278:134177394:1161
 
cluster 66: 2 miRNAs rno-mir-431chr6:134182307:134182420:1
 rno-mir-433chr6:134183216:134183308:1795
 
cluster 67: 2 miRNAs rno-mir-434chr6:134186260:134186340:1
 rno-mir-136chr6:134186977:134187058:1636
 
cluster 68: 2 miRNAs rno-mir-411chr6:134389347:134389422:1
 rno-mir-299chr6:134389822:134389884:1399
 
cluster 69: 4 miRNAs rno-mir-380chr6:134390988:134391064:1
 rno-mir-323chr6:134391697:134391782:1632
 rno-mir-758chr6:134391996:134392073:1213
 rno-mir-329chr6:134392666:134392762:1592
 
cluster 70: 2 miRNAs rno-mir-494chr6:134394868:134394950:1
 mmu-mir-1193chr6:134395196:134395315:1245
 
cluster 71: 2 miRNAs mmu-mir-666chr6:134397005:134397121:1
 rno-mir-543chr6:134397158:134397237:136
 
cluster 72: 4 miRNAs rno-mir-376cchr6:134403524:134403607:1
 rno-mir-376bchr6:134404180:134404265:1572
 rno-mir-376achr6:134404690:134404771:1424
 rno-mir-300chr6:134405237:134405315:1465
 
cluster 73: 4 miRNAs rno-mir-381chr6:134407677:134407783:1
 rno-mir-381chr6:134407700:134407760:1-84
 rno-mir-487bchr6:134408209:134408290:1448
 rno-mir-539chr6:134408917:134408992:1626
 
cluster 74: 4 miRNAs rno-mir-382chr6:134415263:134415342:1
 rno-mir-134chr6:134415632:134415704:1289
 mmu-mir-668chr6:134416226:134416292:1521
 rno-mir-485chr6:134416384:134416462:191
 
cluster 75: 2 miRNAs rno-mir-154chr6:134419671:134419754:1
 hsa-mir-496chr6:134420356:134420462:1601
 
cluster 76: 5 miRNAs rno-mir-541chr6:134423740:134423829:1
 rno-mir-409chr6:134424504:134424580:1674
 rno-mir-412chr6:134424656:134424725:175
 rno-mir-369chr6:134424778:134424856:152
 rno-mir-410chr6:134425082:134425157:1225
 
cluster 79: 2 miRNAs rno-let-7c-2chr7:123700790:123700884:1
 rno-let-7bchr7:123701205:123701289:1320
 
cluster 80: 2 miRNAs rno-mir-34cchr8:54422052:54422128:-1
 rno-mir-34bchr8:54422570:54422653:-1441
 
cluster 83: 2 miRNAs rno-mir-191chr8:113614360:113614450:1
 rno-mir-425chr8:113614817:113614899:1366
 
cluster 84: 2 miRNAs rno-mir-421chrX:91563416:91563494:-1
 rno-mir-374chrX:91563572:91563639:-177
 
cluster 86: 6 miRNAs rno-mir-363chrX:139740651:139740737:-1
 rno-mir-92a-2chrX:139740802:139740893:-164
 rno-mir-19b-2chrX:139740932:139741027:-138
 rno-mir-20bchrX:139741071:139741142:-143
 hsa-mir-18bchrX:139741265:139741377:-1122
 rno-mir-17-2chrX:139741444:139741521:-166
 
cluster 87: 2 miRNAs rno-mir-542chrX:139996190:139996268:-1
 block2835051_novelchrX:139996899:139997018:-1630
 
cluster 88: 3 miRNAs rno-mir-351chrX:139999115:139999210:-1
 rno-mir-503chrX:139999870:139999940:-1659
 rno-mir-322chrX:140000161:140000255:-1220
 
cluster 89: 2 miRNAs rno-mir-743achrX:152821786:152821861:-1
 rno-mir-743bchrX:152822276:152822352:-1414
 
cluster 90: 2 miRNAs rno-mir-742chrX:152829269:152829345:-1
 rno-mir-883chrX:152829659:152829735:-1313
 
cluster 91: 2 miRNAs rno-mir-878chrX:152851739:152851815:-1
 rno-mir-881chrX:152852188:152852264:-1372
 
