block105522_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block105522_cand 5arm | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block105522_cand 5arm | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
block105522 [novel_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.50/0.50 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 28 | 3 | 5arm | 1 | nd | 0.23 | 3 | 1 | 1 | na | na |
| Member of family novel7 (seed AGCCUGC): sblock12458_novel, block710208_cand, block2089837_cand, block2090425_cand, block2188715_cand, block2189069_cand, block2189814_cand, block2190391_cand, block105522_cand |
| reads | miRBase family seed | ||
| seed | -----------------------------AGCCUGC--------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| ----------------------------TAGCCTGCACACTTAAGACCCT------------------------------------------------------- | 22 | 1 | |
| rat | cttaggtggaatctgtggcttgtggtcaTAGCCTGCACACTTAAGACCCTgctaagcagcatggtcttctgggcaggttagatacagaagtctcttctctttggg | ||
| ********************************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000038088 ENSRNOG00000027498 NP_001100540.1 | ||
| rat | ((((((.((((.....(((((.(((((.((((((((.((...((((((.((((....)))).)))))).)).))))))))))).)).)))))..)))).)))))) | 0.990 -39.00 |
| rat | chromosome:10:108488125:108488229:1 | Same_strand|Intronic_coding|ENSRNOT00000038088|ENSRNOG00000027498 ## ENSRNOG00000027498|protein_coding|NP_001100540.1|similar to RIKEN cDNA D230014K01 (predicted) (RGD1310868_predicted), mRNA [Source:RefSeq_dna;Acc:NM_001107070] |
©2008 InteRNA Genomics B.V.