miR-Intess: block104027

block104027_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block104027_cand 3arm	102.500	80.500	19	15.500	28	10.500	25	20.500	7	10.500
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block104027_cand 3arm	0.003	0.004	0.001	0.001	0.001	0.001	0.002	0.001	0.000	0.001

block104027 [MANUAL_level2]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.52/0.61	18/22/0.76	0.0	0.0	146	0	10	0	28	10	3arm	1	0	0.10	2	340	10	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------CUGUCCC-----------------------------------------	332	novel
seed	-----------------------------------------------------------------UCUGUCC------------------------------------------	4	novel
seed	-------------------------------------------------------------------UGUCCCU----------------------------------------	3	novel
seed	--------------------------------------------------------------------GUCCCUC---------------------------------------	1	miR-347
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	-----------------------------------------------------------------TCTGTCCCTCTTGGCCCTTAG----------------------------	21	69	56	17	7	21	9	19	15	5	8
	-----------------------------------------------------------------TCTGTCCCTCTTGGCCCT-------------------------------	18	15	9	-	5	2	1	4	1	2	3
	-----------------------------------------------------------------TCTGTCCCTCTTGGCCCTT------------------------------	19	10	9	2	3	4	-	4	3	1	-
	-----------------------------------------------------------------TCTGTCCCTCTTGGCCCTTA-----------------------------	20	12	8	-	2	-	1	-	1	-	1
	----------------------------------------------------------------ATCTGTCCCTCTTGGCCCTTA-----------------------------	21	3	1	-	-	-	-	-	-	-	-
	-----------------------------------------------------------------TCTGTCCCTCTTGGCCCTTAGG---------------------------	22	-	2	-	-	-	-	-	1	-	-
	------------------------------------------------------------------CTGTCCCTCTTGGCCCTTAG----------------------------	20	-	-	-	-	2	-	-	-	-	-
	------------------------------------------------------------------CTGTCCCTCTTGGCCCTT------------------------------	18	1	-	-	-	-	-	-	-	-	-
	-------------------------------------------------------------------TGTCCCTCTTGGCCCTTAG----------------------------	19	-	-	-	1	-	-	-	-	-	-
rat	acgtggtccttagtggaggtttgcttgttataggggctaagaggggccaggcgtgcctgtcatcaTCTGTCCCTCTTGGCCCTTAGgctcggcatgctacctatggcatccgta
	******************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000005684 ENSRNOG00000004032 2310067B10Rik
rat	(((.(((((.....((.(((.((((.(((.(((((((((((((((((((((....)))).........))))))))))))))))))))..)))).))).))...)).)))))).	0.970 -51.90

rat

chromosome:10:105897773:105897886:1

miR-Intess™

block104027_cand

block104027 [MANUAL_level2]