miR-Intess: block1306127

block1306127_cand

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.50/0.50	18/18/0.00	0.0	0.0	11	0	3	0	29	1	5arm	1	nd	0.28	2	12	3	na	na

		reads	miRBase family seed
seed	------------------------------GGAGCAC--------------------------------------------------------------------------	12	novel
		len	cloning frequencies
			T1S1	T2S1	T2S2
	-----------------------------TGGAGCACAGTGGCAAAA----------------------------------------------------------------	18	1	5	6
rat	GTTGTGCCTTGTAGCCTTGCCCTCTGACATGGAGCACAGTGGCAAAAT-TTATTTTGGAAACTATTTTCCTCTGCCCTTAGGTCAGAGGCAGTCAGTGATCAAGGTATGAC
mouse	------------AG-------CGATGGGTTGGAGCACAGTGGCAGAGTGTTATATT----ATCATGTT--TGAGGCCCTGGGTTCAAGCC---CAGTGCT----GCTCTAC
	** * ************* * * ** * * * ** * * * ***** * * **
	----------------------------------------------------- -------------------------------------------------------------------	ENSRNOT00000038543 ENSRNOG00000027833 RGD1562174_predicted
rat	((..(((((((..((.(((.((((((((...(((..(((.((.((((( ..............))))))).)))..)))..)))))))))))...))...)))))))..))	0.790 -39.14
mouse	(( ((.((((((.((((.(((.(((...(((....... ..)))... ....)))))).)))).)))) )).)))) .......	0.854 -27.20

rat	chromosome:2:170924362:170924471:1	Opposite_strand\|Intronic_non-coding\|ENSRNOT00000038543\|ENSRNOG00000027833 ## ENSRNOG00000027833\|protein_coding\|RGD1562174_predicted\|
mouse	chromosome:6:115351918:115351996:-1	intergenic ## {Repeats: trf 0 class=trf,dust 0 class=dust,(TTTG)n -1 class=Simple_repeat}