Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block1063478_cand

block1063478_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block1063478_cand 3arm	2	0	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block1063478_cand 3arm	0.000	0	0	0	0	0	0	0	0	0

block1063478_cand relative cloning frequencies

block1063478 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.50/0.57	21/22/1.00	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	29 20	6 14	3arm 3arm	1 1	nd nd	0.24 0.41	3 4	2	1	na	na

Families
Member of family miR-346 (seed GUCUGCC): rno-mir-346, block1063478_cand

block1063478 hairpin

		reads	miRBase family seed
seed	---------------------------------------------------------------GUCUGCC------------------------------------------	1	miR-346
seed	-----------------------------------------------------------------------ACAGUGA----------------------------------	1	novel
		len	cloning frequencies
			T1S1
	----------------------------------------------------------------------CACAGTGAACCCAGATATCAGC--------------------	22	1
	--------------------------------------------------------------TGTCTGCCCACAGTGAACCCA-----------------------------	21	1
rat	ctggggcagcctttcttctctgccacctgtcactgtggcctggacagaggacacttgtattcTGTCTGCCCACAGTGAACCCAGATATCAGCcgaatacctgctgtcactag
	****************************************************************************************************************
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>......................................................................................	ENSRNOT00000063534 ENSRNOG00000041781
rat	((((((((((.....(((.(((....((((((((((((...((((((((.((....)).))))))))..)))))))))...)))....)))..))).....)))))).))))	0.940 -42.70

rat

chromosome:20:8145434:8145545:-1

intergenic

©2008 InteRNA Genomics B.V.