Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block1040035_cand

block1040035_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block1040035_cand 5arm	0	0	0	0	0	0	0	0	0.500	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block1040035_cand 5arm	0	0	0	0	0	0	0	0	0.000	0

block1040035_cand relative cloning frequencies

block1040035 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.57/0.57	23/23/1.00	0.0	0.0	2	0	1	0	21	9	5arm	2	nd	0.26	3	2	1	na	na

Clusters
Located in cluster 10: block1040034_cand, block1040035_cand

Families
Member of family novel27 (seed CAGUGAG): block1040034_cand, block1040034_cand, block1040035_cand, block1040035_cand

block1040035 hairpin

		reads	miRBase family seed
seed	----------------------CAGUGAG---------------------------------------------------------------------------------------	1	novel
seed	----------------------------------------------------------CAGUGAG---------------------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	---------------------------------------------------------ACAGTGAGACAGGCTGTGTGCAC------------------------------------	23	1
	---------------------ACAGTGAGACAGGCTGTGTGCAC------------------------------------------------------------------------	23	1
rat	gtgtgcgcggtccttgactgtACAGTGAGACAGGCTGTGTGCACggtccttgcctgtACAGTGAGACAGGCTGTGTGCACggtccttggctgtacagtgagacaggctgtgtgcgc
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000015668 ENSRNOG00000015894 LOC499337
rat	(((..(((((((.((.((((((((((.((...(((((((..((((((((((((.......)))))...)))))))..))))))).)).)))))))))).))...)))))))..)))	1.000 -60.20

rat

chromosome:1:228546202:228546317:1

Same_strand|Intronic_coding|ENSRNOT00000015668|ENSRNOG00000015894 ## ENSRNOG00000015894|protein_coding|LOC499337|LOC499337 protein. [Source:UniProtKB/TrEMBL;Acc:Q4KLF9] ## {Repeats: trf 128 151 0 class=trf}

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