miR-Intess: block115001

block115001_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block115001_cand 3arm	7.500	0	1	0	2	0	0	1	1	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block115001_cand 3arm	0.000	0	0.000	0	0.000	0	0	0.000	0.000	0

block115001 [novel_cloningOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.017	no	no	0.48/0.67	18/24/0.92	0.0	0.0	8	0	5	0	6	32	3arm	1	nd	0.29	2	13	5	na	na

Families
Member of family novel14 (seed UUUUUGG): block115001_cand, block1369713_cand, block1404988_cand, block1426367_cand, block2490925_cand, block2730600_cand

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------------UUUUUGG-------------------	12	novel
seed	---------------------------------------------------------------------------------------------------GGGGUGG------------	1	novel
		len	cloning frequencies
			T1S1	T2S1	T3S1	T4S2	T5S1
	-------------------------------------------------------------------------------------------TTTTTTGGGGGGTGGGGTTTT------	21	6	1	2	-	1
	--------------------------------------------------------------------------------------------------GGGGGTGGGGTTTTGGTG--	18	-	-	-	1	-
	-------------------------------------------------------------------------------------------TTTTTTGGGGGGTGGGGTTTTGGT---	24	1	-	-	-	-
	-------------------------------------------------------------------------------------------TTTTTTGGGGGGTGGGGTTT-------	20	1	-	-	-	-
rat	gatcaatgggcctctgatttttaagaagctataactaaactctcaggtgagttttttgtaagattaataggagagttgcaaatcatctgggTTTTTTGGGGGGTGGGGTTTTggtgat
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000049121 ENSRNOG00000006997 App
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000042130 ENSRNOG00000006997 App
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000048854 ENSRNOG00000006997 App
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000044081 ENSRNOG00000006997 App
rat	.((((..(((((((...((..(((((((((.......(((((((..((.((((((....)))))).))..)))))))............)))))))))..))..)))))))...))))	0.910 -31.61

rat

chromosome:11:24480138:24480255:-1

Same_strand|Intronic_coding|ENSRNOT00000049121|ENSRNOG00000006997 ## ENSRNOG00000006997|protein_coding|App|Amyloid beta A4 protein precursor (APP) (ABPP) (Alzheimer disease amyloid protein homolog) (Amyloidogenic glycoprotein) (AG) [Contains: Soluble APP-alpha (S-APP-alpha); Soluble APP-beta (S-APP-beta); C99; Beta-amyloid protein 42 (Beta-APP42); Beta-amyloid [Source:UniProtKB/Swiss-Prot;Acc:P08592]

miR-Intess™

block115001_cand

block115001 [novel_cloningOK]