logoSmall RNA from different tissues of two rat strains.


miR expression

block166875_cand

block166875_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block166875_cand 3arm0010000000
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block166875_cand 3arm000.0000000000
block166875_cand relative cloning frequencies

block166875 [novel_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.008nono0.52/0.5221/21/1.000.0
0.0
1
0
1
0
14
20
3arm
1
nd
0.19
2
11nana
block166875 hairpin
  readsmiRBase family seed
seed     --------------------------------------------------------------------------UGCUGAG---------------------------     1novel
  lencloning frequencies
   T2S1
      -------------------------------------------------------------------------CTGCTGAGTTCCCTGTCATCT--------------     211
rat     ggggaaggacagacagcaggagacgctcctgcagagggaagcaagtgagtctgtcaccattccatccacatctCTGCTGAGTTCCCTGTCATCTatacccgtacccct      
      ************************************************************************************************************      
 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-------------------------------------------------------------------------------------ENSRNOT00000049180 ENSRNOG00000002229 Adcy5
 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-------------------------------------------------------------------------------------ENSRNOT00000029929 ENSRNOG00000002229 Adcy5
rat     ((((..((..(((..(((((.((.((((..((((((((((....((((.....))))..))))........)))))).)))))))))))..)))....))...)))).     1.000 -39.00

ratchromosome:11:67341107:67341214:1Opposite_strand|Intronic_coding|ENSRNOT00000029929|ENSRNOG00000002229 ## ENSRNOG00000002229|protein_coding|Adcy5|Adenylate cyclase type 5 (EC 4.6.1.1) (Adenylate cyclase type V) (ATP pyrophosphate-lyase 5) (Adenylyl cyclase 5). [Source:UniProtKB/Swiss-Prot;Acc:Q04400]


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