logoSmall RNA from different tissues of two rat strains.


miR expression

block1360648_cand

block1360648_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block1360648_cand 3arm0010000000
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block1360648_cand 3arm000.0000000000
block1360648_cand relative cloning frequencies

block1360648 [novel_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.001nono0.76/0.7621/21/1.000.0
0.0
1
0
1
0
17
14
3arm
1
nd
0.14
2
11nana
block1360648 hairpin
  readsmiRBase family seed
seed     -------------------------------------------------------------------------GCGCGCG------------------------------     1novel
  lencloning frequencies
   T2S1
      ------------------------------------------------------------------------CGCGCGCGCGCGCGTTGAAAG-----------------     211
rat     cagtgattagtgcataggttttaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgCGCGCGCGCGCGCGTTGAAAGattctaactgttcttgg      
      **************************************************************************************************************      
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ENSRNOT00000059679 ENSRNOG00000031038 LOC362129
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ENSRNOT00000049446 ENSRNOG00000031038 LOC362129
rat     (((.((.((((.......((((((.(((((((((((((((((((..((..((......))..))..))))))))))))))))))).)))))).......)))).))))).     1.000 -43.14

ratchromosome:3:25080296:25080405:-1Same_strand|Intronic_coding|ENSRNOT00000059679|ENSRNOG00000031038 ## ENSRNOG00000031038|protein_coding|LOC362129|Glycosyltransferase-like domain-containing protein 1. [Source:UniProtKB/Swiss-Prot;Acc:Q53E76]


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