Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block163900_cand

block163900_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block163900_cand 5arm	73	129	0	0	0	0	0	1	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block163900_cand 5arm	0.002	0.006	0	0	0	0	0	0.000	0	0

block163900_cand relative cloning frequencies

block163900 [novel_lenNOK_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.52/0.56	18/23/0.60	0.0	1.0	189	0	3	0	16	4	5arm	1	nd	0.26	2	203	3	na	na

Families
Member of family novel174 (seed UAAGGCA): block163900_cand, block441195_cand

block163900 hairpin

		reads	miRBase family seed
seed	--------------------------------UAAGGCA---------------------------------------------------------------------------------------	203	novel
		len	cloning frequencies
			T1S1	T1S2	T4S2
	-------------------------------CTAAGGCAGGCAGACTTCAG---------------------------------------------------------------------------	20	28	36	-
	-------------------------------CTAAGGCAGGCAGACTTCA----------------------------------------------------------------------------	19	17	35	-
	-------------------------------CTAAGGCAGGCAGACTTCAGTG-------------------------------------------------------------------------	22	6	28	1
	-------------------------------CTAAGGCAGGCAGACTTC-----------------------------------------------------------------------------	18	18	12	-
	-------------------------------CTAAGGCAGGCAGACTTCAGT--------------------------------------------------------------------------	21	3	15	-
	-------------------------------CTAAGGCAGGCAGACTTCAGTGT------------------------------------------------------------------------	23	1	3	-
rat	---------------CTGGGCAAAGGCTCTCCTAAGGCAGGCAGACTTCAGTGTTGCCCATTTCTCAGTTCTCTGAAGCTTGCTTACCTCCAAAGGGCCTTTGCCATAG-----------------
mouse	CGATGTAAGGAATAACTGGGCAAAGGCTCTCCTAAGGCAGGCAGACTTCAGTGTTGCCCATTTCTCAGTTCTCTGAAGCTTGCTTACCTCCAAAGGGCCTTTGCCATAGCCCTGTACCTTGTCCCG
	**********************************************************************************************
rat	...((((((((((((....(((.(((((..((((((....((..........))...))))))..))))).)))....))))))))))))....	1.000 -39.80
mouse	.....(((((.(((.(((((((((((((((....(((.(((((..((((((....((..........))...))))))..))))).)))....)))))))))))).)))...))).))))).....	0.996 -45.00

rat	chromosome:11:60026016:60026109:1	intergenic
mouse	chromosome:16:42303465:42303590:-1	Same_strand\|Intronic_coding\|ENSMUST00000102817\|ENSMUSG00000047261\|protein_coding\|growth associated protein 43 Gene [Source:MGI (curated);Acc:Gap43-001]

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