miR-Intess: block140795

block140795_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block140795_cand 5arm	41	14	0	0	1	0	0	1	0	1
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block140795_cand 5arm	0.001	0.001	0	0	0.000	0	0	0.000	0	0.000

block140795 [novel_lenNOK_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.67/0.70	18/22/0.38	0.0	1.1	40	0	5	0	23	5	5arm	1	nd	0.29	2	58	5	na	na

		reads	miRBase family seed
seed	------------------------GGGGCAC-------------------------------------------------------------------------	53	novel
seed	----------------------GUGGGGC---------------------------------------------------------------------------	4	novel
seed	-------------------------GGGCACU------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T3S1	T4S2	T5S2
	-----------------------TGGGGCACTCAGGAGGCT---------------------------------------------------------------	18	15	5	-	1	-
	-----------------------TGGGGCACTCAGGAGGCTG--------------------------------------------------------------	19	9	2	1	-	-
	-----------------------TGGGGCACTCAGGAGGCTG--CA----------------------------------------------------------	21	11	1	-	-	-
	-----------------------TGGGGCACTCAGGAGGCTG--CAG---------------------------------------------------------	22	4	2	-	-	-
	---------------------AGTGGGGCACTCAGGAGGC----------------------------------------------------------------	19	2	-	-	-	-
	-----------------------TGGGGCACTCAGGAGGCTG--C-----------------------------------------------------------	20	-	2	-	-	-
	------------------------GGGGCACTCAGGAGGCTG--CA----------------------------------------------------------	20	-	1	-	-	-
	---------------------AGTGGGGCACTCAGGAGGCTG--------------------------------------------------------------	21	-	-	-	-	1
	---------------------AGTGGGGCACTCAGGAGG-----------------------------------------------------------------	18	-	1	-	-	-
rat	GGATCTCTACCCTGGTGGCCGAGTGGGGCACTCAGGAGGCTG--CAGCGACCCCGGTCCTTGCTGCTGCTCCCCAGCACCCCTTTCGGCTCCCTGGAGCCTTCC
mouse	------------------------GGGGCACTCAGGAGGCTGCTCAGTTGCCCAGG--------------CACCAGTTCCTCTGGCTGCTTCCCTGGGGATTCC
	**************** * * * ** ** * * * * ****
rat	(((.(((((....((..((((((.((((..((..(((.((.( (((((((....)))...))))).)))))..))..)))).))))))..)))))))...)))	1.000 -48.20
mouse	((((..((((((((((.((.(((.(((....) )).........))))).)))))).))))..))))	0.205 -25.20

rat	chromosome:11:85512671:85512772:-1	intergenic
mouse	chromosome:2:92245959:92246100:1	Opposite_strand\|Boundary_non-coding\|ENSMUST00000090559\|ENSMUSG00000068742\|protein_coding\|cryptochrome 2 (photolyase-like) Gene [Source:MGI (curated);Acc:Cry2-001]

miR-Intess™

block140795_cand

block140795 [novel_lenNOK_cloningHIGH_randfoldOK]