miR-Intess: block132700

block132700_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block132700_cand 5arm	0	1	0	2	0	2	1	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block132700_cand 5arm	0	0.000	0	0.000	0	0.000	0.000	0	0	0

block132700 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.55/0.58	19/23/0.83	0.0	1.7	6	0	4	0	22	2	5arm	1	nd	0.15	3	6	4	na	na

Families
Member of family novel117 (seed CAUUGCA): block132700_cand, block531563_cand

		reads	miRBase family seed
seed	-----------------------CAUUGCA------------------------------------------------------------------------------------------	6	novel
		len	cloning frequencies
			T1S2	T2S2	T3S2	T4S1
	----------------------TCATTGCAGCCCTCTGCACACAG---------------------------------------------------------------------------	23	1	-	1	1
	----------------------TCATTGCAGCCCTCTGCACA------------------------------------------------------------------------------	20	-	2	-	-
	----------------------TCATTGCAGCCCTCTGCAC-------------------------------------------------------------------------------	19	-	-	1	-
rat	tggtatctctctctcagcccagTCATTGCAGCCCTCTGCACACAGccaagatatgaaacaggccgtgtgcaggctgcagtgttgggaggagtttcaaggtaaggagattaactgcggcca
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000002403 ENSRNOG00000001762 Pcyt1a
rat	.(((((((((..(((..(((((.((((((((((...(((((((.(((.............))).))))))))))))))))))))))..)))...........))))))........))).	0.850 -51.24

rat

chromosome:11:70155093:70155212:-1

Same_strand|Intronic_non-coding|ENSRNOT00000002403|ENSRNOG00000001762 ## ENSRNOG00000001762|protein_coding|Pcyt1a|Choline-phosphate cytidylyltransferase A (EC 2.7.7.15) (Phosphorylcholine transferase A) (CTP:phosphocholine cytidylyltransferase A) (CT A) (CCT A) (CCT-alpha). [Source:UniProtKB/Swiss-Prot;Acc:P19836]

miR-Intess™

block132700_cand

block132700 [novel_randfoldOK]