block187997_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block187997_cand 3arm | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block187997_cand 3arm | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
block187997 [novel_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.57/0.57 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 21 | 7 | 3arm | 1 | 8 | 0.30 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------CCCUGAU------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| --------------------------------------------------------------------TCCCTGATCCTTCCTCCTGTTGC--------------------- | 23 | 1 | |
| rat | ttccagagggccctgtcagggttgggttccatgtggtaggaaagccagggcttttgtctttcagttcaTCCCTGATCCTTCCTCCTGTTGCctctccagtgccctgtgggac | ||
| **************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>> | ENSRNOT00000001911 ENSRNOG00000001409 Gnb2 | ||
| rat | (((((.(((((.(((...(((..((((..((...((.((((....(((((...(((.....))).....))))).)))).))...))..)))))))))).))))).))))). | 0.850 -41.60 |
| rat | chromosome:12:19598361:19598472:-1 | Same_strand|Intronic_coding|ENSRNOT00000001911|ENSRNOG00000001409 ## ENSRNOG00000001409|protein_coding|Gnb2|Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 (Transducin beta chain 2) (G protein subunit beta-2). [Source:UniProtKB/Swiss-Prot;Acc:P54313] |
©2008 InteRNA Genomics B.V.