miR-Intess: block173310

block173310_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block173310_cand 5arm	0	0	0	0	0.111	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block173310_cand 5arm	0	0	0	0	0.000	0	0	0	0	0

block173310 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.62/0.62	21/21/1.00	0.0	0.0	3	0	1	0	31	3	5arm	9	nd	0.24	1	3	1	na	na

Clusters
Located in cluster 16: block173303_cand, block173304_cand, block173305_cand, block173306_cand, block173307_cand, block173308_cand, block173309_cand, block173310_cand

Families
Member of family novel1 (seed GCACAGG): block173303_cand, block173303_cand, block173303_cand, block173304_cand, block173304_cand, block173304_cand, block173305_cand, block173305_cand, block173305_cand, block173306_cand, block173306_cand, block173306_cand, block173307_cand, block173307_cand, block173307_cand, block173308_cand, block173308_cand, block173308_cand, block173309_cand, block173309_cand, block173309_cand, block173310_cand, block173310_cand, block173310_cand

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------------------GCACAGG---------------	1	novel
seed	--------------------------------GCACAGG-------------------------------------------------------------------------------	1	novel
seed	----------------------------------------------------------------GCACAGG-----------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	---------------------------------------------------------------AGCACAGGTGGCACAGCTGAG----------------------------------	21	1
	-----------------------------------------------------------------------------------------------AGCACAGGTGGCACAGCTGAG--	21	1
	-------------------------------AGCACAGGTGGCACAGCTGAG------------------------------------------------------------------	21	1
rat	gcacaggtggcacagctgagcagtgagctaaAGCACAGGTGGCACAGCTGAGcagtgagctaaAGCACAGGTGGCACAGCTGAGcagtgagctaaAGCACAGGTGGCACAGCTGAGca
	**********************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000058274 ENSRNOG00000001764 RGD1309443_predicted
	--------------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000029255 ENSRNOG00000001764 RGD1309443_predicted
rat	((.(((.((((.((.(((.((....((((...((.(((.((((.((.(((.((((....))...)).))).)))).)).))).))....))))...)).))).)))).)).))).)).	0.940 -45.70

rat

chromosome:11:81841829:81841946:1

Opposite_strand|Boundary_non-coding|ENSRNOT00000058276|ENSRNOG00000001764 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000058274|ENSRNOG00000001764 ## Opposite_strand|Intronic_coding|ENSRNOT00000029255|ENSRNOG00000001764 ## ENSRNOG00000001764|protein_coding|RGD1309443_predicted| ## {Repeats: trf 23 44 0 class=trf}

miR-Intess™

block173310_cand

block173310 [novel_randfoldOK]