Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block113823_cand

block113823_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block113823_cand 3arm	9	4	2	4	8	5	2	11	7	5
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block113823_cand 3arm	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.001	0.000	0.000

block113823_cand relative cloning frequencies

block113823 [novel_lenNOK_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.007	no	no	0.32/0.33	18/19/0.00	0.0	0.1	45	0	10	0	17	9	3arm	1	nd	0.22	2	57	10	na	na

Families
Member of family let-7a/7b/7c/7d/7e/7f/7i/miR-98 (seed GAGGUAG): rno-let-7a, rno-let-7f, rno-let-7e, rno-let-7a, rno-let-7f, rno-let-7d, rno-let-7c, rno-let-7b, rno-mir-98, rno-let-7c, rno-let-7i, block113823_cand, block2634835_cand

block113823 hairpin

		reads	miRBase family seed
seed	-------------------------------------------------------------GAGGUAG----------------------------	57	let-7a/7b/7c/7d/7e/7f/7i/miR-98
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	------------------------------------------------------------TGAGGTAGTAGGTTTATT------------------	18	7	4	2	3	5	5	2	9	6	3
	------------------------------------------------------------TGAGGTAGTAGGTTTATTT-----------------	19	2	-	-	1	3	-	-	2	1	2
rat	agttcctttgtcatagctaaagttcatctactaatcattctaagcctattaaggcaaagaTGAGGTAGTAGGTTTATTTataaaatgtaaatgagc
	************************************************************************************************
rat	.((((.((((.(((.....((((..((((((((.(((.(((..((((....))))..))))))..))))))))..)))).....))))))).))))	0.930 -24.40

rat

chromosome:11:21279062:21279157:-1

intergenic

©2008 InteRNA Genomics B.V.