block1398060_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1398060_cand 5arm | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1398060_cand 5arm | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
block1398060 [novel_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.33/0.33 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 25 | 4 | 5arm | 1 | nd | 0.19 | 2 | 1 | 1 | na | na |
| Member of family novel45 (seed CUGGCCU): block716183_cand, block716184_cand, block1398060_cand |
| reads | miRBase family seed | ||
| seed | --------------------------CUGGCCU---------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| -------------------------ACTGGCCTTTTGTAGATATTA--------------------------------------------------------- | 21 | 1 | |
| rat | tctaaaagaatctcttgtatatgtcACTGGCCTTTTGTAGATATTAtagtgttgaaaactagtggtgactatataggtcatgaaggcagaggtggggattaga | ||
| ******************************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000015086 ENSRNOG00000037207 Ubr1 | ||
| rat | (((((....(((((.(((.....(((.((((((..(((((.(((((((((.......)))).))))).))))).)))))))))..)))))))).....))))) | 1.000 -28.00 |
| rat | chromosome:3:107697622:107697724:-1 | Same_strand|Intronic_coding|ENSRNOT00000015086|ENSRNOG00000037207 ## ENSRNOG00000037207|protein_coding|Ubr1|ubiquitin protein ligase E3 component n-recognin 1 Gene [Source:MGI (curated);Acc:Ubr1-001] |
©2008 InteRNA Genomics B.V.