miR-Intess: block1312042

block1312042_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block1312042_cand 3arm	5	1	0	0	5	9	1	2	1	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block1312042_cand 3arm	0.000	0.000	0	0	0.000	0.001	0.000	0.000	0.000	0

block1312042 [novel_cloningOK_mirtron]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.011	no	no	0.61/0.65	19/23/0.88	0.0	0.4	14	0	7	0	23	7	3arm	1	0	0.24	3	24	7	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------GACCUGU------------------------------------------------------------	23	novel
seed	----------------------------------------------------------------------------------ACCUGUG-----------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T3S1	T3S2	T4S1	T4S2	T5S1
	--------------------------------------------------------------------------------TGACCTGTGGCTCC-TCTCCCAG---------------------------------------------	22	1	-	4	5	-	1	-
	--------------------------------------------------------------------------------TGACCTGTGGCTCC-TCTCCCA----------------------------------------------	21	3	-	-	1	-	-	-
	--------------------------------------------------------------------------------TGACCTGTGGCTCC-TCTCC------------------------------------------------	19	1	-	-	1	1	-	-
	--------------------------------------------------------------------------------TGACCTGTGGCTCC-TCTCCCAG--A------------------------------------------	23	-	-	-	2	-	-	1
	--------------------------------------------------------------------------------TGACCTGTGGCTCC-TCTCCC-----------------------------------------------	20	-	1	-	-	-	1	-
	---------------------------------------------------------------------------------GACCTGTGGCTCC-TCTCCCA----------------------------------------------	20	-	-	1	-	-	-	-
rat	------GAGAGGTGAGCCTAGGGCTGGGC-----TGGATGAAAGGAGAGGAGTTGGCAGGGGCTGGCTATGAGCAT--CCTGACCTGTGGCTCC-TCTCCCAG--ATGTCTCCCTATG-----ACAACCTGCTC--------------
human	-----------GTGAA---AGAGCTGAGAAAATGTGGA-GGGAGGACAGGGATGGACGGGG---------GAGTATGCTCTGACCTGTTTCTCTGTCCCCCAGGCACATCTCCCACTTCATTCACAACGTTCCCTTCC----------
mouse	GCAGGTGAGAGGTGAGCCTAGGGCTGGGC-----TGGACGGAAGGAGAGGAGTTGGCAGGGACTAGCTATGAGCAT--CCTGACCTGTGGCTCC-TCTCCCAG--ATGTCTCCCTATG-----ACAACCTGCTCCTCTGTCAACCTGT
	** **** * **** * ** * * * * * * ***** * *** * ****** * ***** * * *
	>>>++ +++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ ++++++++ >>>>>>>>>>>>> >>>>>>>>>>> >>>>>	ENSRNOT00000030622 ENSRNOG00000022373 Dennd4b
	>>>++ +++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ ++++++++ >>>>>>>>>>>>> >>>>>>>>>>> >>>>>	ENSRNOT00000049810 ENSRNOG00000022373 Dennd4b
rat	(((((((.....(((((..(((( ....((...(((((((((((((((((((((.......))).) )))).))...)))))) ))))))). ..))))))))).. ...)))).)))	0.450 -47.90
human	((((( .(((.((.((..(((((.. (((.(((((((((..((((((( (((....))))..))))))))))))))))))...))))).)).)).))).))))).............	1.000 -45.70
mouse	((((((((.(((.((((..(((...(((. .(((((...((((((((((((((((((....((.....)).) )))).))...)))))) )))))... .)))))))).... ....))))))).))).))).)))))	0.964 -57.90

rat	chromosome:2:182513083:182513195:1	Same_strand\|Boundary_coding\|ENSRNOT00000030622\|ENSRNOG00000022373 ## ENSRNOG00000022373\|protein_coding\|Dennd4b\|DENN/MADD domain containing 4B Gene [Source:MGI Symbol;Acc:MGI:2446201]
human	chromosome:1:152180506:152180619:-1	Same_strand\|Boundary_coding\|ENST00000361217\|ENSG00000198837\|protein_coding\|
mouse	chromosome:3:90074040:90074172:1	Same_strand\|Boundary_coding\|ENSMUST00000090888\|ENSMUSG00000042404\|protein_coding\|DENN/MADD domain containing 4B Gene [Source:MGI Symbol;Acc:MGI:2446201] ## {Repeats: trf 0 class=trf}

miR-Intess™

block1312042_cand

block1312042 [novel_cloningOK_mirtron]