block1838680_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1838680_cand 5arm | 2.500 | 1.500 | 0 | 1 | 0 | 1 | 0 | 0.500 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1838680_cand 5arm | 0.000 | 0.000 | 0 | 0.000 | 0 | 0.000 | 0 | 0.000 | 0 | 0 |
block1838680 [novel_lenNOK_cloningOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.67/0.68 | 18/19/0.00 | 0.0 | 0.1 | 12 | 0 | 5 | 0 | 27 | 9 | 5arm | 2 | nd | 0.11 | 1 | 12 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ----------------------------CCCCAGC------------------------------------------------------------------------------------ | 12 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T3S2 | T4S2 | |||
| ---------------------------TCCCCAGCACCTCCACAC-------------------------------------------------------------------------- | 18 | 3 | 3 | 2 | 2 | 1 | |
| ---------------------------TCCCCAGCACCTCCACACC------------------------------------------------------------------------- | 19 | 1 | - | - | - | - | |
| rat | GGTATGAGTCAGGTACCTGGGCCACCTTCCCCAGCACCTCCACACCCA--GCCACACAC-TGTGTTCCCCAAAGGTGGGCAGGGCTGTGGGAGAGGAAGCTCAGGTCCTAGCTGCTGCC | ||||||
| mouse | G---------------------------CCCCAGCACCTCCACAGTGATGATAACACACTTGTGACTTTC--------GTGAAGCTGTG-------------------TGGATTCGGGC | ||||||
| * **************** * ****** **** * * ****** * * * * * * | |||||||
| rat | ((((..((..(((.((((((((..(((((((((((.(((((.((((.. ...((((.. .))))........)))))).))))))).)))).)))..)))))))))))..))..)))) | 0.980 -55.22 | |||||
| mouse | ( (((.....((..((((((.((((...(((....)))....)) ))...)))))) .))....)))) | 0.998 -19.70 | |||||
| rat | chromosome:5:61015546:61015661:1 | intergenic |
| mouse | chromosome:11:3692971:3693126:1 | Opposite_strand|Boundary_non-coding|ENSMUST00000101633|ENSMUSG00000020435|protein_coding|oxysterol binding protein 2 Gene [Source:MGI (curated);Acc:Osbp2-001] ## Opposite_strand|Intronic_coding|ENSMUST00000070552|ENSMUSG00000020435|protein_coding|oxysterol binding protein 2 Gene [Source:MGI (curated);Acc:Osbp2-001] |
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