block1818115_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1818115_cand 5arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1818115_cand 5arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 |
block1818115 [novel_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.35/0.35 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 7 | 20 | 5arm | 1 | nd | 0.05 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------CUGUUUC------------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| -------ACTGTTTCAGCATTAAAGTG------------------------------------------------------------------------------------ | 20 | 1 | |
| rat | ggctaagACTGTTTCAGCATTAAAGTGgttatggactttttcattctaattgtgacagagatgggaagatgtccttccattttatgcatgaaaaataagacacagtaagtc | ||
| *************************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000013563 ENSRNOG00000009683 Sdcbp | ||
| rat | ((((...((((((((((((.((((((((....((((.(((((..(((...........)))...))))).))))..))))))))))).)))).........))))).)))) | 0.980 -30.60 |
| rat | chromosome:5:19837140:19837250:1 | Same_strand|Intronic_coding|ENSRNOT00000013563|ENSRNOG00000009683 ## ENSRNOG00000009683|protein_coding|Sdcbp|Syntenin-1 (Syndecan-binding protein 1). [Source:UniProtKB/Swiss-Prot;Acc:Q9JI92] |
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