miR-Intess: block131510

block131510_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block131510_cand 5arm	46	17	179.750	104.750	4.250	5	8	21.250	33	15.250
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block131510_cand 5arm	0.002	0.001	0.010	0.006	0.000	0.000	0.001	0.001	0.002	0.001

block131510 [novel_lenNOK_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.010	no	no	0.56/0.61	18/22/0.02	0.0	0.0	512	0	10	0	24	13	5arm	2	nd	0.21	1	877	10	na	na

Families
Member of family miR-31 (seed GGCAAGA): rno-mir-31, block131510_cand, block871208_cand

		reads	miRBase family seed
seed	-------------------------GGCAAGA------------------------------------------------------------------------------------	875	miR-31
seed	------------------------AGGCAAG-------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	------------------------AGGCAAGATGCTGGCAGAG-------------------------------------------------------------------------	19	91	33	326	186	8	10	13	42	63	29
	------------------------AGGCAAGATGCTGGCAGA--------------------------------------------------------------------------	18	2	2	23	19	1	-	2	1	2	3
	------------------------AGGCAAGATGCTGGCAGAGG------------------------------------------------------------------------	20	-	-	5	2	-	-	-	-	-	-
	------------------------AGGCAAGATGCTGGCAGAGGAG----------------------------------------------------------------------	22	-	-	3	3	-	-	1	-	-	-
	------------------------AGGCAAGATGCTGGCAGAGGA-----------------------------------------------------------------------	21	-	-	2	2	-	-	-	-	1	-
	-----------------------GAGGCAAGATGCTGGCAG---------------------------------------------------------------------------	18	-	-	2	-	-	-	-	-	-	-
rat	acatgctttattttacctgggcagAGGCAAGATGCTGGCAGAGgagggcgggtgcagcaaatggtccgtttctctgcctaccatgctcctggctttgctctcagaatgaaatgtgt
	********************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000016438 ENSRNOG00000001706 Kalrn
rat	((((..((((((((....((((((((.((.((.((.(((((((((..((((((.((.....)))))))))))))))))......)))).)).))))))))..))))))))..))))	1.000 -43.30

rat

chromosome:11:68191464:68191579:-1

Opposite_strand|Boundary_non-coding|ENSRNOT00000016340|ENSRNOG00000001706 ## Opposite_strand|Intronic_coding|ENSRNOT00000016438|ENSRNOG00000001706 ## ENSRNOG00000001706|protein_coding|Kalrn|Kalirin (EC 2.7.11.1) (Huntingtin-associated protein-interacting protein) (Protein Duo) (Serine/threonine kinase with Dbl- and pleckstrin homology domain) (PAM COOH-terminal interactor protein 10) (P-CIP10). [Source:UniProtKB/Swiss-Prot;Acc:P97924]

miR-Intess™

block131510_cand

block131510 [novel_lenNOK_cloningHIGH_randfoldOK]