Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block1321852_cand

block1321852_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block1321852_cand 5arm	0	0	0	0	0	0	0	0	0	1
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block1321852_cand 5arm	0	0	0	0	0	0	0	0	0	0.000

block1321852_cand relative cloning frequencies

block1321852 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.007	no	no	0.62/0.62	21/21/1.00	0.0	0.0	1	0	1	0	9	14	5arm	1	nd	0.29	2	1	1	na	na

Families
Member of family novel202 (seed AGGUUGC): block35596_cand, block1321852_cand

block1321852 hairpin

		reads	miRBase family seed
seed	----------AGGUUGC------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S2
	---------GAGGTTGCCTGCCCATGGCTA-----------------------------------------------------------------	21	1
rat	gtgaggcagGAGGTTGCCTGCCCATGGCTAtcttagctagctaggctctagccagcttctgaaggccatagctgctctagaggctccttttcaca
	***********************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000047827 ENSRNOG00000014686 Kcnd3
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000019997 ENSRNOG00000014686 Kcnd3
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000051835 ENSRNOG00000014686 Kcnd3
rat	((((((.(((((.((((..((..((((((.((..((((.(((((...))))).))))...)).)))))).)).)).....)).))))))))))).	0.420 -37.80

rat

chromosome:2:200841638:200841732:1

Same_strand|Intronic_coding|ENSRNOT00000051835|ENSRNOG00000014686 ## Same_strand|Boundary_non-coding|ENSRNOT00000050924|ENSRNOG00000014686 ## ENSRNOG00000014686|protein_coding|Kcnd3|Potassium voltage-gated channel subfamily D member 3 (Voltage-gated potassium channel subunit Kv4.3). [Source:UniProtKB/Swiss-Prot;Acc:Q62897]

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