cluster 92: 2 miRNAs mmu-mir-201chrX:154169121:154169240:-1
 hsa-mir-507chrX:154169434:154169531:-1193
 
cluster 93: 2 miRNAs rno-mir-222chrX:14935056:14935158:1
 rno-mir-221chrX:14935617:14935725:1458
 
cluster 94: 2 miRNAs rno-mir-532chrX:27323147:27323225:1
 rno-mir-188chrX:27323547:27323626:1321
 
cluster 95: 2 miRNAs hsa-mir-362chrX:27330423:27330542:1
 rno-mir-501chrX:27331151:27331234:1608
 
cluster 96: 2 miRNAs rno-let-7f-2chrX:41376943:41377025:1
 rno-mir-98chrX:41377546:41377653:1520
 
Cut-off distance for cluster calculation: 1000 nt.
Candidate clustered miRNAs
clusterIDLocationDistance
cluster 1: 2 miRNAs block840166_candchr1:44160872:44160991:-1
 block840167_candchr1:44160932:44161051:-1-60
 
cluster 3: 2 miRNAs block866105_candchr1:92265984:92266098:-1
 block866106_candchr1:92266595:92266662:-1496
 
cluster 4: 2 miRNAs block871208_candchr1:102926972:102927088:-1
 block871207_candchr1:102926979:102927087:-1-110
 
cluster 5: 2 miRNAs block917728_candchr1:215086796:215086913:-1
 block917729_candchr1:215086797:215086914:-1-117
 
cluster 6: 6 miRNAs block937662_candchr1:264746797:264746913:-1
 block937663_candchr1:264746798:264746913:-1-116
 block937664_candchr1:264746863:264746978:-1-51
 block937665_candchr1:264746928:264747043:-1-51
 block937668_candchr1:264747187:264747303:-1143
 block937669_candchr1:264747188:264747303:-1-116
 
cluster 10: 2 miRNAs block1040034_candchr1:228546202:228546317:1
 block1040035_candchr1:228546202:228546317:1-116
 
cluster 11: 2 miRNAs block1049779_candchr1:251525547:251525660:1
 block1049780_candchr1:251525925:251525996:1264
 
cluster 16: 8 miRNAs block173303_candchr11:81841701:81841818:1
 block173304_candchr11:81841701:81841818:1-118
 block173305_candchr11:81841701:81841818:1-118
 block173306_candchr11:81841701:81841818:1-118
 block173307_candchr11:81841733:81841850:1-86
 block173308_candchr11:81841765:81841882:1-86
 block173309_candchr11:81841797:81841914:1-86
 block173310_candchr11:81841829:81841946:1-86
 
cluster 23: 2 miRNAs block334584_candchr14:4633848:4633967:-1
 block334585_candchr14:4634056:4634165:-188
 
cluster 24: 2 miRNAs block426573_candchr15:2034907:2035021:-1
 block426572_candchr15:2034936:2035055:-1-86
 
cluster 25: 3 miRNAs block469268_candchr15:106312734:106312850:-1
 block469269_candchr15:106312784:106312901:-1-67
 block469271_candchr15:106312920:106313039:-118
 
cluster 28: 2 miRNAs block601528_candchr17:17551439:17551548:-1
 block601529_candchr17:17551439:17551548:-1-110
 
cluster 29: 2 miRNAs block603707_candchr17:20743389:20743498:-1
 block603708_candchr17:20743389:20743498:-1-110
 
cluster 31: 2 miRNAs sblock5204_candchr17:79274098:79274217:-1
 sblock5205_candchr17:79274309:79274423:-191
 
cluster 32: 2 miRNAs block645305_candchr17:14974928:14975047:1
 block645304_candchr17:14974930:14975045:1-118
 
cluster 34: 9 miRNAs block685488_candchr18:3999946:4000063:-1
 block685489_candchr18:4000030:4000140:-1-34
 block685490_candchr18:4000188:4000305:-147
 block685491_candchr18:4000272:4000382:-1-34
 block685493_candchr18:4000429:4000548:-146
 block685492_candchr18:4000430:4000547:-1-119
 block685494_candchr18:4000430:4000547:-1-118
 block685495_candchr18:4000630:4000749:-182
 block685496_candchr18:4000670:4000789:-1-80
 
