Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block1869139_cand

block1869139_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block1869139_cand 3arm	3	3	1	1	0	1	0	1	1	1
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block1869139_cand 3arm	0.000	0.000	0.000	0.000	0	0.000	0	0.000	0.000	0.000

block1869139_cand relative cloning frequencies

block1869139 [novel_lenNOK_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.53/0.56	18/19/0.00	0.0	0.2	12	0	8	0	22	10	3arm	1	nd	0.21	3	12	8	na	na

Families
Member of family miR-674 (seed CACUGAG): block789354_cand, block1869139_cand

block1869139 hairpin

		reads	miRBase family seed
seed	------------------------------------------------------------------------------CACUGAG---------------------------------	12	miR-674
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S2	T4S2	T5S1	T5S2
	-----------------------------------------------------------------------------GCACTGAGATGGGAGAGA-----------------------	18	3	3	-	1	1	1	-	1
	-----------------------------------------------------------------------------GCACTGAGATGGGAGAGAA----------------------	19	-	-	1	-	-	-	1	-
rat	cttccttccttccttccttccttctcttcctttttatcctttctgtggaggcttcagacataccaaactagacatagGCACTGAGATGGGAGAGAAggcagaaggaataggaacagag
	**********************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000044545 ENSRNOG00000033566
rat	.(((((...(((((((...(((((((((((.(((((.....((((((.((.................))...))))))...))))).)))))))))))..))))))).))))).....	0.770 -39.23

rat

chromosome:5:124694251:124694368:1

Opposite_strand|Intronic_coding|ENSRNOT00000044545|ENSRNOG00000033566 ## ENSRNOG00000033566|protein_coding||

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