block184157_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block184157_cand 5arm | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block184157_cand 5arm | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
block184157 [novel_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.48/0.48 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 25 | 13 | 5arm | 1 | nd | 0.10 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------GGAAGUA-------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| -----------------------------AGGAAGTAGTCAAAGGCTGAG------------------------------------------------------------------------------- | 21 | 1 | |
| rat | GAGGGAATGATATTAACAATTAAAC----AGGAAGTAGTCAAAGGCTGAGGTGTTC----AAGAGCTAATTGTCGGGCTCAGTCCTCGGCTCT-CTGCTGCTTCCCGGTTGGTTATTTGTATTTTCCTT | ||
| human | -------------------TAAGAC----AGGAAGTAGTCAAAGT------TGGTC----TAGAAT--ATTGTT---CTGAGCCCCTGCCCCTCCCCCTGCTTCCCA---------------TTTCTTG | ||
| mouse | ----------GATCATAGATAATACTCTGAGGAAGTAGTCAAAGCATGTAGTGTACTTCATGGTAATAGTTGTC-AGCCAAGCACACACAGAT--GGTTGTTCTCCAGGCCACTGTCTAGATT------ | ||
| * * ** *************** ** * * **** * ** * * ** * ** * | |||
| rat | .((((((.(((((.((.((((((.. .((((((((.((.(((((((((..... ..(((((........)))))...))))))).)) .))))))))))...)))))).)).))))))))))) | 1.000 -43.50 | |
| human | (((((. .((((((((.....(( .((.. (((((( ...))) )))..))...))........)))))))).. ..))))) | 0.998 -18.12 | |
| mouse | ((((.((((((....((((..(((.((..((.....(((.((((.((...((((.......... .)))))).)))))))..) )..)))))..))))....)))))))))) | 0.948 -24.20 |
| rat | chromosome:12:13567498:13567617:-1 | intergenic |
| human | chromosome:1:176165178:176165253:1 | Opposite_strand|Boundary_non-coding|ENST00000239472|ENSG00000120341|protein_coding|Protein transport protein Sec16B (Protein SEC16 homolog B)(Regucalcin gene promoter region-related protein p117)(RGPR-p117)(Leucine zipper transcription regulator 2) [Source:UniProtKB/Swiss-Prot;Acc:Q96JE7] ## Opposite_strand|Exonic_non-coding|ENST00000308284|ENSG00000120341|protein_coding|Protein transport protein Sec16B (Protein SEC16 homolog B)(Regucalcin gene promoter region-related protein p117)(RGPR-p117)(Leucine zipper transcription regulator 2) [Source:UniProtKB/Swiss-Prot;Acc:Q96JE7] |
| mouse | chromosome:3:7867289:7867398:-1 | intergenic ## {Repeats: AT_rich -1 class=Low_complexity} |
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