block1349680_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1349680_cand 3arm | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1349680_cand 3arm | 0 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 |
block1349680 [novel_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.45/0.45 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 37 | 2 | 3arm | 1 | nd | 0.15 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------CAGUUAC------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ------------------------------------------------------------GCAGTTACTGGAAATGAGAG------------------------------------- | 20 | 1 | |
| rat | GGCAGCAGCCCGGCCTCCCACCATTTCCTCTCAGTTTCAGTTCTGAGTGAGCGGAAACA-GCAGTTACTGGAAATGAGAGGTTTGGGGGGGAAAGTAGGGCTTCCAGTGTATGTGCC | ||
| human | ---------------------------CGCTCGGTTTCAGCTGTTGACGAGCGGAAACACACAGTTACTGGAAATGAGAG------------------------------------- | ||
| * *** ******* * * *********** ******************* | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061548 ENSRNOG00000019322 NOTC1_RAT | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000026212 ENSRNOG00000019322 NOTC1_RAT | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000019137 ENSRNOG00000019322 NOTC1_RAT | ||
| rat | (((((((((((.(((((((.(((...(((((((.(((((((.(((..((........)) .)))..))))))).)))))))..))))))))...)).)))))......))...)))) | 0.590 -47.00 | |
| human | ..((((.((((((((((((...........)).))))...)))))).)))).. | 0.212 -10.30 |
| rat | chromosome:3:4666687:4666802:-1 | Same_strand|Intronic_coding|ENSRNOT00000026212|ENSRNOG00000019322 ## Same_strand|Intronic_non-coding|ENSRNOT00000061548|ENSRNOG00000019322 ## ENSRNOG00000019322|protein_coding|NOTC1_RAT|Neurogenic locus notch homolog protein 1 precursor (Notch 1) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain]. [Source:UniProtKB/Swiss-Prot;Acc:Q07008] |
| human | chromosome:9:138547599:138547754:-1 | Same_strand|Intronic_coding|ENST00000371700|ENSG00000148400|protein_coding|Neurogenic locus notch homolog protein 1 Precursor (Notch 1)(hN1)(Translocation-associated notch protein TAN-1) [Contains Notch 1 extracellular truncation;Notch 1 intracellular domain] [Source:UniProtKB/Swiss-Prot;Acc:P46531] |
©2008 InteRNA Genomics B.V.