Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block1772000_cand

block1772000_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block1772000_cand 3arm	2	4	0	2	3	0	4	8	5	3
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block1772000_cand 3arm	0.000	0.000	0	0.000	0.000	0	0.000	0.000	0.000	0.000

block1772000_cand relative cloning frequencies

block1772000 [novel_lenNOK_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.010	no	no	0.47/0.50	18/21/0.06	0.0	0.1	26	0	8	0	28	10	3arm	1	nd	0.26	3	31	8	na	na

Families
Member of family miR-24 (seed GGCUCAG): block20227_cand, block790978_cand, block842526_cand, block1772000_cand, block2044801_cand

block1772000 hairpin

		reads	miRBase family seed
seed	--------------------------------------------------------------------------GGCUCAG---------------------------------------	31	miR-24
		len	cloning frequencies
			T1S1	T1S2	T2S2	T3S1	T4S1	T4S2	T5S1	T5S2
	-------------------------------------------------------------------------TGGCTCAGTTCAGGGAAA-----------------------------	18	1	4	2	3	2	6	5	2
	-------------------------------------------------------------------------TGGCTCAGTTCAGGGAAAT----------------------------	19	1	-	-	-	2	1	-	-
	-------------------------------------------------------------------------TGGCTCAGTTCAGGGAAATG---------------------------	20	-	-	-	-	-	-	-	1
	-------------------------------------------------------------------------TGGCTCAGTTCAGGGAAATGT--------------------------	21	-	-	-	-	-	1	-	-
rat	gagttctctggtgcctgggcaaggacagccccctgctgtggacctcactaggccattaccatagtgagtggccTGGCTCAGTTCAGGGAAATgttgctgtccaggtctaagtaattacta
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000032111 ENSRNOG00000022967 NP_001100138.1
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000032126 ENSRNOG00000022967 NP_001100138.1
rat	.((((((.(((.(((((((((..((((...((((((((.((......((((((((((((....)))).)))))))))))))..)))))...))))..)))))))))))))).))))....	0.940 -45.60

rat

chromosome:5:124137381:124137500:-1

Same_strand|Intronic_coding|ENSRNOT00000032126|ENSRNOG00000022967 ## ENSRNOG00000022967|protein_coding|NP_001100138.1|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 [Source:RefSeq_peptide;Acc:NP_001100138]

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