cluster 35: 4 miRNAs block690355_candchr18:17126230:17126344:-1
 block690356_candchr18:17126280:17126394:-1-65
 block690357_candchr18:17126330:17126444:-1-65
 block690358_candchr18:17126380:17126494:-1-65
 
cluster 36: 2 miRNAs block713099_candchr18:63574414:63574524:-1
 block713100_candchr18:63574414:63574524:-1-111
 
cluster 37: 5 miRNAs block714821_candchr18:66794320:66794433:-1
 block714822_candchr18:66794367:66794480:-1-67
 block714823_candchr18:66794414:66794527:-1-67
 block714824_candchr18:66794415:66794527:-1-113
 block714825_candchr18:66794457:66794573:-1-71
 
cluster 38: 2 miRNAs block716183_candchr18:70274837:70274956:-1
 block716184_candchr18:70275013:70275132:-156
 
cluster 40: 2 miRNAs block780941_candchr19:36733856:36733961:-1
 block780942_candchr19:36733935:36734003:-1-27
 
cluster 42: 2 miRNAs block805154_candchr19:26177523:26177639:1
 block805159_candchr19:26178291:26178407:1651
 
cluster 43: 2 miRNAs block1247853_candchr2:28335458:28335575:1
 block1247854_candchr2:28336171:28336288:1595
 
cluster 46: 9 miRNAs block1104084_candchr20:21227114:21227223:1
 block1104085_candchr20:21227114:21227223:1-110
 block1104086_candchr20:21227199:21227310:1-25
 block1104087_candchr20:21227257:21227368:1-54
 block1104088_candchr20:21227314:21227426:1-55
 block1104089_candchr20:21227346:21227455:1-81
 block1104090_candchr20:21227433:21227542:1-23
 block1104091_candchr20:21227634:21227745:191
 block1104092_candchr20:21227634:21227745:1-112
 
cluster 52: 3 miRNAs block1576555_candchr4:120810981:120811100:-1
 block1576558_candchr4:120811200:120811319:-199
 block1576559_candchr4:120811201:120811318:-1-119
 
cluster 53: 2 miRNAs block1584162_candchr4:134932735:134932852:-1
 block1584161_candchr4:134932740:134932859:-1-113
 
cluster 55: 2 miRNAs block1600371_candchr4:164235864:164235949:-1
 block1600401_candchr4:164236907:164237008:-1957
 
cluster 57: 3 miRNAs block1678439_candchr4:132577419:132577538:1
 block1678437_candchr4:132577420:132577537:1-119
 block1678438_candchr4:132577420:132577537:1-118
 
cluster 59: 2 miRNAs sblock9438_candchr5:114557736:114557795:-1
 block1767095_candchr5:114558076:114558182:-1280
 
cluster 60: 2 miRNAs block1795608_candchr5:157734782:157734887:-1
 block1795620_candchr5:157735295:157735403:-1407
 
cluster 62: 3 miRNAs block1884888_candchr5:149060083:149060197:1
 block1884889_candchr5:149060129:149060243:1-69
 block1884890_candchr5:149060281:149060369:137
 
cluster 63: 2 miRNAs block1894595_candchr5:160358393:160358508:1
 block1894597_candchr5:160359238:160359353:1729
 
cluster 77: 2 miRNAs block2249623_candchr7:114449247:114449362:1
 block2249626_candchr7:114450122:114450237:1759
 
cluster 78: 2 miRNAs block2256587_candchr7:121566919:121566985:1
 block2256592_candchr7:121567037:121567109:151
 
cluster 81: 2 miRNAs block2311873_candchr8:57734747:57734854:-1
 block2311883_candchr8:57734973:57735089:-1118
 
cluster 82: 2 miRNAs block2448643_candchr8:110488210:110488329:1
 block2448644_candchr8:110488296:110488415:1-34
 
cluster 85: 2 miRNAs block2796013_candchrX:122484781:122484900:-1
 block2796014_candchrX:122484873:122484987:-1-28
 
Cut-off distance for cluster calculation: 1000 nt.
©2008 InteRNA Genomics B.V.