miR-Intess: block1057932

block1057932_cand

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	30	7	3arm	1	67	0.25	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------GUGAGGG------------------------------------------	1	novel
		len	cloning frequencies
			T2S2
	--------------------------------------------------------------------TGTGAGGGTGTGTTTTTGGG------------------------------	20	1
rat	GGGTGAGCTGCTCTCTTGTGCCCTACTTCCCCGGCAGCCAGTTCACTACATGTCCATGTGTGCATGTGTGTGAGGGTGTGTTTTTGGGGGAGGTGCATGAGGGAGCCAAGTGACAGCT
mouse	---------------------TATACTTCCC-----ATTTTCTCACTGCATGTACATTTGTGCATGTTTGTGAGGGTTTGTGTTTAGG------------------------------
	****** * * * ******* ***** * *
	>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000046798 ENSRNOG00000032813 Mdc1
rat	((.((.((((((((((..(((....((((((((((((((...(((((((((((........))))))).)))).))).)))...))))))))..)))..)))))))..)))..)).))	1.000 -51.20
mouse	....((...( ((.(((((((.((((((((....))))))))..)))))))...)))...)).	0.999 -21.20

rat	chromosome:20:3049372:3049489:-1	Same_strand\|Intronic_coding\|ENSRNOT00000046798\|ENSRNOG00000032813 ## ENSRNOG00000032813\|protein_coding\|Mdc1\|Mediator of DNA damage checkpoint protein 1. [Source:UniProtKB/Swiss-Prot;Acc:Q5U2M8]
mouse	chromosome:17:35988121:35988278:1	Same_strand\|Intronic_coding\|ENSMUST00000082337\|ENSMUSG00000061607\|protein_coding\|mediator of DNA damage checkpoint 1 Gene [Source:MGI Symbol;Acc:MGI:3525201]