logoSmall RNA from different tissues of two rat strains.


miR expression

block1803685_cand

block1803685_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block1803685_cand 3arm0101000000
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block1803685_cand 3arm00.00000.000000000
block1803685_cand relative cloning frequencies

block1803685 [novel_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.007nono0.50/0.5020/20/1.000.0
0.0
2
0
2
0
16
6
3arm
1
nd
0.15
2
22nana
block1803685 hairpin
  readsmiRBase family seed
seed     -------------------------------------------------------------AACACAC----------------------------     2novel
  lencloning frequencies
   T1S2T2S2
      ------------------------------------------------------------AAACACACTGGGCAAACCCA----------------     2011
rat     agggtaacgaggcagcctgcaggtttgctctgtaggttttgaagacagacaagctctacaAAACACACTGGGCAAACCCAggctataatcacgctg      
      ************************************************************************************************      
 ----------------------------------------------------------------------------------------------------------ENSRNOT00000024443 ENSRNOG00000017940 Rere
 ----------------------------------------------------------------------------------------------------------ENSRNOT00000055512 ENSRNOG00000017940 Rere
rat     ((.((...((...((((((..(((((((((.((..((((((.(((.........))).))))))..)).)))))))))))))))....)))).)).     1.000 -33.50

ratchromosome:5:167649411:167649506:-1Opposite_strand|Intronic_coding|ENSRNOT00000055512|ENSRNOG00000017940 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000024443|ENSRNOG00000017940 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000055511|ENSRNOG00000017940 ## ENSRNOG00000017940|protein_coding|Rere|Arginine-glutamic acid dipeptide repeats protein (Atrophin-1-related protein). [Source:UniProtKB/Swiss-Prot;Acc:Q62901]


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