block181829_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block181829_cand 5arm | 8 | 1 | 5 | 2 | 41 | 17 | 7 | 6 | 24 | 6 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block181829_cand 5arm | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.001 | 0.001 | 0.000 | 0.002 | 0.000 |
block181829 [novel_cloningHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.048 | no | no | 0.47/0.58 | 18/24/0.94 | 0.0 0.3 | 0.0 0.1 | 1 66 | 0 0 | 1 10 | 0 0 | 9 18 | 27 15 | 5arm 5arm | 1 1 | nd nd | 0.47 0.24 | 7 2 | 117 | 10 | na | na |
| Member of family novel85 (seed GGGCUGU): block1650203_cand, block181829_cand |
| reads | miRBase family seed | |||||||||||
| seed | -------------------GGGCUGU------------------------------------------------------------------------------------------ | 63 | novel | |||||||||
| seed | --------------------GGCUGUG----------------------------------------------------------------------------------------- | 35 | novel | |||||||||
| seed | ------------------UGGGCUG------------------------------------------------------------------------------------------- | 12 | novel | |||||||||
| seed | ----------------------CUGUGAC--------------------------------------------------------------------------------------- | 3 | novel | |||||||||
| seed | -----------------CUGGGCU-------------------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ----------CCAUCUU--------------------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ---------------UUCUGGG---------------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------TGGGCTGTGACAGTCAAACTGA---------------------------------------------------------------------------- | 22 | 1 | 1 | 2 | 1 | 17 | 13 | 2 | 4 | 10 | 2 | |
| -------------------GGGCTGTGACAGTCAAACTGA---------------------------------------------------------------------------- | 21 | 2 | - | 1 | 1 | 9 | 2 | - | 1 | 11 | 1 | |
| ------------------TGGGCTGTGACAGTCAAACTG----------------------------------------------------------------------------- | 21 | - | - | 2 | - | 6 | - | - | - | - | - | |
| -------------------GGGCTGTGACAGTCAAACTG----------------------------------------------------------------------------- | 20 | 3 | - | - | - | 1 | 1 | - | - | 1 | 1 | |
| -----------------CTGGGCTGTGACAGTCAAACTGA---------------------------------------------------------------------------- | 23 | 1 | - | - | - | 4 | - | 1 | - | 1 | - | |
| -----------------CTGGGCTGTGACAGTCAAACTG----------------------------------------------------------------------------- | 22 | - | - | - | - | - | - | 2 | 1 | - | - | |
| ---------------------GCTGTGACAGTCAAACTGA---------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | - | - | - | 2 | |
| ----------------TCTGGGCTGTGACAGTCAAACTGA---------------------------------------------------------------------------- | 24 | - | - | - | - | - | 1 | 1 | - | - | - | |
| ------------------TGGGCTGTGACAGTCAAA-------------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | 1 | - | |
| -----------------CTGGGCTGTGACAGTCAAA-------------------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------GCCATCTTCTGGGCTGTGA---------------------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | - | - | - | - | |
| --------------CTTCTGGGCTGTGACAGTCA---------------------------------------------------------------------------------- | 20 | - | - | - | - | 1 | - | - | - | - | - | |
| -----------------CTGGGCTGTGACAGTCAAACT------------------------------------------------------------------------------ | 21 | - | - | - | - | 1 | - | - | - | - | - | |
| rat | tagccatgtgccatcttcTGGGCTGTGACAGTCAAACTGAtaagatctgattgcttctctttagtcgttagatccagtgattttaaagcctccttagggcagtttcaatgagctga | |||||||||||
| ******************************************************************************************************************** | ||||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000030545 ENSRNOG00000025244 NP_001099377.1 | |||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000039843 ENSRNOG00000025244 NP_001099377.1 | |||||||||||
| rat | (((((((.((((.......(((((.(((.((((..((((....((((((((.(((.......))).))))))))))))))))))).)))))......))))......))).)))). | 0.970 -32.42 | ||||||||||
| rat | chromosome:12:10140198:10140313:-1 | Same_strand|Intronic_coding|ENSRNOT00000039843|ENSRNOG00000025244 ## Same_strand|Intronic_non-coding|ENSRNOT00000030545|ENSRNOG00000025244 ## ENSRNOG00000025244|protein_coding|NP_001099377.1|transformation/transcription domain-associated protein [Source:RefSeq_peptide;Acc:NP_001099377] |
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